Wall clock time and date at job start Sat Apr 11 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21624 * 120.00207 * 179.97438 * 18 17 16 20 20 C 1.47177 * 119.99806 * 359.96517 * 18 17 16 21 21 C 1.35745 * 125.13006 * 179.97438 * 20 18 17 22 22 C 1.46421 * 106.13968 * 180.02562 * 21 20 18 23 23 N 1.32939 * 133.88644 * 180.02562 * 22 21 20 24 24 C 1.31438 * 121.38462 * 179.97438 * 23 22 21 25 25 C 1.38861 * 121.18173 * 0.02562 * 24 23 22 26 26 C 1.38211 * 119.71335 * 0.02562 * 25 24 23 27 27 C 1.39295 * 118.33418 * 359.97438 * 26 25 24 28 28 O 1.34587 * 133.42774 * 180.37608 * 27 26 25 29 29 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 30 30 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 31 31 H 1.09001 * 109.99421 * 198.25759 * 30 10 9 32 32 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 34 34 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 35 35 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 36 36 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 37 37 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 38 38 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 39 39 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 40 40 H 1.07998 * 126.93311 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.40755 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.14307 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.83350 * 179.97438 * 26 25 24 44 44 H 1.09000 * 110.84547 * 216.66722 * 29 17 16 45 45 H 1.08998 * 111.01935 * 93.13449 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5534 -3.2306 -0.5578 12 6 4.3969 -2.9434 1.4479 13 6 5.9428 -2.8106 1.6439 14 6 6.2867 -1.7445 0.6313 15 1 5.8780 -0.7864 0.9525 16 6 7.6350 -1.5433 -0.0027 17 7 7.3403 -1.1104 -1.3999 18 6 8.2432 -0.6864 -2.3063 19 8 7.8795 -0.3587 -3.4196 20 6 9.6693 -0.6196 -1.9486 21 6 10.6639 -0.2104 -2.7768 22 6 11.9035 -0.3086 -2.0036 23 7 13.1798 -0.0508 -2.2718 24 6 14.1187 -0.2313 -1.3699 25 6 13.8141 -0.7000 -0.0988 26 6 12.5022 -0.9842 0.2304 27 6 11.5201 -0.7871 -0.7376 28 8 10.1846 -0.9530 -0.7477 29 6 5.8640 -1.2311 -1.6168 30 6 5.4776 -2.2877 -0.6110 31 1 5.8864 -3.2532 -0.9092 32 1 -0.4850 0.8402 -0.0004 33 1 3.8646 -0.3622 -0.0056 34 1 3.8714 -2.3060 2.1590 35 1 4.0896 -3.9816 1.5738 36 1 6.4481 -3.7479 1.4112 37 1 6.1821 -2.4808 2.6548 38 1 8.1960 -2.4780 -0.0057 39 1 8.1922 -0.7691 0.5247 40 1 10.5618 0.1201 -3.7998 41 1 15.1456 -0.0111 -1.6220 42 1 14.5991 -0.8426 0.6292 43 1 12.2450 -1.3500 1.2135 44 1 5.6470 -1.5640 -2.6318 45 1 5.3591 -0.2891 -1.4031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:32 Heat of formation + Delta-G solvation = 51.323687 kcal Electronic energy + Delta-G solvation = -29369.746761 eV Core-core repulsion = 25355.059978 eV Total energy + Delta-G solvation = -4014.686782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.09117 -40.72060 -39.40045 -38.69729 -35.53934 -33.64456 -33.46697 -31.94687 -31.20167 -30.87122 -29.46230 -28.93066 -26.04246 -25.15748 -23.92377 -23.23120 -22.83379 -21.88001 -20.40098 -20.13190 -19.16572 -18.34069 -17.93840 -17.81492 -17.00342 -16.85395 -16.27068 -15.97486 -15.36914 -15.03651 -14.64396 -14.35318 -14.30446 -14.02075 -13.93430 -13.71706 -13.50487 -13.47036 -13.07893 -12.89800 -12.74019 -12.54261 -12.11189 -12.00175 -11.49667 -11.22351 -11.02696 -10.98580 -10.79707 -10.57255 -10.47880 -10.30972 -10.18310 -9.93979 -9.80917 -9.61025 -9.47924 -9.16887 -8.98924 -8.79205 -7.33438 -5.81444 -3.17727 0.03118 0.65212 1.36331 1.92389 2.57422 2.85517 3.27124 3.32860 3.36400 3.43027 3.49012 3.95758 3.96927 4.22898 4.36795 4.46136 4.54503 4.66573 4.73885 4.87249 4.95302 5.09435 5.11593 5.27199 5.29685 5.37467 5.42363 5.45889 5.47849 5.50241 5.58838 5.67188 5.73826 5.78223 5.83252 5.91278 6.03595 6.04457 6.17361 6.23300 6.32346 6.42588 6.44115 6.64170 6.88239 7.18924 7.37630 7.74187 7.94410 8.37582 9.14836 9.87398 10.05952 11.36742 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.002709 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.426429 B =10334.420938 C =10946.713357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.879 3.121 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.201 3.799 11 H 0.068 0.932 12 C -0.144 4.144 13 C -0.095 4.095 14 C -0.131 4.131 15 H 0.086 0.914 16 C 0.122 3.878 17 N -0.612 5.612 18 C 0.609 3.391 19 O -0.510 6.510 20 C 0.006 3.994 21 C -0.109 4.109 22 C 0.065 3.935 23 N -0.440 5.440 24 C 0.101 3.899 25 C -0.144 4.144 26 C -0.059 4.059 27 C 0.014 3.986 28 O -0.172 6.172 29 C 0.131 3.869 30 C -0.125 4.125 31 H 0.083 0.917 32 H 0.260 0.740 33 H 0.360 0.640 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.088 0.912 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.440 -4.959 2.751 29.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.090 3.910 11 H 0.086 0.914 12 C -0.185 4.185 13 C -0.134 4.134 14 C -0.150 4.150 15 H 0.104 0.896 16 C 0.001 3.999 17 N -0.345 5.345 18 C 0.396 3.604 19 O -0.388 6.388 20 C -0.046 4.046 21 C -0.130 4.130 22 C -0.065 4.065 23 N -0.149 5.149 24 C -0.065 4.065 25 C -0.164 4.164 26 C -0.086 4.086 27 C -0.037 4.037 28 O -0.072 6.072 29 C 0.011 3.989 30 C -0.145 4.145 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.194 0.806 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.196 0.804 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.166 0.834 44 H 0.106 0.894 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.993 -4.594 1.452 28.405 hybrid contribution 0.539 1.052 0.927 1.503 sum 28.532 -3.542 2.379 28.850 Atomic orbital electron populations 1.69696 1.05074 1.25836 1.57292 1.24658 0.95182 0.97079 1.01943 0.86655 0.79155 0.85332 0.77970 1.20881 1.21668 1.20514 1.19072 0.80453 0.94716 1.43203 0.89017 1.42806 1.04026 1.01744 1.89957 1.20107 0.88468 0.89819 0.92587 0.91410 1.23820 0.93296 1.01137 1.00229 1.21726 0.97435 0.96738 0.97452 1.22279 0.94261 1.01279 0.97182 0.89563 1.21371 0.97323 1.00376 0.80844 1.49783 1.08384 1.63277 1.13051 1.16214 0.81321 0.78685 0.84230 1.90920 1.78020 1.49625 1.20200 1.22147 0.94555 1.04033 0.83836 1.22498 0.87477 1.01946 1.01112 1.20644 0.92259 1.01494 0.92074 1.67042 0.99011 1.13875 1.34979 1.22873 0.98647 0.95890 0.89065 1.22089 0.95847 0.99810 0.98664 1.20525 0.89842 0.99758 0.98433 1.20627 0.83011 1.02367 0.97675 1.84138 1.18834 1.71270 1.32970 1.21544 0.76919 0.99981 1.00466 1.22570 0.99002 0.98340 0.94547 0.89903 0.93011 0.80633 0.90377 0.92246 0.91756 0.91841 0.90789 0.90594 0.80392 0.81536 0.83051 0.83427 0.89411 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.97 55.49 0.78 -27.89 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.72 27.73 -169.99 -4.71 17.01 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.54 10.44 -15.06 -0.16 -6.70 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.74 -16.18 4.61 -53.20 -0.25 -16.43 16 10 C 0.20 3.45 3.46 -67.70 -0.23 3.21 16 11 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 12 C -0.14 -2.14 6.73 -23.33 -0.16 -2.30 16 13 C -0.10 -1.11 6.71 -25.91 -0.17 -1.29 16 14 C -0.13 -1.67 2.73 -90.27 -0.25 -1.92 16 15 H 0.09 1.28 7.64 -51.93 -0.40 0.88 16 16 C 0.12 1.42 5.43 -3.86 -0.02 1.40 16 17 N -0.61 -8.57 3.43 -172.92 -0.59 -9.16 16 18 C 0.61 9.05 7.86 -12.63 -0.10 8.95 16 19 O -0.51 -8.99 17.16 5.26 0.09 -8.90 16 20 C 0.01 0.08 6.92 -36.85 -0.25 -0.18 16 21 C -0.11 -1.33 10.81 -37.18 -0.40 -1.74 16 22 C 0.06 0.77 7.52 -83.18 -0.63 0.14 16 23 N -0.44 -4.83 10.41 -9.87 -0.10 -4.93 16 24 C 0.10 0.72 11.17 -17.49 -0.20 0.53 16 25 C -0.14 -0.79 10.09 -39.36 -0.40 -1.19 16 26 C -0.06 -0.42 10.19 -39.20 -0.40 -0.82 16 27 C 0.01 0.15 7.42 -38.27 -0.28 -0.14 16 28 O -0.17 -1.98 8.18 3.37 0.03 -1.95 16 29 C 0.13 2.01 6.53 -3.31 -0.02 1.99 16 30 C -0.12 -1.77 2.60 -90.34 -0.23 -2.01 16 31 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.36 7.84 4.05 -40.82 -0.17 7.68 16 34 H 0.08 1.35 7.98 -51.93 -0.41 0.93 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 39 H 0.08 0.84 7.38 -51.93 -0.38 0.45 16 40 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.17 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 43 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 45 H 0.08 1.40 6.96 -51.93 -0.36 1.04 16 LS Contribution 367.77 15.07 5.54 5.54 Total: -1.00 -33.12 367.77 -9.17 -42.29 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.95 Total: 6.35 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.00 Total: -1.94 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.17 Total: -58.40 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.12 Total: -10.85 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.12 -9.17 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.613 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds