Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47532 * 269.00288 * 3 2 1 5 5 H 1.48496 * 109.47286 * 29.01003 * 3 2 1 6 6 H 1.48504 * 109.46889 * 149.00824 * 3 2 1 7 7 C 1.38813 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00041 * 340.01398 * 7 2 1 9 9 N 1.36936 * 120.00007 * 160.01017 * 7 2 1 10 10 C 1.47420 * 125.64657 * 337.38712 * 9 7 2 11 11 C 1.54913 * 104.82878 * 204.08614 * 10 9 7 12 12 C 1.55157 * 101.58281 * 322.99234 * 11 10 9 13 13 C 1.47021 * 125.64406 * 157.33842 * 9 7 2 14 14 H 1.08996 * 109.88589 * 59.40886 * 13 9 7 15 15 C 1.52999 * 109.88385 * 298.39379 * 13 9 7 16 16 N 1.46498 * 109.47014 * 60.87250 * 15 13 9 17 17 C 1.34774 * 120.00470 * 186.13657 * 16 15 13 18 18 O 1.21730 * 119.99695 * 0.02562 * 17 16 15 19 19 C 1.46396 * 120.00461 * 180.02562 * 17 16 15 20 20 O 1.35380 * 126.81913 * 5.18572 * 19 17 16 21 21 C 1.33656 * 107.95484 * 179.97438 * 20 19 17 22 22 N 1.30362 * 109.72938 * 359.74930 * 21 20 19 23 23 C 1.34543 * 109.01334 * 0.41060 * 22 21 20 24 24 C 1.48131 * 126.53045 * 179.86227 * 23 22 21 25 25 C 1.39470 * 120.13758 * 45.81412 * 24 23 22 26 26 C 1.37978 * 119.86867 * 180.02562 * 25 24 23 27 27 C 1.38343 * 120.13249 * 0.02562 * 26 25 24 28 28 C 1.38346 * 120.27244 * 0.23889 * 27 26 25 29 29 C 1.37984 * 120.13072 * 359.48913 * 28 27 26 30 30 H 0.97004 * 119.99882 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.36798 * 322.92287 * 10 9 7 32 32 H 1.08998 * 110.37192 * 85.14235 * 10 9 7 33 33 H 1.09003 * 111.00167 * 81.06599 * 11 10 9 34 34 H 1.08998 * 111.00471 * 204.91835 * 11 10 9 35 35 H 1.09000 * 110.72085 * 277.13618 * 12 11 10 36 36 H 1.09000 * 110.71931 * 153.86290 * 12 11 10 37 37 H 1.08995 * 109.47264 * 300.87131 * 15 13 9 38 38 H 1.09003 * 109.47260 * 180.86878 * 15 13 9 39 39 H 0.97007 * 120.00014 * 6.13668 * 16 15 13 40 40 H 1.08000 * 125.13254 * 180.02562 * 21 20 19 41 41 H 1.08004 * 120.06278 * 359.97438 * 25 24 23 42 42 H 1.08000 * 119.93333 * 180.02562 * 26 25 24 43 43 H 1.08002 * 119.86694 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.93891 * 179.71795 * 28 27 26 45 45 H 1.08002 * 120.07029 * 180.25644 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5188 2.0343 -1.3998 5 1 1.4373 2.6586 0.6790 6 1 3.5371 1.4462 0.7209 7 6 2.0102 -1.2022 -0.0005 8 1 1.5190 -2.1095 0.3187 9 7 3.3177 -1.2378 -0.4060 10 6 3.9729 -0.2493 -1.2818 11 6 5.1588 -1.0123 -1.9231 12 6 5.6249 -1.9095 -0.7462 13 6 4.3008 -2.2676 -0.0390 14 1 3.9537 -3.2462 -0.3703 15 6 4.5060 -2.2744 1.4771 16 7 3.2369 -2.5840 2.1403 17 6 3.1461 -2.5236 3.4836 18 8 4.1186 -2.2112 4.1459 19 6 1.8781 -2.8335 4.1463 20 8 0.7457 -3.2874 3.5595 21 6 -0.1783 -3.4433 4.5126 22 7 0.3232 -3.1136 5.6698 23 6 1.5987 -2.7212 5.4990 24 6 2.5293 -2.2625 6.5564 25 6 2.6349 -2.9723 7.7523 26 6 3.5031 -2.5398 8.7337 27 6 4.2675 -1.4043 8.5334 28 6 4.1632 -0.6929 7.3515 29 6 3.3027 -1.1186 6.3604 30 1 -0.4850 0.8401 0.0004 31 1 3.2812 0.0928 -2.0516 32 1 4.3355 0.5953 -0.6960 33 1 4.8243 -1.6166 -2.7664 34 1 5.9480 -0.3242 -2.2261 35 1 6.2826 -1.3559 -0.0761 36 1 6.1186 -2.8074 -1.1179 37 1 4.8554 -1.2940 1.8009 38 1 5.2470 -3.0293 1.7401 39 1 2.4619 -2.8326 1.6125 40 1 -1.1866 -3.7940 4.3493 41 1 2.0377 -3.8582 7.9102 42 1 3.5860 -3.0889 9.6600 43 1 4.9454 -1.0694 9.3047 44 1 4.7593 0.1955 7.2027 45 1 3.2252 -0.5647 5.4365 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027924521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 47.062320 kcal Electronic energy + Delta-G solvation = -30000.433083 eV Core-core repulsion = 25985.561514 eV Total energy + Delta-G solvation = -4014.871569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.14826 -39.32177 -38.81264 -37.90106 -35.04064 -34.00540 -32.74094 -31.77728 -30.78151 -30.07518 -29.98202 -28.74133 -25.40542 -24.34627 -23.38295 -23.22051 -22.17514 -21.29905 -20.86459 -20.05996 -19.65133 -18.15747 -17.24973 -16.66265 -16.63075 -16.13376 -15.84423 -15.48410 -15.19133 -14.97701 -14.73158 -14.41525 -13.91932 -13.62993 -13.47255 -13.28992 -13.20557 -13.07279 -12.74369 -12.65515 -12.58994 -11.77187 -11.40796 -11.36920 -11.25784 -11.23543 -11.03562 -10.96560 -10.81998 -10.68536 -10.59350 -10.12775 -10.01250 -9.90365 -9.50259 -9.23925 -8.84282 -8.76019 -8.52696 -8.19746 -7.15357 -6.07933 -3.42039 0.77731 1.51819 1.59233 2.60780 2.67249 3.26883 3.38890 3.42200 3.43352 3.66207 3.90227 4.10456 4.43994 4.74909 4.81362 4.98993 5.08130 5.11249 5.15684 5.17175 5.23965 5.31164 5.47865 5.52312 5.58642 5.69364 5.74549 5.76375 5.82515 5.96124 6.00079 6.03491 6.17138 6.17415 6.20431 6.21853 6.30987 6.56850 6.57147 6.63660 6.69899 6.70633 6.73910 6.86732 7.08375 7.55187 7.61437 7.96502 8.15792 8.48435 8.67229 9.54896 10.05859 11.07064 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012321 B = 0.003808 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.993365 B = 7352.003647 C = 7912.266889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.031 3.969 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.088 0.912 9 N -0.602 5.602 10 C 0.108 3.892 11 C -0.130 4.130 12 C -0.122 4.122 13 C 0.145 3.855 14 H 0.051 0.949 15 C 0.113 3.887 16 N -0.684 5.684 17 C 0.597 3.403 18 O -0.526 6.526 19 C -0.079 4.079 20 O -0.175 6.175 21 C 0.199 3.801 22 N -0.486 5.486 23 C 0.098 3.902 24 C -0.017 4.017 25 C -0.087 4.087 26 C -0.134 4.134 27 C -0.111 4.111 28 C -0.125 4.125 29 C -0.052 4.052 30 H 0.264 0.736 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.415 0.585 40 H 0.255 0.745 41 H 0.122 0.878 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 -6.594 8.641 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.169 4.169 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.106 0.894 9 N -0.328 5.328 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.161 4.161 13 C 0.037 3.963 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.336 5.336 17 C 0.381 3.619 18 O -0.406 6.406 19 C -0.135 4.135 20 O -0.059 6.059 21 C -0.027 4.027 22 N -0.214 5.214 23 C -0.026 4.026 24 C -0.018 4.018 25 C -0.106 4.106 26 C -0.152 4.152 27 C -0.129 4.129 28 C -0.144 4.144 29 C -0.071 4.071 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.255 0.745 40 H 0.271 0.729 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.768 -6.336 9.560 13.317 hybrid contribution 0.007 0.971 -0.909 1.330 sum 6.774 -5.366 8.650 12.227 Atomic orbital electron populations 1.69803 1.05542 1.26741 1.52431 1.25042 0.95123 0.97482 0.99259 0.86955 0.79403 0.84583 0.77658 1.21295 1.23099 1.19789 1.18378 0.83076 0.94461 1.41302 0.89427 1.44867 1.07423 1.26473 1.54008 1.21996 0.93638 0.92748 0.93328 1.22715 0.98055 0.98631 0.97477 1.22512 0.96360 0.99727 0.97486 1.21333 0.89988 0.94235 0.90703 0.93174 1.22054 0.84413 1.00459 0.94322 1.46070 1.15664 1.66524 1.05327 1.16272 0.84028 0.78740 0.82820 1.90871 1.35207 1.49735 1.64759 1.23604 0.88052 1.09172 0.92721 1.84576 1.19608 1.62614 1.39132 1.28173 0.96251 0.98016 0.80263 1.70443 1.07888 1.16709 1.26399 1.20479 0.90977 1.00230 0.90873 1.17600 0.95956 0.96209 0.91997 1.21095 0.97945 0.99259 0.92261 1.20960 0.97600 0.97519 0.99080 1.21193 0.98987 0.95407 0.97358 1.21011 0.99208 1.00441 0.93690 1.21175 0.93323 0.94401 0.98197 0.92615 0.92433 0.95469 0.91220 0.91655 0.91289 0.91211 0.91422 0.92401 0.74457 0.72927 0.85975 0.86039 0.86233 0.85895 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.97 55.49 0.78 -25.53 16 2 C 0.03 0.85 5.45 -17.43 -0.09 0.75 16 3 Si 0.88 22.12 24.36 -169.99 -4.14 17.98 16 4 H -0.29 -6.94 6.85 56.52 0.39 -6.55 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.79 6.37 56.52 0.36 -6.43 16 7 C -0.25 -6.25 8.88 -15.06 -0.13 -6.38 16 8 H 0.09 2.32 6.45 -52.49 -0.34 1.98 16 9 N -0.60 -13.15 2.89 -162.58 -0.47 -13.62 16 10 C 0.11 2.19 4.75 -2.53 -0.01 2.17 16 11 C -0.13 -1.99 7.09 -24.58 -0.17 -2.17 16 12 C -0.12 -1.75 6.48 -24.90 -0.16 -1.91 16 13 C 0.14 2.54 3.35 -66.95 -0.22 2.32 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 15 C 0.11 2.00 5.19 -4.04 -0.02 1.98 16 16 N -0.68 -13.02 4.80 -61.71 -0.30 -13.31 16 17 C 0.60 11.63 7.60 -12.98 -0.10 11.53 16 18 O -0.53 -10.75 13.34 5.16 0.07 -10.68 16 19 C -0.08 -1.46 7.22 -36.17 -0.26 -1.72 16 20 O -0.17 -2.96 10.57 4.34 0.05 -2.92 16 21 C 0.20 2.74 13.16 52.14 0.69 3.42 16 22 N -0.49 -7.83 11.28 -11.02 -0.12 -7.96 16 23 C 0.10 1.73 6.63 -82.49 -0.55 1.18 16 24 C -0.02 -0.28 5.39 -104.92 -0.57 -0.85 16 25 C -0.09 -1.25 9.78 -39.22 -0.38 -1.63 16 26 C -0.13 -1.63 10.03 -39.64 -0.40 -2.03 16 27 C -0.11 -1.35 10.04 -39.50 -0.40 -1.75 16 28 C -0.13 -1.75 10.03 -39.63 -0.40 -2.15 16 29 C -0.05 -0.87 7.60 -39.21 -0.30 -1.17 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.06 1.25 7.07 -51.93 -0.37 0.89 16 32 H 0.03 0.59 5.25 -51.93 -0.27 0.32 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.42 8.20 5.62 -40.82 -0.23 7.97 16 40 H 0.26 2.04 8.06 -52.49 -0.42 1.61 16 41 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 45 H 0.12 2.28 7.06 -52.49 -0.37 1.91 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -32.22 366.93 -7.92 -40.14 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.83 Total: 8.77 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -3.48 Total: 1.60 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: -0.12 Total: -60.43 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.11 Total: -13.60 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.22 -7.92 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027924521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.203 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds