Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00350 * 2 1 4 4 H 1.48504 * 109.47184 * 270.00151 * 3 2 1 5 5 H 1.48501 * 109.47060 * 29.99732 * 3 2 1 6 6 H 1.48501 * 109.47414 * 150.00029 * 3 2 1 7 7 C 1.38821 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99583 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.47788 * 134.40454 * 179.97438 * 9 7 2 11 11 C 1.52882 * 85.78411 * 156.12864 * 10 9 7 12 12 C 1.47792 * 134.40215 * 0.02562 * 9 7 2 13 13 C 1.53469 * 115.59173 * 140.25486 * 11 10 9 14 14 C 1.54741 * 103.71867 * 152.76047 * 13 11 10 15 15 H 1.09000 * 110.51050 * 241.98011 * 14 13 11 16 16 N 1.46498 * 110.50758 * 119.40669 * 14 13 11 17 17 C 1.34777 * 119.99828 * 154.72251 * 16 14 13 18 18 O 1.21593 * 119.99949 * 0.28071 * 17 16 14 19 19 C 1.47578 * 120.00056 * 180.27917 * 17 16 14 20 20 C 1.40240 * 119.83115 * 359.97438 * 19 17 16 21 21 C 1.36202 * 120.37907 * 179.97438 * 20 19 17 22 22 C 1.39911 * 119.96017 * 0.03012 * 21 20 19 23 23 C 1.46255 * 133.84244 * 180.02562 * 22 21 20 24 24 C 1.34463 * 107.03563 * 179.97438 * 23 22 21 25 25 N 1.36559 * 109.97564 * 359.97438 * 24 23 22 26 26 H 0.96999 * 125.06905 * 179.97438 * 25 24 23 27 27 C 1.37821 * 109.85786 * 0.02562 * 25 24 23 28 28 C 1.38692 * 133.36586 * 180.35383 * 27 25 24 29 29 C 1.54547 * 104.07247 * 0.76190 * 14 13 11 30 30 O 1.43249 * 115.85563 * 265.50520 * 11 10 9 31 31 H 0.96997 * 119.99967 * 0.02562 * 1 2 3 32 32 H 1.09001 * 113.81688 * 41.90980 * 10 9 7 33 33 H 1.08997 * 113.93182 * 270.36147 * 10 9 7 34 34 H 1.08995 * 113.82615 * 89.65231 * 12 9 7 35 35 H 1.09002 * 113.81932 * 318.08051 * 12 9 7 36 36 H 1.09001 * 110.57277 * 34.20735 * 13 11 10 37 37 H 1.08991 * 110.57628 * 271.31749 * 13 11 10 38 38 H 0.97001 * 120.00384 * 335.00698 * 16 14 13 39 39 H 1.07994 * 119.81410 * 359.97438 * 20 19 17 40 40 H 1.08003 * 120.01964 * 180.02562 * 21 20 19 41 41 H 1.07997 * 126.48494 * 359.97352 * 23 22 21 42 42 H 1.07998 * 125.01123 * 180.02562 * 24 23 22 43 43 H 1.08000 * 120.17414 * 359.90575 * 28 27 25 44 44 H 1.08996 * 110.32942 * 95.26235 * 29 14 13 45 45 H 1.08999 * 110.32540 * 217.47709 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7228 -3.8116 0.0005 11 6 0.3497 -4.0781 0.6176 12 6 -0.1060 -2.7556 -0.0004 13 6 -0.3743 -5.3315 0.1075 14 6 -1.2808 -5.7397 1.2933 15 1 -1.0069 -6.7288 1.6605 16 7 -2.6902 -5.7138 0.8945 17 6 -3.5879 -6.4833 1.5414 18 8 -3.2288 -7.1952 2.4594 19 6 -5.0066 -6.4618 1.1357 20 6 -5.4170 -5.6390 0.0768 21 6 -6.7235 -5.6108 -0.3073 22 6 -7.6642 -6.4057 0.3567 23 6 -9.1043 -6.6110 0.2052 24 6 -9.4748 -7.5061 1.1377 25 7 -8.3899 -7.8904 1.8726 26 1 -8.4092 -8.5280 2.6033 27 6 -7.2637 -7.2362 1.4220 28 6 -5.9302 -7.2633 1.8025 29 6 -1.0021 -4.6639 2.3672 30 8 0.3100 -4.1461 2.0479 31 1 -0.4850 0.8400 -0.0004 32 1 2.5559 -4.0360 0.6666 33 1 1.8477 -4.2357 -0.9957 34 1 -0.5332 -2.8597 -0.9977 35 1 -0.7174 -2.1461 0.6650 36 1 0.3413 -6.1223 -0.1175 37 1 -0.9753 -5.0960 -0.7707 38 1 -2.9767 -5.1459 0.1621 39 1 -4.6931 -5.0241 -0.4371 40 1 -7.0331 -4.9753 -1.1237 41 1 -9.7484 -6.1340 -0.5186 42 1 -10.4818 -7.8683 1.2835 43 1 -5.6102 -7.8997 2.6144 44 1 -1.7467 -3.8700 2.3100 45 1 -1.0008 -5.1121 3.3607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053940646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = 24.797687 kcal Electronic energy + Delta-G solvation = -28678.933517 eV Core-core repulsion = 24663.096480 eV Total energy + Delta-G solvation = -4015.837036 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.24086 -41.62690 -40.47198 -37.84565 -37.45493 -35.69170 -34.12611 -32.96476 -31.98316 -30.45676 -30.08068 -29.35746 -27.53456 -26.65256 -24.89195 -23.84476 -23.55594 -22.23284 -21.59776 -21.43317 -20.62302 -19.40348 -18.74085 -18.00531 -17.61996 -17.02884 -16.98960 -16.67045 -16.42277 -16.13066 -15.87212 -15.54027 -15.28497 -15.00276 -14.81003 -14.73579 -14.61073 -14.34157 -14.21234 -13.91731 -13.59088 -13.20011 -13.01502 -12.96384 -12.83380 -12.73701 -12.61920 -12.53556 -12.26484 -12.01778 -11.77209 -11.63676 -11.31141 -11.08030 -10.90594 -10.77069 -10.53460 -10.15068 -9.27906 -8.91031 -8.70266 -7.89313 -5.21437 -0.25364 0.47276 1.44611 1.47205 1.55551 1.60069 1.93355 2.03405 2.32237 2.47750 2.90063 2.94561 3.28808 3.41699 3.52848 3.66159 3.72161 3.77586 3.81230 3.98485 4.12338 4.16731 4.21995 4.30449 4.38234 4.60982 4.68195 4.69973 4.72346 4.75512 4.84856 4.91093 4.93030 4.96913 5.01671 5.03351 5.16550 5.24538 5.30175 5.44882 5.49617 5.51667 5.68132 5.77308 5.93841 6.09938 6.12082 6.46800 6.66244 6.93172 7.12883 7.61362 8.55797 9.27608 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.002275 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.533923 B =12305.860786 C =13375.536673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.641 5.641 10 C 0.128 3.872 11 C 0.071 3.929 12 C 0.152 3.848 13 C -0.132 4.132 14 C 0.127 3.873 15 H 0.106 0.894 16 N -0.702 5.702 17 C 0.564 3.436 18 O -0.578 6.578 19 C -0.139 4.139 20 C -0.115 4.115 21 C -0.085 4.085 22 C -0.102 4.102 23 C -0.234 4.234 24 C 0.078 3.922 25 N -0.586 5.586 26 H 0.430 0.570 27 C 0.060 3.940 28 C -0.066 4.066 29 C 0.034 3.966 30 O -0.366 6.366 31 H 0.248 0.752 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.414 0.586 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.166 0.834 42 H 0.215 0.785 43 H 0.129 0.871 44 H 0.052 0.948 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.753 -19.189 -0.996 28.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.368 5.368 10 C 0.003 3.997 11 C 0.030 3.970 12 C 0.026 3.974 13 C -0.170 4.170 14 C 0.021 3.979 15 H 0.124 0.876 16 N -0.355 5.355 17 C 0.354 3.646 18 O -0.459 6.459 19 C -0.143 4.143 20 C -0.135 4.135 21 C -0.103 4.103 22 C -0.108 4.108 23 C -0.259 4.259 24 C -0.049 4.049 25 N -0.190 5.190 26 H 0.269 0.731 27 C -0.047 4.047 28 C -0.088 4.088 29 C -0.043 4.043 30 O -0.284 6.284 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.252 0.748 39 H 0.161 0.839 40 H 0.167 0.833 41 H 0.184 0.816 42 H 0.232 0.768 43 H 0.147 0.853 44 H 0.070 0.930 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.261 -19.381 -0.090 28.038 hybrid contribution 0.298 1.280 0.105 1.318 sum -19.962 -18.101 0.015 26.947 Atomic orbital electron populations 1.69991 1.06317 1.25473 1.58359 1.25617 0.96668 1.00798 1.03142 0.85075 0.77575 0.79091 0.77577 1.20925 1.22131 1.19629 1.19391 0.90780 0.83437 1.42505 0.90079 1.46254 1.03590 1.00550 1.86402 1.22765 0.94843 0.83805 0.98284 1.23443 0.97651 0.94408 0.81489 1.22559 0.87246 0.90871 0.96705 1.22978 0.99019 0.97166 0.97861 1.22240 0.80659 1.00187 0.94785 0.87574 1.45876 1.07301 1.45097 1.37260 1.18451 0.86135 0.78770 0.81292 1.90740 1.81201 1.42973 1.31021 1.19416 0.91848 1.02452 1.00563 1.20935 0.97161 0.98972 0.96456 1.20482 0.91498 0.98421 0.99948 1.19869 0.95565 0.98521 0.96795 1.22097 0.92323 1.05997 1.05435 1.22627 0.93021 0.97051 0.92231 1.41910 1.05355 1.39277 1.32438 0.73066 1.18159 0.88738 0.99048 0.98744 1.20098 0.89501 0.99239 0.99938 1.23913 0.85079 0.95402 0.99951 1.88999 1.32790 1.85587 1.21003 0.94348 0.93009 0.90203 0.94100 0.94503 0.86927 0.87690 0.74760 0.83878 0.83321 0.81620 0.76835 0.85349 0.93005 0.88527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.55 11.40 21.65 0.25 -58.30 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.23 -13.56 10.70 84.04 0.90 -12.66 16 8 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 9 N -0.64 -33.95 3.71 -740.91 -2.75 -36.69 16 10 C 0.13 5.18 8.47 86.09 0.73 5.91 16 11 C 0.07 2.67 1.28 -10.65 -0.01 2.66 16 12 C 0.15 7.17 7.00 86.10 0.60 7.77 16 13 C -0.13 -3.41 6.25 31.35 0.20 -3.22 16 14 C 0.13 3.41 3.49 46.11 0.16 3.57 16 15 H 0.11 2.86 7.55 -2.39 -0.02 2.84 16 16 N -0.70 -16.87 5.03 -440.35 -2.22 -19.08 16 17 C 0.56 15.31 7.76 86.71 0.67 15.99 16 18 O -0.58 -19.35 15.96 -4.01 -0.06 -19.41 16 19 C -0.14 -3.26 5.87 -20.07 -0.12 -3.38 16 20 C -0.12 -2.26 9.46 22.28 0.21 -2.05 16 21 C -0.09 -1.54 10.03 22.20 0.22 -1.32 16 22 C -0.10 -1.91 6.37 -20.14 -0.13 -2.04 16 23 C -0.23 -3.03 11.08 23.49 0.26 -2.77 16 24 C 0.08 0.67 11.81 83.09 0.98 1.65 16 25 N -0.59 -6.84 6.07 -187.71 -1.14 -7.98 16 26 H 0.43 2.61 8.96 -92.71 -0.83 1.77 16 27 C 0.06 1.15 7.26 38.96 0.28 1.43 16 28 C -0.07 -1.49 9.61 22.63 0.22 -1.27 16 29 C 0.03 1.15 7.37 72.51 0.53 1.68 16 30 O -0.37 -15.05 11.44 -148.98 -1.70 -16.76 16 31 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.04 1.85 7.96 -2.39 -0.02 1.84 16 35 H 0.04 2.02 7.19 -2.39 -0.02 2.01 16 36 H 0.11 2.41 8.12 -2.39 -0.02 2.39 16 37 H 0.10 2.34 7.39 -2.39 -0.02 2.32 16 38 H 0.41 8.22 6.37 -92.71 -0.59 7.63 16 39 H 0.14 2.22 6.36 -2.91 -0.02 2.20 16 40 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 41 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.22 -0.11 8.06 -2.91 -0.02 -0.13 16 43 H 0.13 2.88 7.62 -2.91 -0.02 2.86 16 44 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 45 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -81.46 374.10 0.21 -81.25 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -0.37 Total: 19.53 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 6.18 Total: 8.35 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -5.85 Total: -122.06 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -1.77 Total: -36.17 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -81.46 0.21 -81.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053940646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.044 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds