Wall clock time and date at job start Sat Apr 11 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47022 * 90.00011 * 3 2 1 5 5 H 1.48505 * 109.46947 * 330.00253 * 3 2 1 6 6 H 1.48496 * 109.47076 * 210.00091 * 3 2 1 7 7 C 1.38818 * 119.99874 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00046 * 323.81131 * 7 2 1 9 9 N 1.36940 * 119.99766 * 143.80934 * 7 2 1 10 10 C 1.46929 * 120.63423 * 332.18217 * 9 7 2 11 11 C 1.53184 * 108.77303 * 233.58564 * 10 9 7 12 12 C 1.53044 * 109.31388 * 305.36090 * 11 10 9 13 13 C 1.53045 * 109.53662 * 61.36520 * 12 11 10 14 14 H 1.08999 * 109.49443 * 58.59105 * 13 12 11 15 15 N 1.46496 * 109.49646 * 178.68347 * 13 12 11 16 16 C 1.34778 * 120.00294 * 204.99917 * 15 13 12 17 17 O 1.21647 * 119.99534 * 0.02562 * 16 15 13 18 18 C 1.47135 * 120.00372 * 179.97438 * 16 15 13 19 19 C 1.39040 * 121.10270 * 359.72339 * 18 16 15 20 20 N 1.32067 * 121.41208 * 179.76545 * 19 18 16 21 21 C 1.31832 * 123.59821 * 0.51445 * 20 19 18 22 22 O 1.35256 * 119.61122 * 179.74273 * 21 20 19 23 23 C 1.41177 * 120.77475 * 359.75478 * 21 20 19 24 24 C 1.40127 * 122.10355 * 179.97438 * 23 21 20 25 25 C 1.36355 * 119.50885 * 180.02562 * 24 23 21 26 26 C 1.39190 * 121.05120 * 359.97438 * 25 24 23 27 27 C 1.36515 * 120.89525 * 0.02562 * 26 25 24 28 28 C 1.39617 * 119.43577 * 359.97438 * 27 26 25 29 29 C 1.46921 * 120.62615 * 151.89323 * 9 7 2 30 30 H 0.96997 * 119.99974 * 174.93508 * 1 2 3 31 31 H 1.09001 * 109.58329 * 353.36847 * 10 9 7 32 32 H 1.08992 * 109.58698 * 113.79351 * 10 9 7 33 33 H 1.09005 * 109.50224 * 65.31154 * 11 10 9 34 34 H 1.09008 * 109.49813 * 185.41117 * 11 10 9 35 35 H 1.09002 * 109.46086 * 181.38916 * 12 11 10 36 36 H 1.09003 * 109.45640 * 301.36192 * 12 11 10 37 37 H 0.96999 * 119.99947 * 25.00509 * 15 13 12 38 38 H 1.07998 * 119.29092 * 0.02562 * 19 18 16 39 39 H 0.96695 * 113.99771 * 270.01267 * 22 21 20 40 40 H 1.07999 * 120.24556 * 0.02562 * 24 23 21 41 41 H 1.07996 * 119.47914 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.55091 * 180.02562 * 26 25 24 43 43 H 1.07999 * 120.28176 * 179.97438 * 27 26 25 44 44 H 1.08998 * 109.58992 * 246.20149 * 29 9 7 45 45 H 1.08994 * 109.59080 * 6.63482 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 1.4477 2.6527 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.6265 -2.0475 0.5513 9 7 3.1815 -1.3163 -0.7009 10 6 3.4267 -0.4883 -1.8896 11 6 3.7973 -1.4040 -3.0603 12 6 4.9787 -2.2891 -2.6564 13 6 4.5789 -3.1644 -1.4663 14 1 3.7177 -3.7752 -1.7370 15 7 5.6999 -4.0336 -1.1003 16 6 5.4693 -5.1986 -0.4629 17 8 4.3301 -5.5284 -0.1920 18 6 6.5951 -6.0718 -0.0958 19 6 7.9055 -5.7206 -0.4002 20 7 8.9209 -6.4976 -0.0696 21 6 8.7841 -7.6510 0.5540 22 8 9.8809 -8.3853 0.8494 23 6 7.5062 -8.1289 0.9168 24 6 7.3285 -9.3506 1.5796 25 6 6.0696 -9.7615 1.9047 26 6 4.9575 -8.9863 1.5892 27 6 5.0962 -7.7913 0.9440 28 6 6.3721 -7.3427 0.5974 29 6 4.2194 -2.2645 -0.2741 30 1 -0.4850 -0.8367 -0.0742 31 1 2.5255 0.0732 -2.1360 32 1 4.2468 0.2017 -1.6914 33 1 2.9434 -2.0314 -3.3160 34 1 4.0751 -0.7977 -3.9226 35 1 5.2603 -2.9244 -3.4961 36 1 5.8243 -1.6606 -2.3768 37 1 6.6082 -3.7707 -1.3165 38 1 8.0974 -4.7904 -0.9144 39 1 10.1331 -9.0114 0.1571 40 1 8.1823 -9.9623 1.8310 41 1 5.9332 -10.7034 2.4151 42 1 3.9714 -9.3349 1.8585 43 1 4.2264 -7.1979 0.7036 44 1 5.1029 -1.7165 0.0530 45 1 3.8415 -2.8755 0.5456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008765650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:09 Heat of formation + Delta-G solvation = -16.500401 kcal Electronic energy + Delta-G solvation = -29195.507669 eV Core-core repulsion = 25177.879813 eV Total energy + Delta-G solvation = -4017.627856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19552 -40.84368 -39.23235 -38.87001 -37.79567 -36.08440 -34.44509 -33.19039 -32.60552 -32.28506 -31.39682 -29.77711 -26.90783 -25.97770 -24.74206 -24.38412 -23.56480 -23.26415 -21.89829 -21.26475 -20.10116 -19.35249 -18.87831 -18.76521 -18.25409 -17.17115 -16.80908 -16.65603 -16.31318 -16.07827 -15.87820 -15.69838 -15.53818 -15.35447 -15.01642 -14.72504 -14.43224 -14.33961 -14.18807 -13.88381 -13.61943 -13.39893 -13.19569 -13.06415 -12.93809 -12.69828 -12.53053 -12.47194 -12.03300 -11.78471 -11.67696 -11.39318 -11.17627 -11.05808 -11.04991 -10.56873 -10.48054 -10.26102 -10.20440 -9.16241 -9.02542 -8.61711 -5.47362 -1.13947 -0.25334 0.54727 1.50818 1.53575 1.57635 1.77260 1.94681 2.11597 2.35890 2.58703 2.89077 2.94358 3.28265 3.41258 3.47587 3.58639 3.76132 3.80139 3.92522 4.03370 4.06931 4.13557 4.23303 4.34535 4.36277 4.42459 4.51098 4.59236 4.70883 4.76392 4.90163 4.93321 5.00029 5.04098 5.09059 5.13282 5.21822 5.24407 5.33106 5.38364 5.47260 5.54828 5.79795 5.81122 6.22838 6.43359 6.48069 6.69484 6.89584 7.14637 7.59051 8.09996 8.73613 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.002671 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.592677 B =10479.496523 C =11302.658257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.048 4.048 3 Si 1.070 2.930 4 H -0.299 1.299 5 H -0.294 1.294 6 H -0.227 1.227 7 C -0.356 4.356 8 H 0.012 0.988 9 N -0.611 5.611 10 C 0.130 3.870 11 C -0.129 4.129 12 C -0.106 4.106 13 C 0.140 3.860 14 H 0.051 0.949 15 N -0.699 5.699 16 C 0.563 3.437 17 O -0.574 6.574 18 C -0.210 4.210 19 C 0.164 3.836 20 N -0.537 5.537 21 C 0.400 3.600 22 O -0.473 6.473 23 C -0.146 4.146 24 C -0.071 4.071 25 C -0.120 4.120 26 C -0.084 4.084 27 C -0.151 4.151 28 C 0.006 3.994 29 C 0.142 3.858 30 H 0.250 0.750 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.416 0.584 38 H 0.192 0.808 39 H 0.432 0.568 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.043 0.957 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.829 -19.388 -3.927 30.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.246 4.246 3 Si 0.894 3.106 4 H -0.227 1.227 5 H -0.221 1.221 6 H -0.150 1.150 7 C -0.485 4.485 8 H 0.030 0.970 9 N -0.336 5.336 10 C 0.006 3.994 11 C -0.169 4.169 12 C -0.143 4.143 13 C 0.034 3.966 14 H 0.070 0.930 15 N -0.351 5.351 16 C 0.352 3.648 17 O -0.455 6.455 18 C -0.215 4.215 19 C 0.019 3.981 20 N -0.257 5.257 21 C 0.208 3.792 22 O -0.286 6.286 23 C -0.150 4.150 24 C -0.090 4.090 25 C -0.138 4.138 26 C -0.103 4.103 27 C -0.168 4.168 28 C 0.001 3.999 29 C 0.015 3.985 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.254 0.746 38 H 0.209 0.791 39 H 0.297 0.703 40 H 0.189 0.811 41 H 0.183 0.817 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.061 0.939 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 23.646 -17.369 -3.430 29.540 hybrid contribution -1.457 -2.086 0.239 2.556 sum 22.189 -19.455 -3.191 29.682 Atomic orbital electron populations 1.71007 1.08233 1.28782 1.49245 1.27406 0.95797 1.04433 0.96932 0.83973 0.77062 0.72415 0.77189 1.22707 1.22100 1.15026 1.19818 0.99672 0.96562 1.32487 0.97017 1.44339 1.16002 1.45138 1.28167 1.21614 0.98851 0.93052 0.85923 1.21981 0.97686 0.98589 0.98602 1.21659 0.98818 0.97780 0.96087 1.21404 0.88423 0.90649 0.96112 0.93027 1.45755 1.11099 1.19442 1.58778 1.18099 0.88023 0.81400 0.77313 1.90691 1.24995 1.74195 1.55599 1.21744 0.94870 0.97161 1.07754 1.22821 0.84976 0.97657 0.92652 1.66713 1.36268 1.06815 1.15897 1.19529 0.84947 0.87694 0.87076 1.84567 1.42875 1.54604 1.46518 1.19085 0.92064 0.98408 1.05409 1.21323 0.99432 0.93431 0.94838 1.21400 0.91562 1.01230 0.99606 1.21549 1.01138 0.93057 0.94535 1.21700 0.97344 0.98111 0.99684 1.19006 0.94057 0.92019 0.94821 1.21366 0.91337 0.91015 0.94757 0.94118 0.93796 0.92894 0.94087 0.88215 0.89225 0.88997 0.74569 0.79150 0.70301 0.81131 0.81671 0.83604 0.84630 0.93921 0.96117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.70 13.70 21.65 0.30 -60.41 16 2 C -0.05 -2.89 4.82 84.86 0.41 -2.48 16 3 Si 1.07 51.42 27.00 68.60 1.85 53.27 16 4 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 6 H -0.23 -9.22 4.72 99.48 0.47 -8.75 16 7 C -0.36 -21.52 9.70 84.03 0.82 -20.70 16 8 H 0.01 0.82 8.06 -2.91 -0.02 0.80 16 9 N -0.61 -30.00 2.71 -698.28 -1.89 -31.89 16 10 C 0.13 5.28 4.36 86.36 0.38 5.65 16 11 C -0.13 -4.01 6.08 30.67 0.19 -3.82 16 12 C -0.11 -2.66 5.35 30.62 0.16 -2.50 16 13 C 0.14 4.69 2.62 45.22 0.12 4.81 16 14 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 15 N -0.70 -18.34 5.03 -445.00 -2.24 -20.58 16 16 C 0.56 17.80 7.73 86.58 0.67 18.47 16 17 O -0.57 -23.61 13.38 -4.18 -0.06 -23.67 16 18 C -0.21 -5.47 6.06 -18.60 -0.11 -5.58 16 19 C 0.16 3.28 10.70 84.85 0.91 4.19 16 20 N -0.54 -11.04 10.25 -307.28 -3.15 -14.19 16 21 C 0.40 7.29 7.79 85.41 0.67 7.95 16 22 O -0.47 -5.48 12.80 -85.39 -1.09 -6.57 16 23 C -0.15 -2.92 5.75 -21.26 -0.12 -3.04 16 24 C -0.07 -0.98 9.58 22.29 0.21 -0.77 16 25 C -0.12 -1.66 9.95 22.06 0.22 -1.44 16 26 C -0.08 -1.65 9.96 22.10 0.22 -1.43 16 27 C -0.15 -4.15 9.32 22.20 0.21 -3.95 16 28 C 0.01 0.15 5.90 -19.96 -0.12 0.04 16 29 C 0.14 5.99 6.12 86.51 0.53 6.52 16 30 H 0.25 16.58 8.73 -92.71 -0.81 15.77 16 31 H 0.04 1.99 5.81 -2.39 -0.01 1.97 16 32 H 0.05 1.94 6.60 -2.39 -0.02 1.93 16 33 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.42 7.11 6.69 -92.71 -0.62 6.49 16 38 H 0.19 2.41 6.42 -2.91 -0.02 2.40 16 39 H 0.43 0.18 9.06 -74.06 -0.67 -0.49 16 40 H 0.17 1.16 7.66 -2.91 -0.02 1.14 16 41 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.14 4.65 5.23 -2.91 -0.02 4.64 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.02 1.01 7.93 -2.39 -0.02 0.99 16 Total: -1.00 -86.47 362.21 -1.44 -87.90 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -0.51 Total: 14.22 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 5.35 Total: 1.92 kcal Atomic # 7 Polarization: -120.09 SS G_CDS: -6.98 Total: -127.08 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.15 Total: -30.24 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 1.85 Total: 53.27 kcal Total: -86.47 -1.44 -87.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008765650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.402 kcal (2) G-P(sol) polarization free energy of solvation -86.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds