Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00350 * 2 1 4 4 H 1.48504 * 109.47184 * 270.00151 * 3 2 1 5 5 H 1.48501 * 109.47060 * 29.99732 * 3 2 1 6 6 H 1.48501 * 109.47414 * 150.00029 * 3 2 1 7 7 C 1.38821 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99583 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.47788 * 134.40454 * 179.97438 * 9 7 2 11 11 C 1.52882 * 85.78411 * 156.12864 * 10 9 7 12 12 C 1.47792 * 134.40215 * 0.02562 * 9 7 2 13 13 C 1.53469 * 115.59173 * 140.25486 * 11 10 9 14 14 C 1.54741 * 103.71867 * 152.76047 * 13 11 10 15 15 H 1.09000 * 110.51050 * 241.98011 * 14 13 11 16 16 N 1.46498 * 110.50758 * 119.40669 * 14 13 11 17 17 C 1.34777 * 119.99828 * 154.72251 * 16 14 13 18 18 O 1.21593 * 119.99949 * 0.28071 * 17 16 14 19 19 C 1.47578 * 120.00056 * 180.27917 * 17 16 14 20 20 C 1.40240 * 119.83115 * 359.97438 * 19 17 16 21 21 C 1.36202 * 120.37907 * 179.97438 * 20 19 17 22 22 C 1.39911 * 119.96017 * 0.03012 * 21 20 19 23 23 C 1.46255 * 133.84244 * 180.02562 * 22 21 20 24 24 C 1.34463 * 107.03563 * 179.97438 * 23 22 21 25 25 N 1.36559 * 109.97564 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.06905 * 179.97438 * 25 24 23 27 27 C 1.37821 * 109.85786 * 0.02562 * 25 24 23 28 28 C 1.38692 * 133.36586 * 180.35383 * 27 25 24 29 29 C 1.54547 * 104.07247 * 0.76190 * 14 13 11 30 30 O 1.43249 * 115.85563 * 265.50520 * 11 10 9 31 31 H 0.96997 * 119.99967 * 0.02562 * 1 2 3 32 32 H 1.09001 * 113.81688 * 41.90980 * 10 9 7 33 33 H 1.08997 * 113.93182 * 270.36147 * 10 9 7 34 34 H 1.08995 * 113.82615 * 89.65231 * 12 9 7 35 35 H 1.09002 * 113.81932 * 318.08051 * 12 9 7 36 36 H 1.09001 * 110.57277 * 34.20735 * 13 11 10 37 37 H 1.08991 * 110.57628 * 271.31749 * 13 11 10 38 38 H 0.97001 * 120.00384 * 335.00698 * 16 14 13 39 39 H 1.07994 * 119.81410 * 359.97438 * 20 19 17 40 40 H 1.08003 * 120.01964 * 180.02562 * 21 20 19 41 41 H 1.07997 * 126.48494 * 359.97352 * 23 22 21 42 42 H 1.07998 * 125.01123 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.17414 * 359.90575 * 28 27 25 44 44 H 1.08996 * 110.32942 * 95.26235 * 29 14 13 45 45 H 1.08999 * 110.32540 * 217.47709 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7228 -3.8116 0.0005 11 6 0.3497 -4.0781 0.6176 12 6 -0.1060 -2.7556 -0.0004 13 6 -0.3743 -5.3315 0.1075 14 6 -1.2808 -5.7397 1.2933 15 1 -1.0069 -6.7288 1.6605 16 7 -2.6902 -5.7138 0.8945 17 6 -3.5879 -6.4833 1.5414 18 8 -3.2288 -7.1952 2.4594 19 6 -5.0066 -6.4618 1.1357 20 6 -5.4170 -5.6390 0.0768 21 6 -6.7235 -5.6108 -0.3073 22 6 -7.6642 -6.4057 0.3567 23 6 -9.1043 -6.6110 0.2052 24 6 -9.4748 -7.5061 1.1377 25 7 -8.3899 -7.8904 1.8726 26 1 -8.4092 -8.5280 2.6033 27 6 -7.2637 -7.2362 1.4220 28 6 -5.9302 -7.2633 1.8025 29 6 -1.0021 -4.6639 2.3672 30 8 0.3100 -4.1461 2.0479 31 1 -0.4850 0.8400 -0.0004 32 1 2.5559 -4.0360 0.6666 33 1 1.8477 -4.2357 -0.9957 34 1 -0.5332 -2.8597 -0.9977 35 1 -0.7174 -2.1461 0.6650 36 1 0.3413 -6.1223 -0.1175 37 1 -0.9753 -5.0960 -0.7707 38 1 -2.9767 -5.1459 0.1621 39 1 -4.6931 -5.0241 -0.4371 40 1 -7.0331 -4.9753 -1.1237 41 1 -9.7484 -6.1340 -0.5186 42 1 -10.4818 -7.8683 1.2835 43 1 -5.6102 -7.8997 2.6144 44 1 -1.7467 -3.8700 2.3100 45 1 -1.0008 -5.1121 3.3607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053940646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = 50.275424 kcal Electronic energy + Delta-G solvation = -28677.828719 eV Core-core repulsion = 24663.096480 eV Total energy + Delta-G solvation = -4014.732238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57893 -40.32126 -39.24218 -36.83579 -36.07005 -34.43355 -32.27706 -32.06341 -30.83559 -29.58894 -29.13743 -27.90818 -25.82869 -24.90750 -23.98283 -22.83378 -22.09319 -21.10475 -20.94995 -20.44381 -19.01177 -18.64772 -17.23369 -16.75396 -16.52360 -16.21614 -15.27053 -15.17692 -15.02713 -14.95384 -14.66529 -14.51561 -14.24989 -14.04377 -13.84496 -13.52904 -13.41907 -13.06554 -12.96719 -12.71979 -12.17415 -12.10388 -11.87766 -11.62593 -11.51308 -11.28062 -11.12810 -11.07705 -10.81430 -10.42229 -10.26799 -10.08099 -9.98125 -9.75516 -9.49716 -9.09510 -8.86138 -8.77439 -8.56893 -8.07452 -6.85544 -5.72903 -3.04272 0.52668 1.20387 2.25046 2.67813 2.88596 3.14639 3.42342 3.47161 3.49421 3.74743 4.31542 4.37661 4.49301 4.49794 4.59301 4.74723 4.81327 4.97814 5.01594 5.08543 5.18406 5.23512 5.26079 5.38476 5.43602 5.47910 5.59839 5.63780 5.71376 5.88473 6.01213 6.05319 6.09401 6.11863 6.21751 6.28752 6.37844 6.39095 6.43688 6.54851 6.61471 6.76956 6.97297 7.11695 7.21079 7.46237 7.51031 7.68649 8.01362 8.15633 9.07970 9.74415 10.61214 11.44618 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.002275 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.533923 B =12305.860786 C =13375.536673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.080 0.920 9 N -0.605 5.605 10 C 0.129 3.871 11 C 0.055 3.945 12 C 0.153 3.847 13 C -0.147 4.147 14 C 0.114 3.886 15 H 0.102 0.898 16 N -0.711 5.711 17 C 0.562 3.438 18 O -0.543 6.543 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.078 4.078 22 C -0.087 4.087 23 C -0.210 4.210 24 C 0.059 3.941 25 N -0.592 5.592 26 H 0.417 0.583 27 C 0.079 3.921 28 C -0.060 4.060 29 C 0.038 3.962 30 O -0.335 6.335 31 H 0.253 0.747 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.404 0.596 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.172 0.828 43 H 0.134 0.866 44 H 0.063 0.937 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.366 -17.788 0.019 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.331 5.331 10 C 0.003 3.997 11 C 0.014 3.986 12 C 0.027 3.973 13 C -0.186 4.186 14 C 0.009 3.991 15 H 0.120 0.880 16 N -0.364 5.364 17 C 0.350 3.650 18 O -0.421 6.421 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.096 4.096 22 C -0.092 4.092 23 C -0.235 4.235 24 C -0.069 4.069 25 N -0.195 5.195 26 H 0.254 0.746 27 C -0.027 4.027 28 C -0.081 4.081 29 C -0.041 4.041 30 O -0.252 6.252 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.240 0.760 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.166 0.834 42 H 0.189 0.811 43 H 0.152 0.848 44 H 0.082 0.918 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.877 -17.943 0.936 26.061 hybrid contribution -0.019 0.908 -0.264 0.946 sum -18.896 -17.035 0.672 25.450 Atomic orbital electron populations 1.69802 1.05005 1.25239 1.56948 1.24765 0.95703 0.97486 1.02577 0.86108 0.78674 0.83441 0.77476 1.21684 1.21656 1.20615 1.19005 0.90271 0.81851 1.43467 0.90189 1.45838 1.02014 0.99185 1.86070 1.22517 0.93963 0.86593 0.96640 1.23771 0.98728 0.94228 0.81888 1.22602 0.88791 0.89031 0.96868 1.23042 0.98777 0.99234 0.97570 1.22456 0.79793 1.01141 0.95703 0.88003 1.45983 1.08011 1.45205 1.37190 1.18159 0.85353 0.79493 0.81980 1.90768 1.80536 1.41393 1.29437 1.19495 0.92875 1.00695 0.99042 1.20787 0.96413 0.99124 0.96838 1.20205 0.91708 0.98233 0.99474 1.19417 0.94088 0.98757 0.96919 1.21761 0.93249 1.04631 1.03871 1.21907 0.91914 0.98922 0.94127 1.41778 1.05937 1.39594 1.32200 0.74574 1.18089 0.88433 0.98094 0.98090 1.20061 0.88709 0.99308 1.00038 1.23791 0.86810 0.94992 0.98492 1.89035 1.30926 1.85106 1.20141 0.93731 0.92883 0.93451 0.94832 0.90435 0.89712 0.89751 0.75967 0.85271 0.85210 0.83352 0.81063 0.84804 0.91836 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 11.40 55.49 0.63 -26.97 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.88 3.71 -183.56 -0.68 -16.56 16 10 C 0.13 2.69 8.47 -3.40 -0.03 2.66 16 11 C 0.06 1.06 1.28 -90.64 -0.12 0.94 16 12 C 0.15 3.56 7.00 -3.38 -0.02 3.54 16 13 C -0.15 -2.09 6.25 -25.57 -0.16 -2.25 16 14 C 0.11 1.60 3.49 -66.20 -0.23 1.37 16 15 H 0.10 1.45 7.55 -51.93 -0.39 1.06 16 16 N -0.71 -8.83 5.03 -53.16 -0.27 -9.09 16 17 C 0.56 7.63 7.76 -12.45 -0.10 7.54 16 18 O -0.54 -8.97 15.96 5.28 0.08 -8.89 16 19 C -0.12 -1.37 5.87 -104.95 -0.62 -1.99 16 20 C -0.11 -1.12 9.46 -39.56 -0.37 -1.50 16 21 C -0.08 -0.74 10.03 -39.69 -0.40 -1.14 16 22 C -0.09 -0.86 6.37 -105.05 -0.67 -1.53 16 23 C -0.21 -1.61 11.08 -37.70 -0.42 -2.02 16 24 C 0.06 0.34 11.81 -16.78 -0.20 0.15 16 25 N -0.59 -4.05 6.07 -10.68 -0.06 -4.11 16 26 H 0.42 1.67 8.96 -40.82 -0.37 1.31 16 27 C 0.08 0.79 7.26 -84.00 -0.61 0.18 16 28 C -0.06 -0.66 9.61 -39.02 -0.37 -1.04 16 29 C 0.04 0.62 7.37 37.97 0.28 0.90 16 30 O -0.33 -6.85 11.44 -35.23 -0.40 -7.25 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.03 0.76 7.96 -51.93 -0.41 0.35 16 35 H 0.08 2.05 7.19 -51.93 -0.37 1.67 16 36 H 0.08 1.08 8.12 -51.93 -0.42 0.65 16 37 H 0.08 1.07 7.39 -51.93 -0.38 0.69 16 38 H 0.40 4.24 6.37 -40.82 -0.26 3.98 16 39 H 0.13 1.06 6.36 -52.49 -0.33 0.73 16 40 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 41 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 43 H 0.13 1.44 7.62 -52.49 -0.40 1.04 16 44 H 0.06 1.08 8.06 -51.93 -0.42 0.67 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 374.10 15.07 5.64 5.64 Total: -1.00 -36.38 374.10 -10.22 -46.60 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.84 Total: 4.10 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -4.29 Total: -0.99 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.38 Total: -56.74 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.32 Total: -16.14 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.38 -10.22 -46.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053940646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.873 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds