Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47022 * 90.00011 * 3 2 1 5 5 H 1.48505 * 109.46947 * 330.00253 * 3 2 1 6 6 H 1.48496 * 109.47076 * 210.00091 * 3 2 1 7 7 C 1.38818 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00046 * 323.81131 * 7 2 1 9 9 N 1.36940 * 119.99766 * 143.80934 * 7 2 1 10 10 C 1.46929 * 120.63423 * 332.18217 * 9 7 2 11 11 C 1.53184 * 108.77303 * 233.58564 * 10 9 7 12 12 C 1.53044 * 109.31388 * 305.36090 * 11 10 9 13 13 C 1.53045 * 109.53662 * 61.36520 * 12 11 10 14 14 H 1.08999 * 109.49443 * 58.59105 * 13 12 11 15 15 N 1.46496 * 109.49646 * 178.68347 * 13 12 11 16 16 C 1.34778 * 120.00294 * 204.99917 * 15 13 12 17 17 O 1.21647 * 119.99534 * 0.02562 * 16 15 13 18 18 C 1.47135 * 120.00372 * 179.97438 * 16 15 13 19 19 C 1.39040 * 121.10270 * 359.72339 * 18 16 15 20 20 N 1.32067 * 121.41208 * 179.76545 * 19 18 16 21 21 C 1.31832 * 123.59821 * 0.51445 * 20 19 18 22 22 O 1.35256 * 119.61122 * 179.74273 * 21 20 19 23 23 C 1.41177 * 120.77475 * 359.75478 * 21 20 19 24 24 C 1.40127 * 122.10355 * 179.97438 * 23 21 20 25 25 C 1.36355 * 119.50885 * 180.02562 * 24 23 21 26 26 C 1.39190 * 121.05120 * 359.97438 * 25 24 23 27 27 C 1.36515 * 120.89525 * 0.02562 * 26 25 24 28 28 C 1.39617 * 119.43577 * 359.97438 * 27 26 25 29 29 C 1.46921 * 120.62615 * 151.89323 * 9 7 2 30 30 H 0.96997 * 119.99974 * 174.93508 * 1 2 3 31 31 H 1.09001 * 109.58329 * 353.36847 * 10 9 7 32 32 H 1.08992 * 109.58698 * 113.79351 * 10 9 7 33 33 H 1.09005 * 109.50224 * 65.31154 * 11 10 9 34 34 H 1.09008 * 109.49813 * 185.41117 * 11 10 9 35 35 H 1.09002 * 109.46086 * 181.38916 * 12 11 10 36 36 H 1.09003 * 109.45640 * 301.36192 * 12 11 10 37 37 H 0.96999 * 119.99947 * 25.00509 * 15 13 12 38 38 H 1.07998 * 119.29092 * 0.02562 * 19 18 16 39 39 H 0.96695 * 113.99771 * 270.01267 * 22 21 20 40 40 H 1.07999 * 120.24556 * 0.02562 * 24 23 21 41 41 H 1.07996 * 119.47914 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.55091 * 180.02562 * 26 25 24 43 43 H 1.07999 * 120.28176 * 179.97438 * 27 26 25 44 44 H 1.08998 * 109.58992 * 246.20149 * 29 9 7 45 45 H 1.08994 * 109.59080 * 6.63482 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 1.4477 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.6265 -2.0475 0.5513 9 7 3.1815 -1.3163 -0.7009 10 6 3.4267 -0.4883 -1.8896 11 6 3.7973 -1.4040 -3.0603 12 6 4.9787 -2.2891 -2.6564 13 6 4.5789 -3.1644 -1.4663 14 1 3.7177 -3.7752 -1.7370 15 7 5.6999 -4.0336 -1.1003 16 6 5.4693 -5.1986 -0.4629 17 8 4.3301 -5.5284 -0.1920 18 6 6.5951 -6.0718 -0.0958 19 6 7.9055 -5.7206 -0.4002 20 7 8.9209 -6.4976 -0.0696 21 6 8.7841 -7.6510 0.5540 22 8 9.8809 -8.3853 0.8494 23 6 7.5062 -8.1289 0.9168 24 6 7.3285 -9.3506 1.5796 25 6 6.0696 -9.7615 1.9047 26 6 4.9575 -8.9863 1.5892 27 6 5.0962 -7.7913 0.9440 28 6 6.3721 -7.3427 0.5974 29 6 4.2194 -2.2645 -0.2741 30 1 -0.4850 -0.8367 -0.0742 31 1 2.5255 0.0732 -2.1360 32 1 4.2468 0.2017 -1.6914 33 1 2.9434 -2.0314 -3.3160 34 1 4.0751 -0.7977 -3.9226 35 1 5.2603 -2.9244 -3.4961 36 1 5.8243 -1.6606 -2.3768 37 1 6.6082 -3.7707 -1.3165 38 1 8.0974 -4.7904 -0.9144 39 1 10.1331 -9.0114 0.1571 40 1 8.1823 -9.9623 1.8310 41 1 5.9332 -10.7034 2.4151 42 1 3.9714 -9.3349 1.8585 43 1 4.2264 -7.1979 0.7036 44 1 5.1029 -1.7165 0.0530 45 1 3.8415 -2.8755 0.5456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008765650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = 12.131574 kcal Electronic energy + Delta-G solvation = -29194.266093 eV Core-core repulsion = 25177.879813 eV Total energy + Delta-G solvation = -4016.386280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34915 -39.67600 -38.29847 -37.59813 -36.98959 -34.54824 -32.71304 -32.29431 -31.49937 -30.78253 -30.27897 -28.58696 -25.09343 -24.98366 -23.94542 -23.27889 -22.21822 -21.70428 -20.77780 -19.72567 -19.29683 -18.08169 -17.82899 -17.42254 -17.24675 -16.13964 -15.75933 -15.31678 -15.15411 -15.07992 -14.54753 -14.50733 -14.15107 -13.76093 -13.68595 -13.60500 -13.34249 -13.27032 -12.79627 -12.42009 -12.38017 -12.28919 -12.24559 -12.03960 -11.70711 -11.59962 -11.05450 -10.65651 -10.61908 -10.24157 -10.18444 -10.04989 -9.97036 -9.60251 -9.49336 -9.45389 -9.24856 -9.03063 -8.34691 -8.21583 -6.98761 -6.34529 -3.23039 -0.31713 0.53554 1.36515 2.41207 3.04897 3.08240 3.09846 3.51621 3.58685 3.72203 3.73290 4.08625 4.24309 4.35666 4.52778 4.67089 4.71380 4.74968 4.94086 5.01352 5.08477 5.13340 5.27973 5.30813 5.35475 5.44677 5.51199 5.60321 5.78401 5.83773 5.93320 5.96575 6.03410 6.16071 6.19668 6.27560 6.33876 6.44137 6.46230 6.60233 6.62881 6.77747 6.80252 6.97350 6.98461 7.45694 7.53068 8.10074 8.24099 8.47897 9.06171 9.65959 10.25120 11.06013 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.002671 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.592677 B =10479.496523 C =11302.658257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.004 3.996 3 Si 1.015 2.985 4 H -0.298 1.298 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.361 4.361 8 H 0.065 0.935 9 N -0.594 5.594 10 C 0.139 3.861 11 C -0.135 4.135 12 C -0.116 4.116 13 C 0.126 3.874 14 H 0.091 0.909 15 N -0.714 5.714 16 C 0.565 3.435 17 O -0.525 6.525 18 C -0.177 4.177 19 C 0.143 3.857 20 N -0.517 5.517 21 C 0.380 3.620 22 O -0.475 6.475 23 C -0.129 4.129 24 C -0.085 4.085 25 C -0.119 4.119 26 C -0.093 4.093 27 C -0.109 4.109 28 C 0.023 3.977 29 C 0.140 3.860 30 H 0.268 0.732 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.394 0.606 38 H 0.163 0.837 39 H 0.406 0.594 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.170 0.830 44 H 0.020 0.980 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.695 -18.747 -2.818 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.200 4.200 3 Si 0.844 3.156 4 H -0.226 1.226 5 H -0.220 1.220 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.175 4.175 12 C -0.154 4.154 13 C 0.021 3.979 14 H 0.109 0.891 15 N -0.365 5.365 16 C 0.351 3.649 17 O -0.403 6.403 18 C -0.182 4.182 19 C -0.002 4.002 20 N -0.235 5.235 21 C 0.188 3.812 22 O -0.283 6.283 23 C -0.133 4.133 24 C -0.105 4.105 25 C -0.137 4.137 26 C -0.113 4.113 27 C -0.127 4.127 28 C 0.017 3.983 29 C 0.013 3.987 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.229 0.771 38 H 0.180 0.820 39 H 0.266 0.734 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.187 0.813 44 H 0.038 0.962 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.418 -16.681 -2.278 24.953 hybrid contribution 0.092 -2.014 -0.208 2.027 sum 18.510 -18.695 -2.486 26.426 Atomic orbital electron populations 1.70876 1.06997 1.29845 1.45747 1.26121 0.95911 1.00710 0.97232 0.84660 0.76581 0.77388 0.76935 1.22621 1.22044 1.19541 1.20064 0.97967 0.98179 1.32672 0.91737 1.44292 1.16562 1.43853 1.27113 1.21440 0.99214 0.92325 0.85708 1.22073 0.97330 0.98872 0.99208 1.21684 0.99167 0.97938 0.96618 1.21877 0.88205 0.91166 0.96674 0.89099 1.46055 1.10883 1.20367 1.59195 1.17650 0.87946 0.81058 0.78212 1.90690 1.22801 1.73085 1.53758 1.21975 0.95001 0.96594 1.04679 1.22442 0.86087 0.97277 0.94388 1.66555 1.36473 1.06055 1.14467 1.19387 0.84508 0.88009 0.89324 1.84622 1.44176 1.54243 1.45288 1.18895 0.92535 0.97487 1.04356 1.20879 0.98141 0.94476 0.97021 1.21032 0.92452 1.00290 0.99886 1.21260 0.99362 0.94216 0.96427 1.21897 0.97915 0.96471 0.96380 1.18807 0.93423 0.91503 0.94525 1.21330 0.91880 0.91404 0.94095 0.92248 0.91400 0.95121 0.91763 0.92243 0.92547 0.92013 0.77134 0.82011 0.73377 0.84544 0.85311 0.85053 0.81258 0.96230 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.70 55.49 0.76 -26.90 16 2 C 0.00 0.13 4.82 -17.43 -0.08 0.04 16 3 Si 1.02 25.17 27.00 -169.99 -4.59 20.58 16 4 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.05 4.72 56.52 0.27 -5.79 16 7 C -0.36 -10.26 9.70 -15.06 -0.15 -10.41 16 8 H 0.06 2.00 8.06 -52.49 -0.42 1.58 16 9 N -0.59 -14.26 2.71 -172.06 -0.47 -14.73 16 10 C 0.14 2.94 4.36 -3.71 -0.02 2.92 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C -0.12 -1.67 5.35 -26.69 -0.14 -1.81 16 13 C 0.13 2.10 2.62 -67.58 -0.18 1.92 16 14 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.71 -9.58 5.03 -54.63 -0.28 -9.85 16 16 C 0.56 8.47 7.73 -12.65 -0.10 8.37 16 17 O -0.53 -9.72 13.38 5.24 0.07 -9.65 16 18 C -0.18 -2.27 6.06 -102.68 -0.62 -2.89 16 19 C 0.14 1.56 10.70 -17.15 -0.18 1.38 16 20 N -0.52 -5.96 10.25 -12.66 -0.13 -6.08 16 21 C 0.38 3.98 7.79 -16.44 -0.13 3.85 16 22 O -0.48 -3.68 12.80 -17.46 -0.22 -3.90 16 23 C -0.13 -1.40 5.75 -106.78 -0.61 -2.01 16 24 C -0.09 -0.73 9.58 -39.55 -0.38 -1.10 16 25 C -0.12 -0.97 9.95 -39.91 -0.40 -1.36 16 26 C -0.09 -0.92 9.96 -39.85 -0.40 -1.31 16 27 C -0.11 -1.39 9.32 -39.69 -0.37 -1.76 16 28 C 0.02 0.29 5.90 -104.77 -0.62 -0.33 16 29 C 0.14 2.89 6.12 -3.49 -0.02 2.87 16 30 H 0.27 8.21 8.73 -40.82 -0.36 7.86 16 31 H 0.07 1.56 5.81 -51.93 -0.30 1.26 16 32 H 0.03 0.63 6.60 -51.93 -0.34 0.29 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.39 3.91 6.69 -40.82 -0.27 3.64 16 38 H 0.16 1.28 6.42 -52.49 -0.34 0.95 16 39 H 0.41 0.97 9.06 45.56 0.41 1.39 16 40 H 0.14 0.81 7.66 -52.49 -0.40 0.40 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.17 2.50 5.23 -52.49 -0.27 2.23 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 1.43 7.93 -51.93 -0.41 1.02 16 LS Contribution 362.21 15.07 5.46 5.46 Total: -1.00 -35.35 362.21 -8.94 -44.29 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.99 Total: 4.86 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -4.56 Total: -4.07 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.11 Total: -57.57 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.15 Total: -13.55 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -4.59 Total: 20.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.35 -8.94 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008765650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.425 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds