Wall clock time and date at job start Sat Apr 11 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00555 * 2 1 4 4 H 1.48500 * 109.47148 * 270.00212 * 3 2 1 5 5 H 1.48503 * 109.46936 * 29.99470 * 3 2 1 6 6 H 1.48493 * 109.47517 * 149.99847 * 3 2 1 7 7 C 1.38812 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00219 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64859 * 344.16985 * 9 7 2 11 11 C 1.54908 * 104.93111 * 204.09723 * 10 9 7 12 12 C 1.55281 * 101.52773 * 323.12770 * 11 10 9 13 13 C 1.47026 * 125.64926 * 164.20073 * 9 7 2 14 14 H 1.08990 * 109.88326 * 59.49941 * 13 9 7 15 15 C 1.52999 * 109.87780 * 298.33087 * 13 9 7 16 16 N 1.46507 * 109.46996 * 176.45013 * 15 13 9 17 17 C 1.34770 * 120.00025 * 183.97453 * 16 15 13 18 18 O 1.21643 * 120.00492 * 359.97438 * 17 16 15 19 19 C 1.47102 * 120.00077 * 179.97438 * 17 16 15 20 20 C 1.42478 * 128.38022 * 5.64587 * 19 17 16 21 21 N 1.29877 * 106.40467 * 179.83616 * 20 19 17 22 22 O 1.20743 * 112.76112 * 0.46149 * 21 20 19 23 23 C 1.34227 * 111.95021 * 359.70044 * 22 21 20 24 24 C 1.47568 * 127.17490 * 179.97438 * 23 22 21 25 25 C 1.39695 * 120.15407 * 48.41027 * 24 23 22 26 26 C 1.37930 * 119.83968 * 179.74172 * 25 24 23 27 27 C 1.38382 * 120.15408 * 0.52882 * 26 25 24 28 28 C 1.38383 * 120.32014 * 359.72073 * 27 26 25 29 29 C 1.37925 * 120.15449 * 0.02562 * 28 27 26 30 30 H 0.97006 * 119.99405 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.36236 * 322.99295 * 10 9 7 32 32 H 1.09003 * 110.36412 * 85.20300 * 10 9 7 33 33 H 1.08999 * 111.00502 * 81.12018 * 11 10 9 34 34 H 1.08997 * 111.00497 * 204.96998 * 11 10 9 35 35 H 1.09003 * 110.61771 * 277.00908 * 12 11 10 36 36 H 1.08995 * 110.75811 * 153.77800 * 12 11 10 37 37 H 1.09002 * 109.47665 * 296.44638 * 15 13 9 38 38 H 1.09000 * 109.47386 * 56.45405 * 15 13 9 39 39 H 0.97001 * 119.99461 * 3.97278 * 16 15 13 40 40 H 1.07995 * 126.79419 * 359.97337 * 20 19 17 41 41 H 1.08004 * 120.08113 * 359.97191 * 25 24 23 42 42 H 1.07992 * 119.92436 * 180.25076 * 26 25 24 43 43 H 1.07999 * 119.84099 * 179.69951 * 27 26 25 44 44 H 1.07994 * 119.92242 * 180.02562 * 28 27 26 45 45 H 1.08002 * 120.08208 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1024 -2.5557 0.3268 11 6 -0.2365 -4.0290 0.7863 12 6 0.7616 -4.7429 -0.1652 13 6 1.8927 -3.7050 -0.3242 14 1 2.7076 -3.9369 0.3613 15 6 2.4043 -3.7099 -1.7661 16 7 3.0432 -4.9966 -2.0533 17 6 3.6415 -5.2012 -3.2434 18 8 3.6508 -4.3177 -4.0795 19 6 4.2835 -6.4930 -3.5316 20 6 4.2852 -7.6765 -2.7382 21 7 4.9751 -8.5583 -3.3963 22 8 5.4034 -8.1313 -4.4413 23 6 5.0442 -6.8543 -4.6465 24 6 5.3825 -6.0084 -5.8073 25 6 5.2030 -6.4932 -7.1051 26 6 5.5163 -5.6950 -8.1854 27 6 6.0177 -4.4207 -7.9860 28 6 6.2029 -3.9357 -6.7032 29 6 5.8890 -4.7209 -5.6136 30 1 -0.4849 0.8401 -0.0004 31 1 -0.3894 -1.8796 1.1321 32 1 -0.7168 -2.3761 -0.5555 33 1 0.0674 -4.1430 1.8268 34 1 -1.2522 -4.3945 0.6354 35 1 0.2925 -4.9524 -1.1266 36 1 1.1398 -5.6590 0.2883 37 1 1.5682 -3.5590 -2.4490 38 1 3.1298 -2.9069 -1.8970 39 1 3.0356 -5.7013 -1.3867 40 1 3.8057 -7.8137 -1.7803 41 1 4.8163 -7.4894 -7.2621 42 1 5.3743 -6.0670 -9.1892 43 1 6.2659 -3.8018 -8.8355 44 1 6.5942 -2.9401 -6.5550 45 1 6.0345 -4.3414 -4.6130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028236521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:34 Heat of formation + Delta-G solvation = 78.925802 kcal Electronic energy + Delta-G solvation = -28978.308162 eV Core-core repulsion = 24964.818297 eV Total energy + Delta-G solvation = -4013.489865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -45.16112 -39.57899 -39.08061 -37.63541 -34.46228 -34.09129 -33.23875 -32.50833 -31.14686 -30.10529 -29.59687 -28.70432 -25.59566 -24.63162 -23.90538 -23.45157 -22.58453 -21.53308 -20.58182 -20.13172 -19.55342 -18.53177 -17.89958 -17.40296 -16.67268 -16.35179 -15.90476 -15.23176 -15.06836 -14.89744 -14.79778 -14.54540 -14.24131 -13.88168 -13.63152 -13.51906 -13.30935 -13.03667 -13.01263 -12.16392 -11.94564 -11.91600 -11.81995 -11.54239 -11.39496 -11.34121 -10.96673 -10.83012 -10.75763 -10.27383 -10.16468 -10.08614 -9.99693 -9.90328 -9.83083 -9.73317 -9.11388 -8.83001 -8.70295 -8.60220 -6.87106 -5.81112 -3.18104 0.37688 1.23534 1.36647 1.62872 2.54948 3.26984 3.30827 3.38483 3.43807 3.44531 3.57096 3.99685 4.26775 4.44596 4.46604 4.70687 4.74333 4.89574 4.95787 5.11668 5.24097 5.28340 5.34853 5.35889 5.45656 5.52801 5.58493 5.66453 5.76037 5.82382 5.98849 6.08609 6.17703 6.18777 6.24463 6.31314 6.41193 6.49199 6.54503 6.63424 6.70556 6.74870 6.99878 7.46439 7.57446 7.65165 7.75204 7.87318 8.21260 8.33818 9.13356 9.73909 10.41375 11.31179 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.002991 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.912970 B = 9360.351376 C =11174.282037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.001 3.999 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.128 4.128 13 C 0.151 3.849 14 H 0.038 0.962 15 C 0.111 3.889 16 N -0.712 5.712 17 C 0.585 3.415 18 O -0.525 6.525 19 C -0.238 4.238 20 C 0.026 3.974 21 N -0.363 5.363 22 O 0.109 5.891 23 C 0.082 3.918 24 C -0.037 4.037 25 C -0.086 4.086 26 C -0.129 4.129 27 C -0.098 4.098 28 C -0.122 4.122 29 C -0.043 4.043 30 H 0.254 0.746 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.201 0.799 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.402 -15.308 -10.342 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.197 4.197 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.166 4.166 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.014 4.014 16 N -0.363 5.363 17 C 0.369 3.631 18 O -0.402 6.402 19 C -0.246 4.246 20 C -0.153 4.153 21 N -0.067 5.067 22 O 0.047 5.953 23 C 0.016 3.984 24 C -0.039 4.039 25 C -0.104 4.104 26 C -0.147 4.147 27 C -0.116 4.116 28 C -0.140 4.140 29 C -0.061 4.061 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.228 0.772 40 H 0.217 0.783 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.645 -15.665 -10.646 21.255 hybrid contribution -0.062 1.232 0.446 1.312 sum 9.584 -14.433 -10.200 20.104 Atomic orbital electron populations 1.69938 1.05056 1.25393 1.55568 1.24935 0.95663 0.97902 1.01177 0.86159 0.78754 0.83346 0.77748 1.21335 1.21622 1.20543 1.18967 0.90369 0.82132 1.44990 0.90684 1.44474 1.07086 1.01237 1.78400 1.21435 0.84931 0.90032 0.98825 1.23020 0.97623 0.99625 0.98433 1.22652 0.97225 0.96997 0.99742 1.21142 0.94636 0.88244 0.91685 0.94419 1.22314 0.97251 0.82743 0.99081 1.45963 1.56548 1.18110 1.15655 1.16775 0.78667 0.84838 0.82782 1.90859 1.59431 1.43790 1.46130 1.21679 1.08115 0.97878 0.96902 1.25071 0.99439 0.88889 1.01896 1.73538 1.14480 1.23144 0.95538 1.84886 1.56050 1.23653 1.30728 1.23111 0.95132 0.84784 0.95410 1.17484 1.04490 0.93114 0.88778 1.21213 0.98286 0.99872 0.91025 1.21019 1.00443 0.94561 0.98664 1.21362 0.97291 0.95647 0.97285 1.21093 1.00731 0.99997 0.92131 1.21134 0.93717 0.91313 0.99954 0.93554 0.91190 0.95457 0.92291 0.92280 0.91768 0.92388 0.91676 0.90859 0.77179 0.78261 0.85478 0.85429 0.85631 0.85195 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.20 10.62 55.49 0.59 -25.61 16 2 C 0.00 0.02 5.47 -17.43 -0.10 -0.07 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.34 9.73 -15.06 -0.15 -6.48 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.59 -14.19 3.13 -162.57 -0.51 -14.70 16 10 C 0.17 4.01 5.39 -2.53 -0.01 3.99 16 11 C -0.15 -2.62 7.10 -24.52 -0.17 -2.79 16 12 C -0.13 -2.02 6.03 -24.83 -0.15 -2.17 16 13 C 0.15 2.86 3.23 -66.95 -0.22 2.64 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C 0.11 2.04 5.08 -4.04 -0.02 2.02 16 16 N -0.71 -10.22 5.39 -61.48 -0.33 -10.55 16 17 C 0.58 9.00 7.77 -12.67 -0.10 8.90 16 18 O -0.52 -9.82 14.14 5.24 0.07 -9.75 16 19 C -0.24 -3.07 6.32 -104.11 -0.66 -3.73 16 20 C 0.03 0.28 11.69 -16.75 -0.20 0.09 16 21 N -0.36 -4.36 11.98 30.84 0.37 -3.99 16 22 O 0.11 1.31 11.17 16.73 0.19 1.50 16 23 C 0.08 1.02 6.97 -35.22 -0.25 0.77 16 24 C -0.04 -0.45 5.43 -105.00 -0.57 -1.02 16 25 C -0.09 -0.87 9.79 -39.15 -0.38 -1.25 16 26 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 27 C -0.10 -0.89 10.04 -39.48 -0.40 -1.29 16 28 C -0.12 -1.29 10.03 -39.64 -0.40 -1.69 16 29 C -0.04 -0.53 7.91 -39.15 -0.31 -0.84 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.07 1.82 7.02 -51.93 -0.36 1.45 16 32 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.00 7.79 -51.93 -0.40 0.60 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.34 8.06 -51.93 -0.42 0.92 16 38 H 0.07 1.55 7.89 -51.93 -0.41 1.14 16 39 H 0.39 4.40 7.48 -40.82 -0.31 4.09 16 40 H 0.20 1.42 7.77 -52.49 -0.41 1.01 16 41 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.13 1.69 7.52 -52.49 -0.39 1.30 16 LS Contribution 377.79 15.07 5.69 5.69 Total: -1.00 -31.93 377.79 -9.47 -41.40 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.05 Total: 3.75 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -4.47 Total: -4.47 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.12 Total: -54.85 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.26 Total: -8.25 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.93 -9.47 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028236521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.321 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds