Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47254 * 274.15061 * 3 2 1 5 5 H 1.48502 * 109.47049 * 34.15209 * 3 2 1 6 6 H 1.48497 * 109.47167 * 154.15041 * 3 2 1 7 7 C 1.38812 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99136 * 197.02743 * 7 2 1 9 9 N 1.36934 * 120.00253 * 17.02514 * 7 2 1 10 10 C 1.47144 * 120.98509 * 26.60789 * 9 7 2 11 11 C 1.53295 * 108.38691 * 129.44010 * 10 9 7 12 12 O 1.42956 * 109.26104 * 52.27859 * 11 10 9 13 13 C 1.42962 * 114.17456 * 297.50207 * 12 11 10 14 14 H 1.09000 * 109.51420 * 302.55414 * 13 12 11 15 15 C 1.52994 * 109.51487 * 182.44621 * 13 12 11 16 16 N 1.46494 * 109.47297 * 65.10472 * 15 13 12 17 17 C 1.34777 * 120.00185 * 180.02562 * 16 15 13 18 18 O 1.21564 * 119.99912 * 359.71794 * 17 16 15 19 19 C 1.47757 * 119.99881 * 179.97438 * 17 16 15 20 20 C 1.40603 * 120.27135 * 359.72528 * 19 17 16 21 21 N 1.30795 * 121.53980 * 179.97438 * 20 19 17 22 22 C 1.33821 * 121.72120 * 359.97367 * 21 20 19 23 23 C 1.40529 * 120.82272 * 179.97438 * 22 21 20 24 24 C 1.36128 * 119.81608 * 180.08843 * 23 22 21 25 25 C 1.39341 * 121.09097 * 359.90982 * 24 23 22 26 26 C 1.36144 * 120.83175 * 0.07751 * 25 24 23 27 27 C 1.40539 * 119.61893 * 359.96656 * 26 25 24 28 28 C 1.39011 * 120.26790 * 179.44043 * 19 17 16 29 29 C 1.47158 * 120.97789 * 206.58500 * 9 7 2 30 30 H 0.96998 * 120.00264 * 359.97438 * 1 2 3 31 31 H 1.08991 * 109.68632 * 249.16850 * 10 9 7 32 32 H 1.09006 * 109.68021 * 9.68752 * 10 9 7 33 33 H 1.08993 * 109.51615 * 172.22861 * 11 10 9 34 34 H 1.09006 * 109.51228 * 292.38576 * 11 10 9 35 35 H 1.09005 * 109.47297 * 305.10329 * 15 13 12 36 36 H 1.09007 * 109.47369 * 185.10520 * 15 13 12 37 37 H 0.97002 * 119.99749 * 359.97438 * 16 15 13 38 38 H 1.07998 * 119.23041 * 359.96888 * 20 19 17 39 39 H 1.08001 * 120.08540 * 0.02562 * 23 22 21 40 40 H 1.08005 * 119.45454 * 179.97438 * 24 23 22 41 41 H 1.07995 * 119.58554 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.18614 * 179.97438 * 26 25 24 43 43 H 1.08005 * 121.02035 * 0.02562 * 28 19 17 44 44 H 1.09003 * 109.67427 * 110.83873 * 29 9 7 45 45 H 1.09001 * 109.71566 * 350.30433 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4099 2.0971 -1.3964 5 1 1.4942 2.6257 0.7860 6 1 3.5889 1.4165 0.6104 7 6 2.0103 -1.2022 -0.0005 8 1 3.0548 -1.2227 0.2734 9 7 1.3706 -2.3619 -0.3483 10 6 0.2047 -2.3442 -1.2457 11 6 0.4386 -3.3677 -2.3627 12 8 0.7740 -4.6304 -1.7826 13 6 1.9841 -4.6222 -1.0215 14 1 2.8089 -4.2909 -1.6524 15 6 2.2717 -6.0327 -0.5034 16 7 2.5351 -6.9245 -1.6353 17 6 2.8142 -8.2250 -1.4180 18 8 2.8525 -8.6569 -0.2823 19 6 3.0793 -9.1246 -2.5598 20 6 3.0362 -8.6312 -3.8757 21 7 3.2672 -9.4051 -4.9045 22 6 3.5563 -10.7034 -4.7575 23 6 3.8008 -11.5178 -5.8763 24 6 4.0914 -12.8364 -5.7031 25 6 4.1535 -13.3983 -4.4295 26 6 3.9231 -12.6419 -3.3211 27 6 3.6194 -11.2770 -3.4625 28 6 3.3792 -10.4643 -2.3415 29 6 1.8294 -3.6629 0.1642 30 1 -0.4850 0.8400 0.0004 31 1 -0.6928 -2.6093 -0.6869 32 1 0.0883 -1.3498 -1.6768 33 1 -0.4683 -3.4701 -2.9585 34 1 1.2572 -3.0313 -2.9991 35 1 1.4090 -6.3980 0.0539 36 1 3.1433 -6.0089 0.1509 37 1 2.5078 -6.5791 -2.5414 38 1 2.8068 -7.5888 -4.0409 39 1 3.7572 -11.0989 -6.8708 40 1 4.2778 -13.4571 -6.5670 41 1 4.3865 -14.4471 -4.3202 42 1 3.9736 -13.0883 -2.3390 43 1 3.4231 -10.8689 -1.3410 44 1 1.0953 -4.0608 0.8649 45 1 2.7890 -3.5425 0.6668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035521982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = 2.252596 kcal Electronic energy + Delta-G solvation = -28210.517383 eV Core-core repulsion = 24193.702718 eV Total energy + Delta-G solvation = -4016.814665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29723 -39.68511 -38.49033 -37.26371 -35.06322 -34.35325 -33.79557 -31.88947 -31.19080 -30.50464 -30.34753 -27.61902 -25.96744 -24.50128 -24.34749 -23.20147 -22.48801 -21.90868 -21.12264 -19.77588 -18.57194 -18.13245 -17.55254 -16.90036 -16.21055 -16.12147 -15.72197 -15.18485 -15.04258 -14.97398 -14.62544 -14.51861 -14.33740 -14.19107 -13.82057 -13.81002 -13.45197 -13.23927 -13.06670 -12.77956 -12.48924 -12.20576 -12.12903 -11.90844 -11.59954 -11.15852 -10.89768 -10.88719 -10.76807 -10.47060 -10.40296 -10.27730 -10.02072 -9.77461 -9.67548 -9.28333 -9.11509 -9.05287 -8.69028 -8.57928 -6.79411 -5.87871 -3.31991 -0.14283 0.23345 1.48767 2.23059 2.99771 3.03261 3.32195 3.39523 3.40950 3.74341 3.80884 4.16014 4.18199 4.32516 4.39270 4.40606 4.43472 4.62012 4.70846 4.82778 4.99919 5.08595 5.29361 5.34766 5.42546 5.44304 5.47911 5.51755 5.62816 5.74844 5.79438 5.87783 5.96899 5.98771 6.05991 6.10717 6.22858 6.32932 6.36155 6.41065 6.44669 6.71116 7.05902 7.38731 7.47174 7.47923 7.67701 7.80593 8.06655 8.29752 9.07656 9.70234 10.27047 11.20271 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.028139 B = 0.001911 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.822722 B =14646.606955 C =15015.678881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.593 5.593 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.130 3.870 16 N -0.712 5.712 17 C 0.562 3.438 18 O -0.539 6.539 19 C -0.190 4.190 20 C 0.164 3.836 21 N -0.475 5.475 22 C 0.141 3.859 23 C -0.098 4.098 24 C -0.092 4.092 25 C -0.121 4.121 26 C -0.085 4.085 27 C -0.114 4.114 28 C 0.012 3.988 29 C 0.122 3.878 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.403 0.597 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.030 0.970 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 -24.404 -10.846 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.004 3.996 14 H 0.078 0.922 15 C 0.007 3.993 16 N -0.363 5.363 17 C 0.347 3.653 18 O -0.417 6.417 19 C -0.195 4.195 20 C -0.010 4.010 21 N -0.182 5.182 22 C 0.020 3.980 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.139 4.139 26 C -0.104 4.104 27 C -0.116 4.116 28 C -0.015 4.015 29 C -0.005 4.005 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.238 0.762 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.048 0.952 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.160 -24.419 -10.920 27.691 hybrid contribution 0.435 1.109 0.435 1.268 sum 7.595 -23.310 -10.485 26.665 Atomic orbital electron populations 1.70041 1.05278 1.25698 1.53581 1.25066 0.95357 0.98534 1.00674 0.86219 0.79133 0.83437 0.77648 1.21387 1.21674 1.20315 1.19210 0.92684 0.84465 1.42199 0.91293 1.44059 1.34143 1.01020 1.52493 1.21439 0.89261 0.98272 0.89688 1.23331 0.99118 0.84827 0.96538 1.87788 1.41725 1.32674 1.68730 1.22819 0.87760 0.93722 0.95332 0.92229 1.21489 1.01893 0.87776 0.88175 1.45873 1.70533 1.08670 1.11208 1.17933 0.77187 0.81997 0.88133 1.90786 1.52107 1.75779 1.23033 1.21003 1.07670 0.95641 0.95170 1.23108 0.91325 0.99722 0.86843 1.67972 1.12437 1.04128 1.33690 1.19046 0.96332 0.90433 0.92206 1.20856 0.99588 0.93144 0.98063 1.21004 0.97552 0.94919 0.97757 1.20964 1.00148 1.00465 0.92359 1.21089 0.97628 0.91909 0.99773 1.18848 1.03568 0.95428 0.93707 1.21983 0.88644 0.91605 0.99260 1.21438 0.99030 0.87208 0.92868 0.93474 0.95317 0.88829 0.89977 0.94040 0.90320 0.89787 0.76168 0.81937 0.84413 0.85048 0.85219 0.84795 0.82829 0.95173 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.66 11.18 55.49 0.62 -25.04 16 2 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 3 Si 0.91 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.85 9.64 -15.06 -0.15 -6.99 16 8 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 9 N -0.59 -14.51 3.05 -171.83 -0.52 -15.03 16 10 C 0.14 3.24 5.44 -3.54 -0.02 3.22 16 11 C 0.04 0.73 6.98 37.31 0.26 1.00 16 12 O -0.39 -7.00 10.33 -35.23 -0.36 -7.36 16 13 C 0.06 1.06 2.81 -26.58 -0.07 0.98 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.87 5.34 -4.05 -0.02 1.84 16 16 N -0.71 -8.96 5.46 -61.28 -0.33 -9.30 16 17 C 0.56 7.51 7.77 -12.37 -0.10 7.41 16 18 O -0.54 -8.83 16.38 5.31 0.09 -8.75 16 19 C -0.19 -2.15 5.89 -104.83 -0.62 -2.77 16 20 C 0.16 1.73 10.68 -17.10 -0.18 1.55 16 21 N -0.48 -5.46 10.30 -10.67 -0.11 -5.57 16 22 C 0.14 1.49 6.61 -84.79 -0.56 0.93 16 23 C -0.10 -0.81 9.97 -39.48 -0.39 -1.20 16 24 C -0.09 -0.57 9.94 -39.93 -0.40 -0.96 16 25 C -0.12 -0.72 9.96 -39.92 -0.40 -1.12 16 26 C -0.09 -0.61 9.77 -39.47 -0.39 -1.00 16 27 C -0.11 -1.10 5.74 -106.81 -0.61 -1.72 16 28 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 29 C 0.12 2.46 6.02 -3.53 -0.02 2.44 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.40 4.32 6.50 -40.82 -0.27 4.05 16 38 H 0.16 1.35 6.37 -52.49 -0.33 1.02 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.15 1.43 7.70 -52.48 -0.40 1.03 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -32.83 374.72 -10.06 -42.89 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.94 Total: 2.97 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -4.11 Total: 3.36 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.35 Total: -54.93 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.28 Total: -16.11 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.83 -10.06 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035521982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.140 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds