Wall clock time and date at job start Sat Apr 11 2020 06:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00467 * 2 1 4 4 H 1.48498 * 109.47358 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47360 * 300.00633 * 3 2 1 6 6 H 1.48504 * 109.46783 * 60.00284 * 3 2 1 7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1 10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2 11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7 12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2 13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9 14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10 15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11 16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11 17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13 18 18 O 1.21591 * 119.99903 * 359.97438 * 17 16 14 19 19 C 1.47506 * 119.99668 * 180.02562 * 17 16 14 20 20 C 1.39338 * 120.21110 * 359.71716 * 19 17 16 21 21 C 1.38319 * 120.49565 * 179.76068 * 20 19 17 22 22 C 1.37908 * 120.59377 * 0.52623 * 21 20 19 23 23 C 1.39545 * 119.98718 * 359.73139 * 22 21 20 24 24 C 1.46569 * 133.95522 * 180.02562 * 23 22 21 25 25 C 1.34203 * 106.89177 * 180.02562 * 24 23 22 26 26 N 1.36898 * 109.88581 * 359.97438 * 25 24 23 27 27 H 0.97001 * 125.01905 * 180.02562 * 26 25 24 28 28 C 1.37126 * 109.96808 * 0.02562 * 26 25 24 29 29 C 1.54180 * 104.27398 * 19.70095 * 14 13 11 30 30 O 1.43159 * 116.23666 * 264.67039 * 11 10 9 31 31 H 0.97005 * 119.99534 * 359.97438 * 1 2 3 32 32 H 1.09005 * 113.83278 * 42.03805 * 10 9 7 33 33 H 1.09001 * 113.94876 * 270.44734 * 10 9 7 34 34 H 1.08998 * 113.83197 * 89.56732 * 12 9 7 35 35 H 1.08997 * 113.82812 * 317.96939 * 12 9 7 36 36 H 1.09004 * 110.94527 * 336.35506 * 13 11 10 37 37 H 1.09001 * 110.94402 * 212.65348 * 13 11 10 38 38 H 0.96999 * 120.00220 * 338.62328 * 16 14 13 39 39 H 1.07998 * 119.74988 * 0.02562 * 20 19 17 40 40 H 1.08002 * 119.70323 * 180.25416 * 21 20 19 41 41 H 1.07998 * 120.00864 * 179.76605 * 22 21 20 42 42 H 1.08006 * 126.55229 * 0.02562 * 24 23 22 43 43 H 1.08006 * 125.05946 * 179.97438 * 25 24 23 44 44 H 1.09002 * 109.85413 * 121.22671 * 29 14 13 45 45 H 1.09001 * 109.85355 * 242.16764 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 1.7232 -3.8117 -0.0015 11 6 0.3507 -4.0775 0.6132 12 6 -0.1064 -2.7553 0.0004 13 6 -0.3753 -5.3339 0.1035 14 6 0.0304 -6.3898 1.1636 15 1 0.8529 -7.0031 0.7955 16 7 -1.1157 -7.2307 1.5178 17 6 -0.9161 -8.4458 2.0657 18 8 0.2152 -8.8442 2.2656 19 6 -2.0701 -9.2928 2.4218 20 6 -3.3684 -8.8386 2.1990 21 6 -4.4547 -9.6299 2.5262 22 6 -4.2715 -10.8761 3.0877 23 6 -2.9811 -11.3511 3.3255 24 6 -2.4416 -12.5912 3.8907 25 6 -1.1043 -12.4805 3.8681 26 7 -0.7460 -11.2719 3.3343 27 1 0.1663 -10.9647 3.2147 28 6 -1.8671 -10.5596 2.9935 29 6 0.4823 -5.5547 2.3783 30 8 0.3032 -4.1662 2.0413 31 1 -0.4850 0.8401 0.0004 32 1 2.5555 -4.0369 0.6655 33 1 1.8491 -4.2353 -0.9979 34 1 -0.5357 -2.8569 -0.9963 35 1 -0.7164 -2.1476 0.6687 36 1 -0.0159 -5.6172 -0.8859 37 1 -1.4549 -5.1841 0.0962 38 1 -2.0181 -6.9130 1.3581 39 1 -3.5276 -7.8631 1.7638 40 1 -5.4554 -9.2668 2.3442 41 1 -5.1265 -11.4845 3.3429 42 1 -3.0114 -13.4330 4.2557 43 1 -0.4135 -13.2331 4.2188 44 1 -0.1258 -5.8061 3.2473 45 1 1.5329 -5.7511 2.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053929721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:35 Heat of formation + Delta-G solvation = 23.297164 kcal Electronic energy + Delta-G solvation = -28775.522495 eV Core-core repulsion = 24759.620392 eV Total energy + Delta-G solvation = -4015.902104 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35153 -41.60665 -40.28030 -37.82267 -37.69366 -35.66897 -34.14708 -33.17196 -31.69127 -30.45521 -30.02064 -29.33630 -27.57119 -26.68118 -25.20553 -23.90121 -22.85722 -22.60889 -21.86733 -21.38527 -20.52857 -19.15825 -18.74476 -18.18661 -17.60695 -17.09655 -16.99374 -16.66729 -16.46863 -16.10084 -15.94654 -15.62491 -15.29004 -15.11016 -14.97083 -14.89894 -14.58682 -14.42417 -13.94293 -13.51540 -13.35329 -13.28923 -12.99563 -12.92656 -12.80628 -12.74966 -12.71520 -12.54900 -12.35849 -12.24026 -11.85917 -11.64777 -11.35340 -11.00038 -10.96546 -10.75093 -10.59308 -10.13470 -9.22202 -8.93934 -8.71322 -7.91667 -5.24125 -0.29348 0.66170 1.43683 1.45588 1.52444 1.55538 2.00476 2.05525 2.30290 2.45866 2.80497 2.95948 3.27155 3.35347 3.38931 3.62659 3.71186 3.82225 3.88851 4.03267 4.04289 4.11672 4.16177 4.33676 4.45378 4.54941 4.62999 4.66468 4.71223 4.73265 4.88051 4.88335 4.92237 4.95697 4.96939 5.03195 5.18501 5.24072 5.34311 5.38468 5.49983 5.56172 5.76463 5.81090 5.91235 6.15324 6.16707 6.42478 6.62982 6.90942 7.08731 7.58831 8.52809 9.25836 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031206 B = 0.002062 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.045461 B =13572.935148 C =14110.904721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.234 4.234 8 H 0.081 0.919 9 N -0.641 5.641 10 C 0.102 3.898 11 C 0.077 3.923 12 C 0.174 3.826 13 C -0.129 4.129 14 C 0.129 3.871 15 H 0.103 0.897 16 N -0.701 5.701 17 C 0.562 3.438 18 O -0.584 6.584 19 C -0.178 4.178 20 C -0.054 4.054 21 C -0.161 4.161 22 C -0.039 4.039 23 C -0.145 4.145 24 C -0.213 4.213 25 C 0.046 3.954 26 N -0.590 5.590 27 H 0.423 0.577 28 C 0.120 3.880 29 C 0.036 3.964 30 O -0.368 6.368 31 H 0.249 0.751 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.415 0.585 39 H 0.152 0.848 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.173 0.827 43 H 0.205 0.795 44 H 0.084 0.916 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.303 -28.302 5.072 30.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.368 5.368 10 C -0.023 4.023 11 C 0.036 3.964 12 C 0.049 3.951 13 C -0.168 4.168 14 C 0.023 3.977 15 H 0.121 0.879 16 N -0.353 5.353 17 C 0.353 3.647 18 O -0.466 6.466 19 C -0.184 4.184 20 C -0.073 4.073 21 C -0.180 4.180 22 C -0.058 4.058 23 C -0.150 4.150 24 C -0.237 4.237 25 C -0.080 4.080 26 N -0.192 5.192 27 H 0.262 0.738 28 C 0.009 3.991 29 C -0.042 4.042 30 O -0.287 6.287 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.254 0.746 39 H 0.170 0.830 40 H 0.177 0.823 41 H 0.171 0.829 42 H 0.190 0.810 43 H 0.221 0.779 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.314 -28.052 5.354 30.039 hybrid contribution 0.796 1.487 -0.154 1.694 sum -8.518 -26.565 5.200 28.378 Atomic orbital electron populations 1.69999 1.06348 1.25574 1.58242 1.25640 0.96695 1.00872 1.03006 0.84987 0.78098 0.79289 0.76805 1.19111 1.21489 1.21992 1.19416 0.90735 0.83433 1.42660 0.90171 1.46281 1.03525 1.00514 1.86442 1.23145 0.96205 0.84355 0.98572 1.23394 0.95963 0.95756 0.81264 1.22075 0.87316 0.89156 0.96591 1.23115 1.02753 0.91475 0.99461 1.22192 0.89904 0.91668 0.93886 0.87933 1.45834 1.10298 1.16278 1.62938 1.18514 0.88637 0.81301 0.76263 1.90664 1.25562 1.74052 1.56349 1.18936 0.94034 0.94013 1.11403 1.21413 0.90012 1.00117 0.95804 1.21199 0.99859 0.94567 1.02415 1.21144 0.95268 0.95523 0.93849 1.19672 0.92969 0.96330 1.06044 1.22077 0.93558 0.98581 1.09490 1.22584 0.97385 0.88278 0.99731 1.42178 1.08404 1.15348 1.53282 0.73790 1.18334 0.87892 0.93117 0.99775 1.23714 1.00977 0.81048 0.98413 1.88827 1.93209 1.25486 1.21200 0.94191 0.93574 0.91059 0.93249 0.94054 0.87000 0.87739 0.74600 0.83044 0.82285 0.82919 0.81009 0.77855 0.89748 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.86 11.40 21.65 0.25 -58.62 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.98 47.20 29.55 68.60 2.03 49.23 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 7 C -0.23 -13.73 10.70 84.03 0.90 -12.83 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 N -0.64 -34.24 3.71 -744.76 -2.76 -37.00 16 10 C 0.10 4.20 8.49 86.03 0.73 4.93 16 11 C 0.08 2.91 1.28 -10.64 -0.01 2.89 16 12 C 0.17 8.34 7.05 86.04 0.61 8.94 16 13 C -0.13 -3.27 6.21 31.56 0.20 -3.07 16 14 C 0.13 3.20 3.35 46.08 0.15 3.36 16 15 H 0.10 2.61 7.66 -2.39 -0.02 2.60 16 16 N -0.70 -14.56 5.00 -440.56 -2.20 -16.76 16 17 C 0.56 13.76 7.76 86.69 0.67 14.43 16 18 O -0.58 -17.55 14.87 -4.00 -0.06 -17.61 16 19 C -0.18 -3.81 5.88 -20.03 -0.12 -3.92 16 20 C -0.05 -0.82 9.52 22.55 0.21 -0.61 16 21 C -0.16 -2.02 10.00 22.21 0.22 -1.80 16 22 C -0.04 -0.55 10.09 22.51 0.23 -0.32 16 23 C -0.15 -2.69 6.37 -20.21 -0.13 -2.81 16 24 C -0.21 -3.08 11.09 23.52 0.26 -2.82 16 25 C 0.05 0.63 11.82 82.98 0.98 1.61 16 26 N -0.59 -11.68 5.87 -186.98 -1.10 -12.78 16 27 H 0.42 8.63 7.54 -92.71 -0.70 7.93 16 28 C 0.12 2.67 6.87 39.44 0.27 2.94 16 29 C 0.04 1.12 7.51 72.38 0.54 1.66 16 30 O -0.37 -14.91 11.35 -148.98 -1.69 -16.60 16 31 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 32 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.07 2.56 8.00 -2.39 -0.02 2.54 16 34 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.04 2.30 7.20 -2.39 -0.02 2.28 16 36 H 0.11 2.40 7.95 -2.39 -0.02 2.38 16 37 H 0.10 2.26 7.75 -2.39 -0.02 2.24 16 38 H 0.42 6.35 6.38 -92.71 -0.59 5.76 16 39 H 0.15 1.48 6.37 -2.91 -0.02 1.46 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 44 H 0.08 2.49 7.93 -2.39 -0.02 2.47 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -80.29 372.16 0.41 -79.88 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.24 Total: 21.28 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 6.19 Total: 8.97 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -5.81 Total: -125.15 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.75 Total: -34.20 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Total: -80.29 0.41 -79.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053929721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.178 kcal (2) G-P(sol) polarization free energy of solvation -80.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds