Wall clock time and date at job start Sat Apr 11 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47004 * 299.99171 * 3 2 1 6 6 H 1.48492 * 109.47626 * 59.99668 * 3 2 1 7 7 C 1.38817 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99557 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99874 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.05404 * 324.57146 * 10 9 7 12 12 C 1.54730 * 111.53031 * 203.75067 * 10 9 7 13 13 C 1.54112 * 106.75625 * 242.34079 * 12 10 9 14 14 C 1.54452 * 104.73091 * 335.68760 * 13 12 10 15 15 H 1.09000 * 113.74145 * 272.41195 * 14 13 12 16 16 C 1.54893 * 109.70599 * 143.80545 * 14 13 12 17 17 N 1.47355 * 105.01232 * 288.54126 * 16 14 13 18 18 C 1.34777 * 125.70427 * 155.08321 * 17 16 14 19 19 O 1.21627 * 119.99722 * 179.69238 * 18 17 16 20 20 C 1.47163 * 119.99968 * 359.97438 * 18 17 16 21 21 C 1.35751 * 125.12965 * 179.71894 * 20 18 17 22 22 C 1.46419 * 106.13834 * 179.97438 * 21 20 18 23 23 N 1.32948 * 133.88451 * 180.02562 * 22 21 20 24 24 C 1.31440 * 121.38363 * 179.97438 * 23 22 21 25 25 C 1.38867 * 121.18153 * 0.02562 * 24 23 22 26 26 C 1.38214 * 119.71231 * 0.02562 * 25 24 23 27 27 C 1.39302 * 118.33415 * 359.97438 * 26 25 24 28 28 O 1.34582 * 133.42174 * 180.37184 * 27 26 25 29 29 C 1.47038 * 108.59382 * 334.82953 * 17 16 14 30 30 C 1.53905 * 109.91674 * 85.76678 * 10 9 7 31 31 H 1.09000 * 112.92280 * 265.08763 * 30 10 9 32 32 H 0.97007 * 120.00295 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00370 * 359.97438 * 9 7 2 34 34 H 1.08995 * 110.72593 * 122.59262 * 12 10 9 35 35 H 1.08997 * 109.25897 * 1.27653 * 12 10 9 36 36 H 1.09009 * 110.38039 * 216.87664 * 13 12 10 37 37 H 1.08997 * 110.48528 * 94.55275 * 13 12 10 38 38 H 1.08997 * 110.45323 * 169.62500 * 16 14 13 39 39 H 1.09002 * 110.29065 * 47.37704 * 16 14 13 40 40 H 1.08002 * 126.93338 * 0.03539 * 21 20 18 41 41 H 1.07997 * 119.40788 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.14209 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.83354 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.83063 * 122.04146 * 29 17 16 45 45 H 1.08996 * 109.82217 * 242.92187 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9674 -3.5634 -0.5930 12 6 1.2009 -4.8073 -0.5792 13 6 1.0168 -5.8376 0.5520 14 6 2.2197 -5.6071 1.4929 15 1 3.1080 -6.1751 1.2168 16 6 1.7799 -5.8150 2.9634 17 7 0.9307 -4.6520 3.2760 18 6 -0.0322 -4.6117 4.2181 19 8 -0.6695 -3.5907 4.3929 20 6 -0.3083 -5.8012 5.0394 21 6 -1.2469 -5.8745 6.0174 22 6 -1.1671 -7.2333 6.5571 23 7 -1.8220 -7.8852 7.5129 24 6 -1.5431 -9.1366 7.8026 25 6 -0.5509 -9.8285 7.1205 26 6 0.1603 -9.1958 6.1184 27 6 -0.1486 -7.8696 5.8247 28 8 0.3303 -6.9842 4.9314 29 6 1.3137 -3.5409 2.3924 30 6 2.4126 -4.0575 1.4436 31 1 3.4128 -3.7403 1.7386 32 1 -0.4851 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 1.7019 -5.2713 -1.4287 35 1 0.2320 -4.4140 -0.8869 36 1 1.0379 -6.8506 0.1499 37 1 0.0809 -5.6596 1.0816 38 1 2.6487 -5.8368 3.6214 39 1 1.2080 -6.7379 3.0601 40 1 -1.9179 -5.0893 6.3331 41 1 -2.0955 -9.6356 8.5850 42 1 -0.3353 -10.8563 7.3726 43 1 0.9359 -9.7165 5.5767 44 1 0.4497 -3.2137 1.8140 45 1 1.6965 -2.7112 2.9866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:27 Heat of formation + Delta-G solvation = 36.997865 kcal Electronic energy + Delta-G solvation = -29645.591175 eV Core-core repulsion = 25630.283178 eV Total energy + Delta-G solvation = -4015.307997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.96829 -40.37313 -39.21499 -38.31653 -35.14756 -33.52784 -33.32214 -31.82485 -30.92792 -30.59885 -29.15472 -28.39789 -25.86221 -24.98182 -23.87028 -23.28450 -22.96977 -21.76179 -20.21283 -19.83604 -18.80179 -18.25096 -17.75757 -17.42591 -16.86518 -16.70712 -16.04392 -15.70320 -15.34913 -14.83370 -14.68191 -14.23399 -13.96328 -13.67911 -13.59597 -13.47488 -13.38575 -13.22369 -13.04057 -12.96847 -12.63407 -12.44477 -12.10441 -11.46642 -11.10971 -10.90941 -10.81357 -10.76117 -10.65286 -10.39676 -10.31910 -10.21950 -10.11118 -9.90016 -9.82987 -9.65746 -9.36781 -8.99949 -8.91426 -8.40134 -6.99322 -5.78524 -3.08703 0.16571 0.75614 1.51815 2.07575 2.92707 3.09141 3.37995 3.43190 3.48421 3.51302 3.70564 4.07369 4.31952 4.46106 4.52857 4.57096 4.58553 4.74922 4.84569 4.97428 5.04701 5.23406 5.37314 5.46994 5.47734 5.51973 5.54829 5.58192 5.60270 5.74989 5.82639 5.89609 5.92306 5.94606 6.03315 6.09332 6.26428 6.29311 6.39302 6.52906 6.57144 6.65466 6.75938 6.78341 6.93239 7.48018 7.54859 7.70001 8.06184 8.39087 9.50425 10.05993 10.39517 11.43452 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.002751 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.428607 B =10174.807671 C =11106.944680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.181 3.819 11 H 0.053 0.947 12 C -0.130 4.130 13 C -0.113 4.113 14 C -0.105 4.105 15 H 0.101 0.899 16 C 0.102 3.898 17 N -0.600 5.600 18 C 0.601 3.399 19 O -0.503 6.503 20 C 0.011 3.989 21 C -0.114 4.114 22 C 0.067 3.933 23 N -0.440 5.440 24 C 0.100 3.900 25 C -0.147 4.147 26 C -0.059 4.059 27 C 0.011 3.989 28 O -0.172 6.172 29 C 0.128 3.872 30 C -0.117 4.117 31 H 0.083 0.917 32 H 0.256 0.744 33 H 0.385 0.615 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.096 0.904 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -23.555 10.900 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.070 3.930 11 H 0.071 0.929 12 C -0.168 4.168 13 C -0.150 4.150 14 C -0.124 4.124 15 H 0.119 0.881 16 C -0.020 4.020 17 N -0.332 5.332 18 C 0.386 3.614 19 O -0.380 6.380 20 C -0.041 4.041 21 C -0.135 4.135 22 C -0.063 4.063 23 N -0.149 5.149 24 C -0.066 4.066 25 C -0.167 4.167 26 C -0.086 4.086 27 C -0.040 4.040 28 O -0.073 6.073 29 C 0.008 3.992 30 C -0.140 4.140 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.220 0.780 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.196 0.804 41 H 0.184 0.816 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.114 0.886 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.648 -22.341 11.220 25.054 hybrid contribution 0.765 0.435 -0.214 0.906 sum 2.413 -21.906 11.006 24.633 Atomic orbital electron populations 1.69659 1.05096 1.25723 1.56966 1.24750 0.95458 0.97718 1.02600 0.86164 0.78772 0.84296 0.77197 1.20574 1.21898 1.21836 1.19229 0.90977 0.83920 1.43438 0.91072 1.42569 1.05705 0.99689 1.87833 1.20808 0.94672 0.86319 0.91226 0.92919 1.22549 1.01202 0.95851 0.97211 1.22200 0.97608 0.98640 0.96593 1.23222 0.98729 0.97612 0.92850 0.88097 1.22455 0.94299 0.88723 0.96561 1.48538 1.33823 1.15945 1.34899 1.16238 0.80767 0.84715 0.79641 1.90957 1.49510 1.29476 1.68023 1.22330 0.96223 0.85410 1.00131 1.22501 1.00045 0.95052 0.95905 1.20659 0.95189 0.94800 0.95605 1.67046 1.25357 1.09103 1.13440 1.22855 0.95602 0.89391 0.98743 1.22062 0.96854 1.01655 0.96082 1.20499 1.00702 0.89336 0.98050 1.20656 0.97446 0.92989 0.92902 1.84188 1.54158 1.19319 1.49596 1.22089 0.99731 0.86831 0.90566 1.23608 0.98028 0.92711 0.99630 0.89818 0.93422 0.78042 0.91903 0.91413 0.92192 0.91767 0.91391 0.90173 0.80411 0.81640 0.83176 0.83544 0.88634 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.90 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.48 9.95 -15.06 -0.15 -6.63 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -16.88 3.61 -52.08 -0.19 -17.06 16 10 C 0.18 3.29 3.24 -66.55 -0.22 3.08 16 11 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 12 C -0.13 -1.98 6.64 -25.24 -0.17 -2.14 16 13 C -0.11 -1.47 5.90 -25.39 -0.15 -1.62 16 14 C -0.10 -1.29 4.22 -87.12 -0.37 -1.66 16 15 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.10 1.27 5.47 -2.58 -0.01 1.26 16 17 N -0.60 -9.66 2.88 -172.08 -0.50 -10.16 16 18 C 0.60 10.36 7.83 -12.64 -0.10 10.26 16 19 O -0.50 -10.54 17.16 5.25 0.09 -10.45 16 20 C 0.01 0.16 6.89 -36.85 -0.25 -0.09 16 21 C -0.11 -1.57 10.81 -37.18 -0.40 -1.97 16 22 C 0.07 0.87 7.52 -83.18 -0.63 0.24 16 23 N -0.44 -5.27 10.41 -9.87 -0.10 -5.37 16 24 C 0.10 0.80 11.17 -17.49 -0.20 0.60 16 25 C -0.15 -0.90 10.09 -39.36 -0.40 -1.30 16 26 C -0.06 -0.46 10.19 -39.19 -0.40 -0.86 16 27 C 0.01 0.12 7.42 -38.27 -0.28 -0.16 16 28 O -0.17 -2.16 7.67 3.37 0.03 -2.13 16 29 C 0.13 2.40 5.42 -3.18 -0.02 2.38 16 30 C -0.12 -1.88 3.92 -87.84 -0.34 -2.23 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.38 9.87 6.93 -40.82 -0.28 9.59 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.15 7.69 -51.93 -0.40 0.75 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.95 7.39 -51.93 -0.38 0.56 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.92 6.10 -51.93 -0.32 0.60 16 40 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 43 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.10 2.10 6.16 -51.93 -0.32 1.78 16 45 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 367.45 15.07 5.54 5.54 Total: -1.00 -32.74 367.45 -9.51 -42.25 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.90 Total: 8.39 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -4.18 Total: -1.20 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.06 Total: -59.60 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.12 Total: -12.58 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.74 -9.51 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.250 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds