Wall clock time and date at job start Sat Apr 11 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47239 * 270.00063 * 3 2 1 5 5 H 1.48499 * 109.47168 * 30.00211 * 3 2 1 6 6 H 1.48497 * 109.46853 * 149.99947 * 3 2 1 7 7 C 1.38819 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99869 * 359.97438 * 7 2 1 9 9 N 1.36930 * 119.99831 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00248 * 179.97438 * 9 7 2 11 11 H 1.09008 * 110.57593 * 32.27461 * 10 9 7 12 12 C 1.56002 * 110.52513 * 269.56522 * 10 9 7 13 13 C 1.57067 * 106.03506 * 233.94943 * 12 10 9 14 14 C 1.51555 * 101.47794 * 335.33072 * 13 12 10 15 15 H 1.09000 * 111.11605 * 287.59042 * 14 13 12 16 16 C 1.51515 * 123.36197 * 151.79587 * 14 13 12 17 17 N 1.49625 * 102.48921 * 207.62695 * 16 14 13 18 18 C 1.34777 * 126.07690 * 205.65968 * 17 16 14 19 19 O 1.21628 * 120.00602 * 180.02562 * 18 17 16 20 20 C 1.47171 * 119.99568 * 0.02562 * 18 17 16 21 21 C 1.35750 * 125.12978 * 179.97438 * 20 18 17 22 22 C 1.46420 * 106.14073 * 180.02562 * 21 20 18 23 23 N 1.32946 * 133.88587 * 179.97438 * 22 21 20 24 24 C 1.31431 * 121.38363 * 179.78439 * 23 22 21 25 25 C 1.38868 * 121.18297 * 0.51055 * 24 23 22 26 26 C 1.38211 * 119.70792 * 359.48656 * 25 24 23 27 27 C 1.39294 * 118.33920 * 0.24907 * 26 25 24 28 28 O 1.34584 * 133.43157 * 179.97438 * 27 26 25 29 29 C 1.49292 * 107.85493 * 25.92229 * 17 16 14 30 30 C 1.49643 * 104.71145 * 5.97928 * 29 17 16 31 31 H 1.09004 * 107.62845 * 78.66923 * 30 29 17 32 32 H 0.96992 * 119.99997 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00306 * 359.97438 * 9 7 2 34 34 H 1.08997 * 110.19165 * 353.48429 * 12 10 9 35 35 H 1.09002 * 110.19503 * 115.25524 * 12 10 9 36 36 H 1.09000 * 111.32388 * 217.22448 * 13 12 10 37 37 H 1.09008 * 110.91272 * 93.25725 * 13 12 10 38 38 H 1.09002 * 110.80166 * 89.38419 * 16 14 13 39 39 H 1.08993 * 110.97449 * 325.95262 * 16 14 13 40 40 H 1.08001 * 126.92940 * 0.02680 * 21 20 18 41 41 H 1.07997 * 119.41147 * 180.25492 * 24 23 22 42 42 H 1.08002 * 120.14829 * 179.76609 * 25 24 23 43 43 H 1.08005 * 120.83027 * 180.23724 * 26 25 24 44 44 H 1.09000 * 110.39705 * 124.92198 * 29 17 16 45 45 H 1.09006 * 110.39327 * 247.32192 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5567 -3.2340 -0.5453 12 6 4.3947 -2.9394 1.4609 13 6 5.9443 -3.1810 1.5471 14 6 6.2879 -3.4549 0.0966 15 1 5.9263 -4.4350 -0.2143 16 6 7.6440 -3.1557 -0.5092 17 7 7.3103 -2.9189 -1.9484 18 6 8.1431 -3.0882 -2.9945 19 8 7.7543 -2.8615 -4.1244 20 6 9.5232 -3.5474 -2.7695 21 6 10.4467 -3.7527 -3.7430 22 6 11.6627 -4.2018 -3.0624 23 7 12.8763 -4.5507 -3.4782 24 6 13.8102 -4.9206 -2.6307 25 6 13.5626 -4.9719 -1.2652 26 6 12.3170 -4.6188 -0.7813 27 6 11.3409 -4.2241 -1.6932 28 8 10.0610 -3.8281 -1.5650 29 6 5.8929 -2.4555 -2.0195 30 6 5.4752 -2.2901 -0.5921 31 1 5.8858 -1.3454 -0.2353 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3621 0.0004 34 1 4.0896 -2.1687 2.1688 35 1 3.8651 -3.8695 1.6669 36 1 6.1769 -4.0430 2.1723 37 1 6.4576 -2.2895 1.9078 38 1 8.3126 -4.0100 -0.4024 39 1 8.0831 -2.2641 -0.0619 40 1 10.3116 -3.6128 -4.8054 41 1 14.7865 -5.1936 -3.0031 42 1 14.3412 -5.2819 -0.5840 43 1 12.1058 -4.6483 0.2775 44 1 5.8302 -1.5045 -2.5482 45 1 5.2722 -3.2055 -2.5099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:29 Heat of formation + Delta-G solvation = 51.214249 kcal Electronic energy + Delta-G solvation = -29000.622744 eV Core-core repulsion = 24985.931216 eV Total energy + Delta-G solvation = -4014.691528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.12927 -40.69787 -39.41229 -38.71053 -35.62472 -33.67675 -33.53123 -31.98127 -31.24636 -30.93514 -29.57637 -28.83183 -26.03834 -25.14919 -23.96048 -23.24209 -22.62387 -21.90191 -20.51832 -20.30894 -19.40017 -18.35308 -18.00728 -17.52899 -17.06479 -16.89730 -16.46818 -15.99663 -15.36605 -15.08202 -14.79759 -14.38286 -14.32840 -13.98615 -13.78430 -13.66817 -13.52539 -13.48335 -13.12290 -12.99051 -12.77214 -12.54549 -12.10713 -11.95940 -11.67095 -11.25585 -11.05465 -10.97777 -10.87162 -10.61523 -10.43183 -10.38668 -10.13030 -9.96252 -9.89156 -9.61085 -9.50846 -9.20579 -8.98305 -8.84102 -7.33421 -5.81010 -3.17492 0.00095 0.62588 1.33154 1.87973 2.52684 2.81514 3.24523 3.34107 3.37321 3.43105 3.45960 3.93029 3.94519 4.18863 4.34003 4.41391 4.55168 4.60602 4.70203 4.82139 4.87604 5.07360 5.09959 5.15509 5.23409 5.37256 5.40907 5.43621 5.47016 5.55902 5.61198 5.64376 5.73286 5.74438 5.81041 5.87657 5.94790 5.97802 6.10827 6.17155 6.28290 6.39813 6.45333 6.64534 6.87066 7.13271 7.35106 7.70026 7.94335 8.37912 9.15238 9.87750 10.06520 11.37096 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.002378 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.077817 B =11771.771302 C =12353.150950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.744 5.744 10 C 0.205 3.795 11 H 0.067 0.933 12 C -0.142 4.142 13 C -0.101 4.101 14 C -0.124 4.124 15 H 0.090 0.910 16 C 0.115 3.885 17 N -0.611 5.611 18 C 0.609 3.391 19 O -0.510 6.510 20 C 0.005 3.995 21 C -0.108 4.108 22 C 0.065 3.935 23 N -0.440 5.440 24 C 0.101 3.899 25 C -0.144 4.144 26 C -0.059 4.059 27 C 0.013 3.987 28 O -0.172 6.172 29 C 0.133 3.867 30 C -0.126 4.126 31 H 0.074 0.926 32 H 0.260 0.740 33 H 0.361 0.639 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.081 0.919 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.438 -11.607 0.940 30.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.109 0.891 9 N -0.386 5.386 10 C 0.094 3.906 11 H 0.085 0.915 12 C -0.182 4.182 13 C -0.139 4.139 14 C -0.143 4.143 15 H 0.108 0.892 16 C -0.006 4.006 17 N -0.344 5.344 18 C 0.396 3.604 19 O -0.387 6.387 20 C -0.046 4.046 21 C -0.129 4.129 22 C -0.065 4.065 23 N -0.149 5.149 24 C -0.064 4.064 25 C -0.164 4.164 26 C -0.086 4.086 27 C -0.037 4.037 28 O -0.073 6.073 29 C 0.013 3.987 30 C -0.146 4.146 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.195 0.805 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.196 0.804 41 H 0.185 0.815 42 H 0.170 0.830 43 H 0.166 0.834 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 27.944 -11.454 -0.413 30.204 hybrid contribution 0.564 1.236 0.914 1.637 sum 28.509 -10.219 0.500 30.289 Atomic orbital electron populations 1.69694 1.05109 1.25875 1.57245 1.24680 0.95220 0.97203 1.01901 0.86579 0.79156 0.85085 0.77842 1.21026 1.21756 1.20380 1.19071 0.80477 0.94729 1.43286 0.89096 1.42856 1.04113 1.01710 1.89887 1.19896 0.88328 0.89771 0.92556 0.91534 1.23881 0.92805 1.01466 1.00093 1.21996 0.97615 1.00990 0.93324 1.22574 0.94317 0.99911 0.97533 0.89151 1.21955 0.97290 1.01731 0.79623 1.49772 1.13339 1.64703 1.06630 1.16229 0.81179 0.78740 0.84299 1.90923 1.74384 1.51850 1.21582 1.22129 0.95094 1.04809 0.82615 1.22502 0.88660 1.00933 1.00837 1.20644 0.93281 1.02195 0.90358 1.67044 0.99330 1.09206 1.39330 1.22877 0.98094 0.96054 0.89419 1.22096 0.96541 1.00299 0.97441 1.20528 0.90232 0.98261 0.99548 1.20643 0.84809 1.01696 0.96593 1.84164 1.22606 1.69742 1.30762 1.21104 0.79301 1.00764 0.97511 1.22147 0.99344 0.99302 0.93836 0.90780 0.93013 0.80543 0.90655 0.92151 0.91748 0.91569 0.89639 0.90534 0.80388 0.81526 0.83038 0.83414 0.90067 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.97 55.49 0.78 -27.97 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.67 27.74 -169.99 -4.71 16.95 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.64 10.44 -15.06 -0.16 -6.80 16 8 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 9 N -0.74 -16.47 4.90 -53.44 -0.26 -16.73 16 10 C 0.21 3.55 3.45 -67.95 -0.23 3.31 16 11 H 0.07 1.21 8.09 -51.92 -0.42 0.79 16 12 C -0.14 -2.12 6.75 -22.92 -0.15 -2.28 16 13 C -0.10 -1.14 6.70 -25.26 -0.17 -1.31 16 14 C -0.12 -1.40 3.10 -89.45 -0.28 -1.67 16 15 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 16 C 0.12 1.22 5.95 -3.05 -0.02 1.21 16 17 N -0.61 -7.95 3.42 -172.96 -0.59 -8.54 16 18 C 0.61 8.54 7.86 -12.63 -0.10 8.44 16 19 O -0.51 -8.60 17.19 5.25 0.09 -8.51 16 20 C 0.01 0.07 6.91 -36.85 -0.25 -0.19 16 21 C -0.11 -1.26 10.81 -37.18 -0.40 -1.66 16 22 C 0.06 0.73 7.52 -83.17 -0.63 0.11 16 23 N -0.44 -4.64 10.41 -9.87 -0.10 -4.75 16 24 C 0.10 0.69 11.17 -17.49 -0.20 0.49 16 25 C -0.14 -0.73 10.09 -39.36 -0.40 -1.13 16 26 C -0.06 -0.40 10.19 -39.20 -0.40 -0.79 16 27 C 0.01 0.13 7.42 -38.27 -0.28 -0.15 16 28 O -0.17 -1.86 7.72 3.39 0.03 -1.84 16 29 C 0.13 1.89 6.82 -4.15 -0.03 1.86 16 30 C -0.13 -1.79 2.20 -91.26 -0.20 -1.99 16 31 H 0.07 1.09 7.76 -51.93 -0.40 0.68 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.36 7.95 5.52 -40.82 -0.23 7.73 16 34 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 38 H 0.09 0.82 6.23 -51.93 -0.32 0.50 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.15 0.23 8.06 -52.49 -0.42 -0.20 16 43 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -33.42 370.15 -9.22 -42.65 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.03 Total: 5.63 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.99 Total: -2.47 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -0.18 Total: -57.99 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.12 Total: -10.34 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.42 -9.22 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.862 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds