Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21624 * 120.00207 * 179.97438 * 18 17 16 20 20 C 1.47177 * 119.99806 * 359.96517 * 18 17 16 21 21 C 1.35745 * 125.13006 * 179.97438 * 20 18 17 22 22 C 1.46421 * 106.13968 * 180.02562 * 21 20 18 23 23 N 1.32939 * 133.88644 * 180.02562 * 22 21 20 24 24 C 1.31438 * 121.38462 * 179.97438 * 23 22 21 25 25 C 1.38861 * 121.18173 * 0.02562 * 24 23 22 26 26 C 1.38211 * 119.71335 * 0.02562 * 25 24 23 27 27 C 1.39295 * 118.33418 * 359.97438 * 26 25 24 28 28 O 1.34587 * 133.42774 * 180.37608 * 27 26 25 29 29 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 30 30 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 31 31 H 1.09001 * 109.99421 * 198.25759 * 30 10 9 32 32 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 33 33 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 34 34 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 35 35 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 36 36 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 37 37 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 38 38 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 39 39 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 40 40 H 1.07998 * 126.93311 * 359.97438 * 21 20 18 41 41 H 1.08001 * 119.40755 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.14307 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.83350 * 179.97438 * 26 25 24 44 44 H 1.09000 * 110.84547 * 216.66722 * 29 17 16 45 45 H 1.08998 * 111.01935 * 93.13449 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 1 3.5534 -3.2306 -0.5578 12 6 4.3969 -2.9434 1.4479 13 6 5.9428 -2.8106 1.6439 14 6 6.2867 -1.7445 0.6313 15 1 5.8780 -0.7864 0.9525 16 6 7.6350 -1.5433 -0.0027 17 7 7.3403 -1.1104 -1.3999 18 6 8.2432 -0.6864 -2.3063 19 8 7.8795 -0.3587 -3.4196 20 6 9.6693 -0.6196 -1.9486 21 6 10.6639 -0.2104 -2.7768 22 6 11.9035 -0.3086 -2.0036 23 7 13.1798 -0.0508 -2.2718 24 6 14.1187 -0.2313 -1.3699 25 6 13.8141 -0.7000 -0.0988 26 6 12.5022 -0.9842 0.2304 27 6 11.5201 -0.7871 -0.7376 28 8 10.1846 -0.9530 -0.7477 29 6 5.8640 -1.2311 -1.6168 30 6 5.4776 -2.2877 -0.6110 31 1 5.8864 -3.2532 -0.9092 32 1 -0.4850 0.8402 -0.0004 33 1 3.8646 -0.3622 -0.0056 34 1 3.8714 -2.3060 2.1590 35 1 4.0896 -3.9816 1.5738 36 1 6.4481 -3.7479 1.4112 37 1 6.1821 -2.4808 2.6548 38 1 8.1960 -2.4780 -0.0057 39 1 8.1922 -0.7691 0.5247 40 1 10.5618 0.1201 -3.7998 41 1 15.1456 -0.0111 -1.6220 42 1 14.5991 -0.8426 0.6292 43 1 12.2450 -1.3500 1.2135 44 1 5.6470 -1.5640 -2.6318 45 1 5.3591 -0.2891 -1.4031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026316518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = 29.436763 kcal Electronic energy + Delta-G solvation = -29370.695849 eV Core-core repulsion = 25355.059978 eV Total energy + Delta-G solvation = -4015.635871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.85991 -41.85633 -40.23372 -39.70678 -36.92815 -35.15635 -34.32358 -33.03012 -32.65205 -31.81962 -30.54408 -30.14544 -27.31673 -26.09501 -24.86933 -24.60491 -24.01525 -22.72203 -21.37614 -21.14260 -20.59799 -19.84133 -19.08382 -18.73889 -17.90047 -17.61543 -17.31410 -16.93354 -16.67340 -16.34638 -15.97257 -15.67187 -15.48803 -15.08496 -14.83016 -14.63911 -14.45721 -14.40266 -14.12348 -14.08564 -13.86862 -13.59825 -13.53737 -13.36827 -13.02452 -12.74693 -12.41857 -12.24446 -12.02098 -11.96691 -11.70337 -11.66971 -11.50690 -11.46175 -11.03438 -10.94393 -10.55552 -10.21481 -10.07890 -9.72811 -9.29105 -8.02123 -5.33544 -0.72233 0.04593 0.57987 1.04482 1.32702 1.36567 1.42074 1.58786 1.80912 2.45823 2.65548 2.68573 2.92399 3.27670 3.30132 3.46213 3.56607 3.70394 3.74198 3.84997 3.92510 4.10703 4.15093 4.21955 4.24208 4.35051 4.39823 4.48737 4.49762 4.58489 4.66153 4.69844 4.77466 4.84920 4.87395 4.91970 4.95415 5.02406 5.09952 5.19591 5.28535 5.31860 5.41483 5.60973 5.71068 5.81776 6.10910 6.23110 6.62280 6.77277 7.08842 7.86076 8.02695 9.19648 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.002709 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.426429 B =10334.420938 C =10946.713357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.941 3.059 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.254 1.254 7 C -0.218 4.218 8 H 0.063 0.937 9 N -0.746 5.746 10 C 0.189 3.811 11 H 0.056 0.944 12 C -0.139 4.139 13 C -0.080 4.080 14 C -0.117 4.117 15 H 0.064 0.936 16 C 0.128 3.872 17 N -0.610 5.610 18 C 0.609 3.391 19 O -0.551 6.551 20 C -0.008 4.008 21 C -0.112 4.112 22 C 0.033 3.967 23 N -0.476 5.476 24 C 0.100 3.900 25 C -0.121 4.121 26 C -0.060 4.060 27 C 0.001 3.999 28 O -0.169 6.169 29 C 0.129 3.871 30 C -0.122 4.122 31 H 0.108 0.892 32 H 0.256 0.744 33 H 0.362 0.638 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.175 0.825 41 H 0.201 0.799 42 H 0.199 0.801 43 H 0.180 0.820 44 H 0.077 0.923 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.383 -5.935 5.139 34.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.253 4.253 3 Si 0.769 3.231 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.349 4.349 8 H 0.081 0.919 9 N -0.389 5.389 10 C 0.080 3.920 11 H 0.074 0.926 12 C -0.180 4.180 13 C -0.118 4.118 14 C -0.137 4.137 15 H 0.082 0.918 16 C 0.007 3.993 17 N -0.343 5.343 18 C 0.397 3.603 19 O -0.431 6.431 20 C -0.060 4.060 21 C -0.134 4.134 22 C -0.095 4.095 23 N -0.186 5.186 24 C -0.066 4.066 25 C -0.141 4.141 26 C -0.086 4.086 27 C -0.049 4.049 28 O -0.070 6.070 29 C 0.008 3.992 30 C -0.142 4.142 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.192 0.808 41 H 0.217 0.783 42 H 0.216 0.784 43 H 0.197 0.803 44 H 0.096 0.904 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 32.997 -5.618 3.876 33.696 hybrid contribution -0.800 1.250 0.199 1.497 sum 32.197 -4.368 4.074 32.747 Atomic orbital electron populations 1.69862 1.06914 1.26329 1.60317 1.25361 0.95920 1.00616 1.03411 0.85624 0.78775 0.80895 0.77770 1.21227 1.22341 1.17895 1.19058 0.82602 0.93340 1.39935 0.91883 1.42808 1.02336 1.03762 1.89983 1.20397 0.89411 0.87510 0.94670 0.92580 1.23638 0.96057 1.01209 0.97048 1.21672 0.94423 0.97665 0.98000 1.22234 0.94369 1.00563 0.96489 0.91759 1.21485 0.96785 1.01867 0.79124 1.49797 1.07488 1.62943 1.14027 1.16424 0.82190 0.77931 0.83765 1.90884 1.78991 1.51414 1.21837 1.21564 0.93375 1.06148 0.84911 1.22633 0.88441 1.01173 1.01126 1.20649 0.92546 1.03532 0.92803 1.67037 0.99194 1.15456 1.36938 1.23635 0.99328 0.94295 0.89333 1.22657 0.96252 0.96600 0.98554 1.21084 0.89522 0.99059 0.98976 1.21092 0.82801 1.02812 0.98232 1.84070 1.19563 1.71404 1.31943 1.21397 0.78101 0.99288 1.00373 1.22405 0.97366 0.99257 0.95176 0.87426 0.93536 0.80446 0.93036 0.90757 0.88764 0.90122 0.88345 0.89496 0.80773 0.78276 0.78367 0.80309 0.90419 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.90 13.97 21.65 0.30 -62.60 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 3 Si 0.94 46.02 27.73 68.60 1.90 47.92 16 4 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.25 -11.21 6.52 99.48 0.65 -10.56 16 7 C -0.22 -12.01 10.44 84.03 0.88 -11.13 16 8 H 0.06 3.78 8.06 -2.91 -0.02 3.76 16 9 N -0.75 -32.78 4.61 -322.23 -1.49 -34.27 16 10 C 0.19 6.37 3.46 45.14 0.16 6.53 16 11 H 0.06 2.01 8.09 -2.39 -0.02 1.99 16 12 C -0.14 -3.88 6.73 32.80 0.22 -3.66 16 13 C -0.08 -1.54 6.71 31.13 0.21 -1.34 16 14 C -0.12 -2.68 2.73 -10.56 -0.03 -2.71 16 15 H 0.06 1.78 7.64 -2.39 -0.02 1.76 16 16 C 0.13 2.59 5.43 85.00 0.46 3.05 16 17 N -0.61 -16.61 3.43 -819.24 -2.81 -19.41 16 18 C 0.61 18.30 7.86 86.59 0.68 18.98 16 19 O -0.55 -20.28 17.16 -4.11 -0.07 -20.35 16 20 C -0.01 -0.21 6.92 24.04 0.17 -0.04 16 21 C -0.11 -2.82 10.81 23.82 0.26 -2.56 16 22 C 0.03 0.74 7.52 41.70 0.31 1.06 16 23 N -0.48 -9.71 10.41 -185.13 -1.93 -11.64 16 24 C 0.10 1.06 11.17 84.90 0.95 2.01 16 25 C -0.12 -0.70 10.09 22.41 0.23 -0.47 16 26 C -0.06 -0.59 10.19 22.52 0.23 -0.37 16 27 C 0.00 0.02 7.42 23.12 0.17 0.19 16 28 O -0.17 -3.59 8.18 -10.86 -0.09 -3.68 16 29 C 0.13 3.98 6.53 85.07 0.56 4.54 16 30 C -0.12 -3.30 2.60 -10.61 -0.03 -3.33 16 31 H 0.11 2.45 8.13 -2.39 -0.02 2.43 16 32 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 33 H 0.36 15.72 4.05 -92.71 -0.38 15.35 16 34 H 0.05 1.73 7.98 -2.39 -0.02 1.71 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.10 1.60 8.09 -2.38 -0.02 1.58 16 39 H 0.09 1.64 7.38 -2.39 -0.02 1.62 16 40 H 0.17 4.23 8.06 -2.91 -0.02 4.20 16 41 H 0.20 0.60 8.06 -2.91 -0.02 0.57 16 42 H 0.20 -0.70 8.06 -2.91 -0.02 -0.73 16 43 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.08 2.51 8.09 -2.39 -0.02 2.49 16 45 H 0.06 2.09 6.96 -2.39 -0.02 2.07 16 Total: -1.00 -77.76 367.77 2.30 -75.45 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.59 Total: 20.97 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.88 Total: 7.61 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -5.92 Total: -127.92 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.16 Total: -24.03 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.90 Total: 47.92 kcal Total: -77.76 2.30 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.889 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds