Wall clock time and date at job start Sat Apr 11 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47004 * 299.99171 * 3 2 1 6 6 H 1.48492 * 109.47626 * 59.99668 * 3 2 1 7 7 C 1.38817 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00518 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99557 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99874 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.05404 * 324.57146 * 10 9 7 12 12 C 1.54730 * 111.53031 * 203.75067 * 10 9 7 13 13 C 1.54112 * 106.75625 * 242.34079 * 12 10 9 14 14 C 1.54452 * 104.73091 * 335.68760 * 13 12 10 15 15 H 1.09000 * 113.74145 * 272.41195 * 14 13 12 16 16 C 1.54893 * 109.70599 * 143.80545 * 14 13 12 17 17 N 1.47355 * 105.01232 * 288.54126 * 16 14 13 18 18 C 1.34777 * 125.70427 * 155.08321 * 17 16 14 19 19 O 1.21627 * 119.99722 * 179.69238 * 18 17 16 20 20 C 1.47163 * 119.99968 * 359.97438 * 18 17 16 21 21 C 1.35751 * 125.12965 * 179.71894 * 20 18 17 22 22 C 1.46419 * 106.13834 * 179.97438 * 21 20 18 23 23 N 1.32948 * 133.88451 * 180.02562 * 22 21 20 24 24 C 1.31440 * 121.38363 * 179.97438 * 23 22 21 25 25 C 1.38867 * 121.18153 * 0.02562 * 24 23 22 26 26 C 1.38214 * 119.71231 * 0.02562 * 25 24 23 27 27 C 1.39302 * 118.33415 * 359.97438 * 26 25 24 28 28 O 1.34582 * 133.42174 * 180.37184 * 27 26 25 29 29 C 1.47038 * 108.59382 * 334.82953 * 17 16 14 30 30 C 1.53905 * 109.91674 * 85.76678 * 10 9 7 31 31 H 1.09000 * 112.92280 * 265.08763 * 30 10 9 32 32 H 0.97007 * 120.00295 * 0.02562 * 1 2 3 33 33 H 0.96999 * 120.00370 * 359.97438 * 9 7 2 34 34 H 1.08995 * 110.72593 * 122.59262 * 12 10 9 35 35 H 1.08997 * 109.25897 * 1.27653 * 12 10 9 36 36 H 1.09009 * 110.38039 * 216.87664 * 13 12 10 37 37 H 1.08997 * 110.48528 * 94.55275 * 13 12 10 38 38 H 1.08997 * 110.45323 * 169.62500 * 16 14 13 39 39 H 1.09002 * 110.29065 * 47.37704 * 16 14 13 40 40 H 1.08002 * 126.93338 * 0.03539 * 21 20 18 41 41 H 1.07997 * 119.40788 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.14209 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.83354 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.83063 * 122.04146 * 29 17 16 45 45 H 1.08996 * 109.82217 * 242.92187 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9674 -3.5634 -0.5930 12 6 1.2009 -4.8073 -0.5792 13 6 1.0168 -5.8376 0.5520 14 6 2.2197 -5.6071 1.4929 15 1 3.1080 -6.1751 1.2168 16 6 1.7799 -5.8150 2.9634 17 7 0.9307 -4.6520 3.2760 18 6 -0.0322 -4.6117 4.2181 19 8 -0.6695 -3.5907 4.3929 20 6 -0.3083 -5.8012 5.0394 21 6 -1.2469 -5.8745 6.0174 22 6 -1.1671 -7.2333 6.5571 23 7 -1.8220 -7.8852 7.5129 24 6 -1.5431 -9.1366 7.8026 25 6 -0.5509 -9.8285 7.1205 26 6 0.1603 -9.1958 6.1184 27 6 -0.1486 -7.8696 5.8247 28 8 0.3303 -6.9842 4.9314 29 6 1.3137 -3.5409 2.3924 30 6 2.4126 -4.0575 1.4436 31 1 3.4128 -3.7403 1.7386 32 1 -0.4851 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 1.7019 -5.2713 -1.4287 35 1 0.2320 -4.4140 -0.8869 36 1 1.0379 -6.8506 0.1499 37 1 0.0809 -5.6596 1.0816 38 1 2.6487 -5.8368 3.6214 39 1 1.2080 -6.7379 3.0601 40 1 -1.9179 -5.0893 6.3331 41 1 -2.0955 -9.6356 8.5850 42 1 -0.3353 -10.8563 7.3726 43 1 0.9359 -9.7165 5.5767 44 1 0.4497 -3.2137 1.8140 45 1 1.6965 -2.7112 2.9866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026316516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:26 Heat of formation + Delta-G solvation = 15.619538 kcal Electronic energy + Delta-G solvation = -29646.518209 eV Core-core repulsion = 25630.283178 eV Total energy + Delta-G solvation = -4016.235030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.86276 -41.64893 -40.07209 -39.60795 -36.70501 -35.01205 -34.31406 -32.70066 -32.63697 -31.62451 -30.28684 -29.89235 -27.21230 -26.23541 -25.03392 -24.66069 -24.04593 -22.72247 -21.35085 -20.98930 -20.23765 -19.34140 -19.27091 -18.65790 -17.90109 -17.42012 -17.22142 -17.07777 -16.67374 -16.36329 -16.00549 -15.55752 -15.02449 -14.88979 -14.72780 -14.64370 -14.51727 -14.44995 -14.12923 -14.03105 -13.72788 -13.58386 -13.39209 -13.17743 -12.94854 -12.49463 -12.32043 -12.11134 -11.92081 -11.69379 -11.69190 -11.59681 -11.45716 -11.42989 -11.41117 -10.88897 -10.53767 -10.19641 -9.98384 -9.64487 -8.97751 -7.93241 -5.21061 -0.70721 0.06151 0.59753 1.07157 1.44926 1.46460 1.55449 1.76994 1.83833 2.55809 2.66852 2.80179 3.28503 3.35172 3.39597 3.45737 3.66395 3.73177 3.76742 3.93646 4.13129 4.19057 4.24466 4.29336 4.33320 4.40130 4.42846 4.50022 4.61773 4.68379 4.71752 4.75361 4.81535 4.92445 4.96735 5.03264 5.06139 5.10454 5.19060 5.25066 5.32203 5.40917 5.48164 5.52069 5.58595 5.72699 6.25900 6.29249 6.72092 6.78965 7.34290 8.11691 8.32048 9.30443 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.002751 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.428607 B =10174.807671 C =11106.944680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.295 1.295 6 H -0.303 1.303 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.730 5.730 10 C 0.170 3.830 11 H 0.058 0.942 12 C -0.123 4.123 13 C -0.107 4.107 14 C -0.082 4.082 15 H 0.147 0.853 16 C 0.101 3.899 17 N -0.598 5.598 18 C 0.597 3.403 19 O -0.560 6.560 20 C -0.004 4.004 21 C -0.118 4.118 22 C 0.034 3.966 23 N -0.478 5.478 24 C 0.100 3.900 25 C -0.121 4.121 26 C -0.058 4.058 27 C 0.000 4.000 28 O -0.166 6.166 29 C 0.137 3.863 30 C -0.112 4.112 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.369 0.631 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.169 0.831 41 H 0.201 0.799 42 H 0.202 0.798 43 H 0.183 0.817 44 H 0.054 0.946 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.128 -28.982 11.630 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.223 1.223 6 H -0.230 1.230 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.369 5.369 10 C 0.060 3.940 11 H 0.076 0.924 12 C -0.162 4.162 13 C -0.145 4.145 14 C -0.101 4.101 15 H 0.165 0.835 16 C -0.020 4.020 17 N -0.329 5.329 18 C 0.385 3.615 19 O -0.440 6.440 20 C -0.055 4.055 21 C -0.139 4.139 22 C -0.094 4.094 23 N -0.188 5.188 24 C -0.066 4.066 25 C -0.140 4.140 26 C -0.084 4.084 27 C -0.050 4.050 28 O -0.067 6.067 29 C 0.015 3.985 30 C -0.134 4.134 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.201 0.799 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.116 0.884 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.116 0.884 40 H 0.187 0.813 41 H 0.218 0.782 42 H 0.219 0.781 43 H 0.200 0.800 44 H 0.072 0.928 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.489 -27.842 11.932 30.622 hybrid contribution -0.124 1.842 -0.296 1.870 sum 4.365 -25.999 11.636 28.817 Atomic orbital electron populations 1.69831 1.06727 1.25652 1.59986 1.25524 0.96188 1.01061 1.04318 0.85174 0.78608 0.80420 0.76228 1.18462 1.22262 1.23044 1.19639 0.91465 0.84958 1.39963 0.90096 1.42771 1.05163 1.01086 1.87875 1.21156 0.94840 0.85177 0.92780 0.92385 1.22494 0.99437 0.95341 0.98886 1.22183 0.96862 0.99791 0.95675 1.23313 0.99906 0.94414 0.92447 0.83532 1.22743 0.94552 0.87676 0.97061 1.48578 1.33863 1.16467 1.33962 1.16604 0.80181 0.85069 0.79653 1.90908 1.51478 1.31871 1.69775 1.21496 0.97714 0.85674 1.00657 1.22612 0.99422 0.96141 0.95747 1.20579 0.97047 0.94452 0.97345 1.67032 1.26552 1.11204 1.14013 1.23657 0.95815 0.88145 0.98994 1.22673 0.94326 1.03318 0.93668 1.21102 1.01391 0.87530 0.98347 1.21151 0.97289 0.94107 0.92477 1.84101 1.53880 1.18605 1.50104 1.21736 0.98903 0.87299 0.90544 1.23480 0.97027 0.96067 0.96854 0.88897 0.94399 0.79908 0.89107 0.94113 0.88404 0.94309 0.89224 0.88415 0.81326 0.78239 0.78142 0.79973 0.92807 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.60 13.06 21.65 0.28 -61.31 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 7 C -0.23 -12.44 9.95 84.04 0.84 -11.60 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.73 -35.85 3.61 -318.70 -1.15 -37.00 16 10 C 0.17 6.10 3.24 45.89 0.15 6.25 16 11 H 0.06 2.04 8.10 -2.39 -0.02 2.02 16 12 C -0.12 -3.61 6.64 31.56 0.21 -3.40 16 13 C -0.11 -2.53 5.90 31.46 0.19 -2.35 16 14 C -0.08 -1.73 4.22 -8.53 -0.04 -1.77 16 15 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 16 C 0.10 2.26 5.47 86.86 0.48 2.74 16 17 N -0.60 -19.96 2.88 -816.60 -2.35 -22.32 16 18 C 0.60 22.21 7.83 86.59 0.68 22.89 16 19 O -0.56 -26.07 17.16 -4.12 -0.07 -26.14 16 20 C 0.00 -0.11 6.89 24.04 0.17 0.06 16 21 C -0.12 -3.49 10.81 23.82 0.26 -3.24 16 22 C 0.03 0.86 7.52 41.70 0.31 1.18 16 23 N -0.48 -10.88 10.41 -185.13 -1.93 -12.81 16 24 C 0.10 1.22 11.17 84.90 0.95 2.17 16 25 C -0.12 -0.81 10.09 22.41 0.23 -0.59 16 26 C -0.06 -0.63 10.19 22.52 0.23 -0.40 16 27 C 0.00 0.00 7.42 23.12 0.17 0.17 16 28 O -0.17 -3.99 7.67 -10.85 -0.08 -4.07 16 29 C 0.14 5.45 5.42 86.65 0.47 5.92 16 30 C -0.11 -3.51 3.92 -8.99 -0.04 -3.54 16 31 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.25 15.38 8.31 -92.70 -0.77 14.61 16 33 H 0.37 20.33 6.93 -92.71 -0.64 19.69 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.42 7.69 -2.39 -0.02 1.40 16 36 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.04 1.12 7.39 -2.39 -0.02 1.11 16 38 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 1.93 6.10 -2.39 -0.01 1.92 16 40 H 0.17 5.04 8.06 -2.91 -0.02 5.02 16 41 H 0.20 0.88 8.06 -2.91 -0.02 0.85 16 42 H 0.20 -0.61 8.06 -2.91 -0.02 -0.63 16 43 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 44 H 0.05 2.60 6.16 -2.39 -0.01 2.59 16 45 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -81.14 367.45 2.82 -78.32 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.39 Total: 25.63 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 5.71 Total: 10.35 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -5.15 Total: -133.44 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.15 Total: -30.20 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -81.14 2.82 -78.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.940 kcal (2) G-P(sol) polarization free energy of solvation -81.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds