Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48500 * 109.47320 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47192 * 300.00369 * 3 2 1 6 6 H 1.48505 * 109.47132 * 60.00264 * 3 2 1 7 7 C 1.38810 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00362 * 198.42014 * 7 2 1 9 9 N 1.36943 * 120.00214 * 18.41268 * 7 2 1 10 10 C 1.46930 * 120.62787 * 26.23820 * 9 7 2 11 11 C 1.53192 * 108.76424 * 126.40733 * 10 9 7 12 12 C 1.53042 * 109.31026 * 54.65457 * 11 10 9 13 13 C 1.53040 * 109.52701 * 298.61364 * 12 11 10 14 14 H 1.08995 * 109.49987 * 301.42137 * 13 12 11 15 15 N 1.46499 * 109.49348 * 181.32294 * 13 12 11 16 16 C 1.34780 * 120.00297 * 155.00161 * 15 13 12 17 17 O 1.21647 * 119.99328 * 0.02562 * 16 15 13 18 18 C 1.47087 * 120.00613 * 179.97438 * 16 15 13 19 19 C 1.42472 * 128.38133 * 354.32728 * 18 16 15 20 20 N 1.29879 * 106.41031 * 179.97438 * 19 18 16 21 21 O 1.20741 * 112.75846 * 0.02562 * 20 19 18 22 22 C 1.34227 * 111.95216 * 359.75365 * 21 20 19 23 23 C 1.47561 * 127.18378 * 180.28230 * 22 21 20 24 24 C 1.39695 * 120.15979 * 130.03202 * 23 22 21 25 25 C 1.37929 * 119.84136 * 179.79555 * 24 23 22 26 26 C 1.38378 * 120.15475 * 0.48648 * 25 24 23 27 27 C 1.38382 * 120.32123 * 359.74300 * 26 25 24 28 28 C 1.37929 * 120.15387 * 0.02627 * 27 26 25 29 29 C 1.46920 * 120.63462 * 206.26771 * 9 7 2 30 30 H 0.97001 * 119.99497 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.59048 * 246.20468 * 10 9 7 32 32 H 1.09010 * 109.58436 * 6.62852 * 10 9 7 33 33 H 1.09004 * 109.50498 * 294.69959 * 11 10 9 34 34 H 1.08993 * 109.48932 * 174.60394 * 11 10 9 35 35 H 1.09002 * 109.45519 * 178.60040 * 12 11 10 36 36 H 1.08999 * 109.45628 * 58.63257 * 12 11 10 37 37 H 0.97002 * 119.99950 * 335.00389 * 15 13 12 38 38 H 1.08006 * 126.79627 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.07789 * 0.02562 * 24 23 22 40 40 H 1.07992 * 119.92548 * 180.20953 * 25 24 23 41 41 H 1.08001 * 119.84264 * 179.72444 * 26 25 24 42 42 H 1.07994 * 119.92548 * 180.02562 * 27 26 25 43 43 H 1.08004 * 120.08234 * 179.97438 * 28 27 26 44 44 H 1.08996 * 109.59266 * 113.79603 * 29 9 7 45 45 H 1.09007 * 109.58652 * 353.36360 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0488 -1.2263 0.2950 9 7 1.3782 -2.3576 -0.3756 10 6 0.2286 -2.3191 -1.2898 11 6 0.5020 -3.2626 -2.4654 12 6 0.8316 -4.6574 -1.9288 13 6 2.0914 -4.5877 -1.0626 14 1 2.9196 -4.1996 -1.6555 15 7 2.4243 -5.9285 -0.5751 16 6 3.6950 -6.2276 -0.2399 17 8 4.5654 -5.3839 -0.3418 18 6 4.0292 -7.5735 0.2500 19 6 3.1464 -8.6528 0.5430 20 7 3.8916 -9.6378 0.9444 21 8 5.0669 -9.3614 0.9520 22 6 5.2896 -8.1047 0.5361 23 6 6.5932 -7.4251 0.4091 24 6 6.9264 -6.7616 -0.7742 25 6 8.1450 -6.1249 -0.8843 26 6 9.0406 -6.1509 0.1703 27 6 8.7193 -6.8103 1.3437 28 6 7.5024 -7.4473 1.4696 29 6 1.8362 -3.6592 0.1289 30 1 -0.4849 0.8401 0.0004 31 1 -0.6687 -2.6426 -0.7625 32 1 0.0906 -1.3034 -1.6609 33 1 1.3454 -2.8870 -3.0449 34 1 -0.3816 -3.3168 -3.1012 35 1 1.0022 -5.3367 -2.7639 36 1 -0.0021 -5.0219 -1.3287 37 1 1.7301 -6.6011 -0.4936 38 1 2.0704 -8.6522 0.4489 39 1 6.2300 -6.7440 -1.5995 40 1 8.4026 -5.6087 -1.7971 41 1 9.9952 -5.6544 0.0770 42 1 9.4229 -6.8262 2.1628 43 1 7.2529 -7.9619 2.3858 44 1 1.0700 -4.0921 0.7720 45 1 2.7591 -3.5279 0.6938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009047516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = 76.490347 kcal Electronic energy + Delta-G solvation = -29310.899099 eV Core-core repulsion = 25297.303625 eV Total energy + Delta-G solvation = -4013.595474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.16774 -39.70464 -39.12690 -37.35602 -34.47240 -34.13609 -33.25013 -32.39355 -31.13683 -30.49405 -29.97559 -28.68660 -25.30986 -25.05404 -23.84680 -22.74017 -22.26343 -22.11536 -21.21324 -20.32933 -19.41644 -18.46302 -17.90333 -17.26808 -16.80109 -16.35147 -15.70822 -15.22956 -14.98809 -14.83366 -14.66636 -14.54928 -13.99050 -13.73785 -13.61572 -13.53816 -13.37374 -13.12993 -13.00254 -12.42508 -12.41844 -11.94735 -11.82238 -11.54129 -11.34292 -11.12791 -10.93400 -10.82224 -10.74490 -10.27951 -10.24026 -10.13305 -9.98620 -9.91255 -9.66864 -9.63439 -9.10611 -8.88731 -8.75154 -8.40907 -6.70702 -5.79102 -3.19539 0.39092 1.24627 1.35712 1.62010 2.54299 3.23696 3.27238 3.38852 3.46965 3.50929 3.57620 3.97627 4.27070 4.44322 4.52314 4.71483 4.75445 4.89791 4.95405 5.08220 5.25184 5.26002 5.35325 5.37265 5.50189 5.53110 5.59517 5.67294 5.68133 5.82846 6.04034 6.10855 6.19019 6.20547 6.24706 6.31843 6.48968 6.58078 6.61203 6.65992 6.71578 6.80677 6.95027 7.34335 7.62372 7.63870 7.82994 7.86607 8.30903 8.44662 9.21292 9.83996 10.38519 11.29638 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.003151 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.922607 B = 8882.630128 C =10510.837535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.128 3.872 14 H 0.089 0.911 15 N -0.712 5.712 16 C 0.588 3.412 17 O -0.518 6.518 18 C -0.238 4.238 19 C 0.026 3.974 20 N -0.363 5.363 21 O 0.110 5.890 22 C 0.083 3.917 23 C -0.037 4.037 24 C -0.044 4.044 25 C -0.121 4.121 26 C -0.097 4.097 27 C -0.127 4.127 28 C -0.085 4.085 29 C 0.142 3.858 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.200 0.800 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.017 0.983 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.932 -18.285 -2.014 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.040 3.960 11 C -0.179 4.179 12 C -0.153 4.153 13 C 0.023 3.977 14 H 0.107 0.893 15 N -0.363 5.363 16 C 0.373 3.627 17 O -0.395 6.395 18 C -0.246 4.246 19 C -0.153 4.153 20 N -0.067 5.067 21 O 0.047 5.953 22 C 0.017 3.983 23 C -0.038 4.038 24 C -0.063 4.063 25 C -0.139 4.139 26 C -0.116 4.116 27 C -0.145 4.145 28 C -0.103 4.103 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.037 0.963 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.227 0.773 38 H 0.217 0.783 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.035 0.965 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.180 -18.753 -1.669 21.896 hybrid contribution -0.372 1.239 -0.096 1.297 sum 10.808 -17.514 -1.764 20.656 Atomic orbital electron populations 1.70058 1.05241 1.25376 1.54180 1.24975 0.95268 0.98369 1.01070 0.86232 0.79552 0.83870 0.77251 1.20154 1.21524 1.21752 1.19279 0.93271 0.84842 1.40456 0.91422 1.44030 1.35210 1.00660 1.51134 1.20878 0.88422 0.99041 0.87677 1.22176 1.00444 0.94985 1.00279 1.21687 0.96635 0.98713 0.98287 1.21798 0.97839 0.80500 0.97559 0.89321 1.45949 1.08380 1.15277 1.66646 1.16722 0.83276 0.84746 0.77962 1.90882 1.47299 1.48258 1.53012 1.21650 0.92141 0.97903 1.12886 1.25062 1.02211 0.88414 0.99624 1.73539 0.89241 1.24021 1.19905 1.84889 1.21102 1.26843 1.62458 1.23114 0.94927 0.84646 0.95610 1.17473 0.89219 1.00849 0.96259 1.21084 0.95819 0.93453 0.95932 1.21071 0.93711 0.99536 0.99583 1.21359 0.99486 0.97536 0.93175 1.21027 0.96630 0.98698 0.98188 1.21218 0.93086 0.98437 0.97579 1.21180 0.97952 0.86858 0.92578 0.93719 0.96340 0.89022 0.92377 0.92669 0.93037 0.92202 0.77277 0.78301 0.85529 0.85247 0.85617 0.85394 0.85461 0.96497 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.15 55.49 0.62 -25.50 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -6.95 9.60 -15.06 -0.14 -7.10 16 8 H 0.07 1.91 7.89 -52.48 -0.41 1.50 16 9 N -0.59 -14.75 3.00 -172.32 -0.52 -15.26 16 10 C 0.17 3.85 5.33 -3.71 -0.02 3.83 16 11 C -0.14 -2.52 6.08 -26.61 -0.16 -2.68 16 12 C -0.11 -1.77 5.35 -26.69 -0.14 -1.91 16 13 C 0.13 2.20 2.60 -67.81 -0.18 2.02 16 14 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 15 N -0.71 -9.81 5.07 -54.87 -0.28 -10.09 16 16 C 0.59 8.87 7.74 -12.67 -0.10 8.77 16 17 O -0.52 -9.59 13.95 5.24 0.07 -9.51 16 18 C -0.24 -3.04 6.32 -104.12 -0.66 -3.70 16 19 C 0.03 0.28 11.69 -16.75 -0.20 0.08 16 20 N -0.36 -4.34 11.98 30.84 0.37 -3.97 16 21 O 0.11 1.31 11.17 16.73 0.19 1.50 16 22 C 0.08 1.03 6.96 -35.22 -0.25 0.79 16 23 C -0.04 -0.45 5.39 -105.00 -0.57 -1.01 16 24 C -0.04 -0.54 7.96 -39.15 -0.31 -0.85 16 25 C -0.12 -1.27 10.03 -39.64 -0.40 -1.67 16 26 C -0.10 -0.90 10.04 -39.48 -0.40 -1.30 16 27 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 28 C -0.08 -0.89 9.79 -39.15 -0.38 -1.27 16 29 C 0.14 3.04 6.09 -3.71 -0.02 3.02 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 2.40 5.96 -51.92 -0.31 2.09 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.39 4.11 7.86 -40.82 -0.32 3.79 16 38 H 0.20 1.38 7.77 -52.48 -0.41 0.97 16 39 H 0.13 1.57 7.65 -52.48 -0.40 1.17 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.36 7.93 -51.93 -0.41 0.94 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -32.53 375.17 -9.35 -41.88 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.02 Total: 3.00 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -4.40 Total: -4.59 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.19 Total: -54.83 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.26 Total: -8.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.53 -9.35 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009047516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.374 kcal (2) G-P(sol) polarization free energy of solvation -32.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds