Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00467 * 2 1 4 4 H 1.48498 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47360 * 300.00633 * 3 2 1 6 6 H 1.48504 * 109.46783 * 60.00284 * 3 2 1 7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1 10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2 11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7 12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2 13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9 14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10 15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11 16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11 17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13 18 18 O 1.21591 * 119.99903 * 359.97438 * 17 16 14 19 19 C 1.47506 * 119.99668 * 180.02562 * 17 16 14 20 20 C 1.39338 * 120.21110 * 359.71716 * 19 17 16 21 21 C 1.38319 * 120.49565 * 179.76068 * 20 19 17 22 22 C 1.37908 * 120.59377 * 0.52623 * 21 20 19 23 23 C 1.39545 * 119.98718 * 359.73139 * 22 21 20 24 24 C 1.46569 * 133.95522 * 180.02562 * 23 22 21 25 25 C 1.34203 * 106.89177 * 180.02562 * 24 23 22 26 26 N 1.36898 * 109.88581 * 359.97438 * 25 24 23 27 27 H 0.97001 * 125.01905 * 180.02562 * 26 25 24 28 28 C 1.37126 * 109.96808 * 0.02562 * 26 25 24 29 29 C 1.54180 * 104.27398 * 19.70095 * 14 13 11 30 30 O 1.43159 * 116.23666 * 264.67039 * 11 10 9 31 31 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 32 32 H 1.09005 * 113.83278 * 42.03805 * 10 9 7 33 33 H 1.09001 * 113.94876 * 270.44734 * 10 9 7 34 34 H 1.08998 * 113.83197 * 89.56732 * 12 9 7 35 35 H 1.08997 * 113.82812 * 317.96939 * 12 9 7 36 36 H 1.09004 * 110.94527 * 336.35506 * 13 11 10 37 37 H 1.09001 * 110.94402 * 212.65348 * 13 11 10 38 38 H 0.96999 * 120.00220 * 338.62328 * 16 14 13 39 39 H 1.07998 * 119.74988 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.70323 * 180.25416 * 21 20 19 41 41 H 1.07998 * 120.00864 * 179.76605 * 22 21 20 42 42 H 1.08006 * 126.55229 * 0.02562 * 24 23 22 43 43 H 1.08006 * 125.05946 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.85413 * 121.22671 * 29 14 13 45 45 H 1.09001 * 109.85355 * 242.16764 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7232 -3.8117 -0.0015 11 6 0.3507 -4.0775 0.6132 12 6 -0.1064 -2.7553 0.0004 13 6 -0.3753 -5.3339 0.1035 14 6 0.0304 -6.3898 1.1636 15 1 0.8529 -7.0031 0.7955 16 7 -1.1157 -7.2307 1.5178 17 6 -0.9161 -8.4458 2.0657 18 8 0.2152 -8.8442 2.2656 19 6 -2.0701 -9.2928 2.4218 20 6 -3.3684 -8.8386 2.1990 21 6 -4.4547 -9.6299 2.5262 22 6 -4.2715 -10.8761 3.0877 23 6 -2.9811 -11.3511 3.3255 24 6 -2.4416 -12.5912 3.8907 25 6 -1.1043 -12.4805 3.8681 26 7 -0.7460 -11.2719 3.3343 27 1 0.1663 -10.9647 3.2147 28 6 -1.8671 -10.5596 2.9935 29 6 0.4823 -5.5547 2.3783 30 8 0.3032 -4.1662 2.0413 31 1 -0.4850 0.8401 0.0004 32 1 2.5555 -4.0369 0.6655 33 1 1.8491 -4.2353 -0.9979 34 1 -0.5357 -2.8569 -0.9963 35 1 -0.7164 -2.1476 0.6687 36 1 -0.0159 -5.6172 -0.8859 37 1 -1.4549 -5.1841 0.0962 38 1 -2.0181 -6.9130 1.3581 39 1 -3.5276 -7.8631 1.7638 40 1 -5.4554 -9.2668 2.3442 41 1 -5.1265 -11.4845 3.3429 42 1 -3.0114 -13.4330 4.2557 43 1 -0.4135 -13.2331 4.2188 44 1 -0.1258 -5.8061 3.2473 45 1 1.5329 -5.7511 2.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053929721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = 47.983171 kcal Electronic energy + Delta-G solvation = -28774.452030 eV Core-core repulsion = 24759.620392 eV Total energy + Delta-G solvation = -4014.831638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.67337 -40.31407 -39.14562 -37.08423 -36.18555 -34.49340 -32.43545 -32.07776 -30.57447 -29.72664 -29.00883 -28.04426 -25.87544 -24.93807 -24.37504 -22.30338 -22.11248 -21.59596 -20.94842 -20.54089 -18.99471 -18.37017 -17.41933 -16.74075 -16.51644 -16.39414 -15.49981 -15.32860 -15.18423 -14.93755 -14.86435 -14.39154 -14.27717 -14.21672 -13.80362 -13.54851 -13.36074 -13.07625 -12.91669 -12.65044 -12.15680 -11.97315 -11.89067 -11.76494 -11.66514 -11.60465 -11.20841 -11.12179 -10.82915 -10.66292 -10.17185 -10.07741 -10.03190 -9.69903 -9.58980 -9.28779 -8.89383 -8.77360 -8.57630 -8.07988 -6.87173 -5.74248 -3.05768 0.38810 1.30777 2.20652 2.81312 2.91697 2.95201 3.41500 3.46517 3.49281 3.65269 4.21084 4.33309 4.41165 4.47271 4.59381 4.62954 4.72659 4.92014 5.02190 5.04612 5.05579 5.20169 5.21324 5.35229 5.38980 5.45791 5.56345 5.58176 5.59414 5.76153 5.89437 5.94651 5.97435 6.03566 6.17259 6.31928 6.32736 6.38664 6.39946 6.52807 6.61772 6.78764 6.91860 7.19164 7.23648 7.34172 7.50056 7.71266 7.99180 8.00324 9.06690 9.73082 10.59313 11.43526 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.002062 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.045461 B =13572.935148 C =14110.904721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.605 5.605 10 C 0.103 3.897 11 C 0.061 3.939 12 C 0.177 3.823 13 C -0.145 4.145 14 C 0.114 3.886 15 H 0.102 0.898 16 N -0.712 5.712 17 C 0.564 3.436 18 O -0.554 6.554 19 C -0.151 4.151 20 C -0.057 4.057 21 C -0.159 4.159 22 C -0.041 4.041 23 C -0.124 4.124 24 C -0.205 4.205 25 C 0.050 3.950 26 N -0.579 5.579 27 H 0.427 0.573 28 C 0.151 3.849 29 C 0.038 3.962 30 O -0.334 6.334 31 H 0.253 0.747 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.402 0.598 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.079 0.921 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -26.365 5.335 28.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.331 5.331 10 C -0.023 4.023 11 C 0.019 3.981 12 C 0.052 3.948 13 C -0.184 4.184 14 C 0.009 3.991 15 H 0.120 0.880 16 N -0.363 5.363 17 C 0.352 3.648 18 O -0.433 6.433 19 C -0.157 4.157 20 C -0.077 4.077 21 C -0.178 4.178 22 C -0.059 4.059 23 C -0.128 4.128 24 C -0.230 4.230 25 C -0.077 4.077 26 N -0.182 5.182 27 H 0.267 0.733 28 C 0.040 3.960 29 C -0.041 4.041 30 O -0.252 6.252 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.239 0.761 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.167 0.833 43 H 0.190 0.810 44 H 0.098 0.902 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.234 -26.070 5.619 27.911 hybrid contribution 0.497 0.977 -0.305 1.138 sum -7.737 -25.093 5.314 26.791 Atomic orbital electron populations 1.69814 1.05001 1.25221 1.56879 1.24776 0.95716 0.97524 1.02519 0.86028 0.78724 0.83677 0.77225 1.20480 1.21781 1.21676 1.19043 0.90279 0.81821 1.43529 0.90167 1.45865 1.01988 0.99153 1.86110 1.22922 0.95144 0.87148 0.97121 1.23806 0.97179 0.95681 0.81403 1.22148 0.88800 0.87158 0.96681 1.23209 1.02038 0.94557 0.98637 1.22482 0.89169 0.92001 0.95414 0.88039 1.46010 1.10197 1.16863 1.63235 1.18210 0.88509 0.81167 0.76873 1.90687 1.24268 1.73360 1.55023 1.18901 0.93733 0.93760 1.09343 1.21083 0.90681 0.99179 0.96732 1.20818 0.98859 0.94890 1.03252 1.20732 0.95081 0.95100 0.95018 1.19240 0.92505 0.95619 1.05470 1.21697 0.93182 0.98431 1.09645 1.21966 0.96602 0.88555 1.00528 1.42015 1.08738 1.14574 1.52879 0.73276 1.17948 0.86898 0.92437 0.98752 1.23578 1.00788 0.82639 0.97046 1.88862 1.93108 1.22660 1.20550 0.93689 0.93330 0.93917 0.93972 0.89979 0.89287 0.89819 0.76130 0.85174 0.85133 0.85490 0.83343 0.81048 0.90246 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.72 11.40 55.49 0.63 -27.09 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.22 -6.32 10.70 -15.06 -0.16 -6.49 16 8 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 9 N -0.61 -15.96 3.71 -184.63 -0.68 -16.64 16 10 C 0.10 2.15 8.49 -3.47 -0.03 2.12 16 11 C 0.06 1.16 1.28 -90.67 -0.12 1.04 16 12 C 0.18 4.19 7.05 -3.46 -0.02 4.17 16 13 C -0.15 -2.02 6.21 -25.24 -0.16 -2.17 16 14 C 0.11 1.52 3.35 -66.25 -0.22 1.30 16 15 H 0.10 1.39 7.66 -51.93 -0.40 0.99 16 16 N -0.71 -8.03 5.00 -53.22 -0.27 -8.30 16 17 C 0.56 7.12 7.76 -12.48 -0.10 7.02 16 18 O -0.55 -8.32 14.87 5.29 0.08 -8.25 16 19 C -0.15 -1.69 5.88 -104.87 -0.62 -2.30 16 20 C -0.06 -0.49 9.52 -39.14 -0.37 -0.87 16 21 C -0.16 -1.21 10.00 -39.67 -0.40 -1.61 16 22 C -0.04 -0.33 10.09 -39.21 -0.40 -0.72 16 23 C -0.12 -1.23 6.37 -105.15 -0.67 -1.90 16 24 C -0.20 -1.65 11.09 -37.65 -0.42 -2.07 16 25 C 0.05 0.38 11.82 -16.71 -0.20 0.18 16 26 N -0.58 -5.78 5.87 -10.45 -0.06 -5.84 16 27 H 0.43 4.24 7.54 -40.82 -0.31 3.93 16 28 C 0.15 1.71 6.87 -83.76 -0.58 1.14 16 29 C 0.04 0.60 7.51 37.77 0.28 0.88 16 30 O -0.33 -6.74 11.35 -35.23 -0.40 -7.14 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 34 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 2.20 7.20 -51.93 -0.37 1.82 16 36 H 0.09 1.12 7.95 -51.93 -0.41 0.71 16 37 H 0.08 1.03 7.75 -51.93 -0.40 0.63 16 38 H 0.40 3.59 6.38 -40.82 -0.26 3.33 16 39 H 0.13 0.82 6.37 -52.49 -0.33 0.49 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.08 1.19 7.93 -51.93 -0.41 0.78 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -35.63 372.16 -10.20 -45.82 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.82 Total: 4.89 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -4.26 Total: -0.64 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.38 Total: -57.87 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.32 Total: -15.38 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.63 -10.20 -45.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053929721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.808 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds