Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99980 * 2 1 4 4 H 1.48497 * 109.46927 * 269.72894 * 3 2 1 5 5 H 1.48506 * 109.46836 * 29.72533 * 3 2 1 6 6 H 1.48490 * 109.47352 * 149.72429 * 3 2 1 7 7 C 1.38812 * 120.00058 * 179.72630 * 2 1 3 8 8 H 1.08005 * 119.99682 * 163.08295 * 7 2 1 9 9 N 1.36931 * 119.99878 * 343.08256 * 7 2 1 10 10 C 1.47149 * 120.98475 * 333.77989 * 9 7 2 11 11 C 1.53296 * 108.38694 * 230.50998 * 10 9 7 12 12 O 1.42963 * 109.22250 * 307.69880 * 11 10 9 13 13 C 1.42963 * 114.16656 * 62.57904 * 12 11 10 14 14 H 1.08998 * 109.51527 * 57.39264 * 13 12 11 15 15 C 1.52999 * 109.51402 * 177.49519 * 13 12 11 16 16 N 1.46494 * 109.47407 * 299.99925 * 15 13 12 17 17 C 1.34773 * 120.00525 * 179.97438 * 16 15 13 18 18 O 1.21561 * 119.99721 * 0.02562 * 17 16 15 19 19 C 1.47759 * 120.00291 * 179.97438 * 17 16 15 20 20 C 1.40605 * 120.26918 * 0.02562 * 19 17 16 21 21 N 1.30792 * 121.53979 * 180.02562 * 20 19 17 22 22 C 1.33821 * 121.72059 * 359.97438 * 21 20 19 23 23 C 1.40523 * 120.82008 * 180.02562 * 22 21 20 24 24 C 1.36136 * 119.81638 * 179.97438 * 23 22 21 25 25 C 1.39346 * 121.08950 * 359.97438 * 24 23 22 26 26 C 1.36144 * 120.82798 * 0.02562 * 25 24 23 27 27 C 1.40539 * 119.62221 * 359.97438 * 26 25 24 28 28 C 1.39013 * 120.27044 * 179.73220 * 19 17 16 29 29 C 1.47154 * 120.97887 * 153.49544 * 9 7 2 30 30 H 0.96999 * 120.00005 * 0.27659 * 1 2 3 31 31 H 1.08993 * 109.68413 * 350.23368 * 10 9 7 32 32 H 1.08997 * 109.68203 * 110.75310 * 10 9 7 33 33 H 1.09004 * 109.50741 * 67.61742 * 11 10 9 34 34 H 1.08993 * 109.51437 * 187.72356 * 11 10 9 35 35 H 1.09007 * 109.47061 * 59.99666 * 15 13 12 36 36 H 1.08997 * 109.47616 * 179.97438 * 15 13 12 37 37 H 0.97008 * 119.99727 * 359.97438 * 16 15 13 38 38 H 1.08002 * 119.22836 * 359.97438 * 20 19 17 39 39 H 1.07999 * 120.09431 * 359.97438 * 23 22 21 40 40 H 1.08004 * 119.45790 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.58742 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.18486 * 179.97438 * 26 25 24 43 43 H 1.07999 * 121.01469 * 359.97438 * 28 19 17 44 44 H 1.08999 * 109.68106 * 249.21167 * 29 9 7 45 45 H 1.09001 * 109.68075 * 9.76662 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5034 2.0431 -1.4000 5 1 1.4447 2.6544 0.6943 6 1 3.5448 1.4420 0.7058 7 6 2.0103 -1.2021 0.0057 8 1 3.0553 -1.2236 -0.2663 9 7 1.3701 -2.3607 0.3564 10 6 0.1975 -2.3390 1.2451 11 6 0.4244 -3.3557 2.3698 12 8 0.7649 -4.6213 1.7987 13 6 1.9813 -4.6161 1.0475 14 1 2.8005 -4.2804 1.6833 15 6 2.2745 -6.0294 0.5399 16 7 2.4090 -6.9396 1.6798 17 6 2.6697 -8.2455 1.4724 18 8 2.7937 -8.6680 0.3394 19 6 2.8059 -9.1634 2.6222 20 6 2.6642 -8.6807 3.9352 21 7 2.7803 -9.4709 4.9709 22 6 3.0389 -10.7767 4.8342 23 6 3.1593 -11.6087 5.9603 24 6 3.4223 -12.9344 5.7974 25 6 3.5750 -13.4870 4.5274 26 6 3.4655 -12.7137 3.4123 27 6 3.1946 -11.3408 3.5428 28 6 3.0693 -10.5125 2.4145 29 6 1.8307 -3.6635 -0.1495 30 1 -0.4850 0.8400 -0.0041 31 1 0.0770 -1.3425 1.6698 32 1 -0.6956 -2.6081 0.6811 33 1 1.2378 -3.0145 3.0102 34 1 -0.4866 -3.4550 2.9600 35 1 1.4557 -6.3637 -0.0973 36 1 3.2017 -6.0247 -0.0330 37 1 2.3104 -6.6024 2.5840 38 1 2.4553 -7.6328 4.0921 39 1 3.0436 -11.1974 6.9522 40 1 3.5140 -13.5684 6.6670 41 1 3.7836 -14.5418 4.4264 42 1 3.5862 -13.1527 2.4329 43 1 3.1778 -10.9111 1.4167 44 1 1.0993 -4.0642 -0.8513 45 1 2.7923 -3.5444 -0.6486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035521981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = 2.556373 kcal Electronic energy + Delta-G solvation = -28226.244184 eV Core-core repulsion = 24209.442693 eV Total energy + Delta-G solvation = -4016.801492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29196 -39.67788 -38.47675 -37.25818 -35.05579 -34.34419 -33.79056 -31.87762 -31.18753 -30.49733 -30.33598 -27.62260 -25.95668 -24.49683 -24.34434 -23.19464 -22.48356 -21.89950 -21.09804 -19.78071 -18.57067 -18.12858 -17.54704 -16.90147 -16.20024 -16.12485 -15.70769 -15.17067 -15.03918 -14.96813 -14.61963 -14.52760 -14.33264 -14.18144 -13.81904 -13.80610 -13.45125 -13.23904 -13.07648 -12.76727 -12.47967 -12.20158 -12.12404 -11.90416 -11.59004 -11.15732 -10.88738 -10.87988 -10.74824 -10.46000 -10.40949 -10.31405 -10.01319 -9.77449 -9.66962 -9.27704 -9.11857 -9.03966 -8.68542 -8.57433 -6.79106 -5.87819 -3.31508 -0.13819 0.23877 1.49214 2.23593 3.00069 3.04264 3.32038 3.39282 3.41198 3.74862 3.81457 4.16193 4.18377 4.33185 4.39603 4.41204 4.44220 4.62769 4.71285 4.83396 5.00467 5.09592 5.29676 5.35183 5.42102 5.44486 5.48358 5.52085 5.63343 5.74383 5.79711 5.88241 5.97347 5.99388 6.06495 6.11192 6.23678 6.33154 6.36585 6.41323 6.45030 6.71159 7.06403 7.40098 7.47828 7.48507 7.67364 7.80428 8.07695 8.29838 9.07785 9.70518 10.27209 11.20270 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.029025 B = 0.001913 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.448538 B =14630.214736 C =15048.012927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.063 3.937 14 H 0.060 0.940 15 C 0.130 3.870 16 N -0.711 5.711 17 C 0.561 3.439 18 O -0.539 6.539 19 C -0.189 4.189 20 C 0.164 3.836 21 N -0.475 5.475 22 C 0.141 3.859 23 C -0.098 4.098 24 C -0.092 4.092 25 C -0.121 4.121 26 C -0.085 4.085 27 C -0.114 4.114 28 C 0.012 3.988 29 C 0.122 3.878 30 H 0.255 0.745 31 H 0.094 0.906 32 H 0.028 0.972 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.403 0.597 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.031 0.969 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 -24.500 11.060 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.003 3.997 14 H 0.078 0.922 15 C 0.007 3.993 16 N -0.362 5.362 17 C 0.347 3.653 18 O -0.418 6.418 19 C -0.195 4.195 20 C -0.010 4.010 21 N -0.182 5.182 22 C 0.020 3.980 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.139 4.139 26 C -0.104 4.104 27 C -0.116 4.116 28 C -0.015 4.015 29 C -0.005 4.005 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.239 0.761 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.048 0.952 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.076 -24.511 11.155 27.607 hybrid contribution 0.463 1.113 -0.477 1.297 sum 6.539 -23.398 10.678 26.538 Atomic orbital electron populations 1.70031 1.05289 1.25714 1.53615 1.25060 0.95351 0.98533 1.00705 0.86259 0.79098 0.83366 0.77819 1.21282 1.21468 1.20434 1.19181 0.92628 0.84552 1.42186 0.91338 1.44079 1.33655 1.00962 1.53026 1.21447 0.89115 0.98402 0.89716 1.23329 0.99081 0.84730 0.96647 1.87775 1.41189 1.32540 1.69450 1.22914 0.87599 0.93687 0.95459 0.92176 1.21502 1.02348 0.87336 0.88139 1.45846 1.71373 1.07816 1.11151 1.17935 0.77104 0.82091 0.88150 1.90784 1.50960 1.76635 1.23388 1.21007 1.07910 0.95403 0.95151 1.23114 0.91247 0.99816 0.86801 1.67973 1.13075 1.03684 1.33501 1.19045 0.96313 0.90412 0.92244 1.20856 0.99859 0.92949 0.97985 1.21007 0.97447 0.94966 0.97818 1.20964 1.00203 1.00442 0.92335 1.21090 0.97818 0.91759 0.99731 1.18846 1.03703 0.95321 0.93688 1.21982 0.88758 0.91566 0.99201 1.21525 0.98999 0.87238 0.92785 0.93466 0.88751 0.95355 0.94024 0.89976 0.90394 0.89852 0.76084 0.81918 0.84417 0.85053 0.85223 0.84801 0.82836 0.95153 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.14 55.49 0.62 -25.03 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.17 29.59 -169.99 -5.03 16.14 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.84 9.65 -15.06 -0.15 -6.99 16 8 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 9 N -0.59 -14.51 3.04 -171.57 -0.52 -15.03 16 10 C 0.14 3.23 5.44 -3.53 -0.02 3.21 16 11 C 0.04 0.74 6.99 37.31 0.26 1.00 16 12 O -0.39 -6.96 10.13 -35.23 -0.36 -7.32 16 13 C 0.06 1.05 2.88 -26.36 -0.08 0.98 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.87 5.37 -4.05 -0.02 1.85 16 16 N -0.71 -9.01 5.40 -61.28 -0.33 -9.34 16 17 C 0.56 7.54 7.77 -12.37 -0.10 7.44 16 18 O -0.54 -8.86 16.38 5.31 0.09 -8.77 16 19 C -0.19 -2.16 5.89 -104.83 -0.62 -2.78 16 20 C 0.16 1.75 10.68 -17.10 -0.18 1.56 16 21 N -0.48 -5.48 10.30 -10.67 -0.11 -5.59 16 22 C 0.14 1.50 6.61 -84.79 -0.56 0.94 16 23 C -0.10 -0.81 9.97 -39.48 -0.39 -1.20 16 24 C -0.09 -0.57 9.94 -39.92 -0.40 -0.97 16 25 C -0.12 -0.72 9.96 -39.92 -0.40 -1.12 16 26 C -0.09 -0.62 9.77 -39.47 -0.39 -1.00 16 27 C -0.11 -1.11 5.74 -106.81 -0.61 -1.72 16 28 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 29 C 0.12 2.46 6.05 -3.31 -0.02 2.44 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 32 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.40 4.40 6.37 -40.82 -0.26 4.14 16 38 H 0.16 1.37 6.37 -52.49 -0.33 1.04 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 0.46 8.06 -52.48 -0.42 0.03 16 41 H 0.13 0.44 8.06 -52.49 -0.42 0.01 16 42 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.15 1.44 7.70 -52.49 -0.40 1.03 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -32.77 374.39 -10.05 -42.82 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.93 Total: 3.12 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -4.11 Total: 3.37 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.34 Total: -55.00 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.27 Total: -16.10 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.77 -10.05 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035521981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.379 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds