Wall clock time and date at job start Sat Apr 11 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48503 * 109.47308 * 274.98963 * 3 2 1 5 5 H 1.48500 * 109.47047 * 34.98968 * 3 2 1 6 6 H 1.48502 * 109.46917 * 154.98988 * 3 2 1 7 7 C 1.38813 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00062 * 186.84237 * 7 2 1 9 9 N 1.36929 * 119.99949 * 6.84397 * 7 2 1 10 10 C 1.46709 * 125.32268 * 173.76942 * 9 7 2 11 11 C 1.54042 * 106.82823 * 161.84117 * 10 9 7 12 12 H 1.08997 * 113.43168 * 262.66752 * 11 10 9 13 13 C 1.55124 * 108.25637 * 135.80858 * 11 10 9 14 14 C 1.54856 * 101.77633 * 286.08697 * 13 11 10 15 15 N 1.47396 * 104.81115 * 322.81657 * 14 13 11 16 16 C 1.34778 * 125.59191 * 204.60757 * 15 14 13 17 17 O 1.21282 * 120.00443 * 180.02562 * 16 15 14 18 18 C 1.50703 * 119.99760 * 0.02592 * 16 15 14 19 19 C 1.50698 * 109.47154 * 180.02562 * 18 16 15 20 20 N 1.29745 * 126.28627 * 269.99836 * 19 18 16 21 21 O 1.41361 * 109.73909 * 179.97438 * 20 19 18 22 22 C 1.34822 * 109.32785 * 359.74043 * 21 20 19 23 23 C 1.38983 * 133.44842 * 179.52225 * 22 21 20 24 24 C 1.37797 * 119.79411 * 180.45536 * 23 22 21 25 25 C 1.38779 * 120.60175 * 0.22883 * 24 23 22 26 26 C 1.36622 * 120.51460 * 0.04504 * 25 24 23 27 27 C 1.39677 * 119.79397 * 359.97438 * 26 25 24 28 28 C 1.46733 * 108.82081 * 24.87188 * 15 14 13 29 29 H 1.09005 * 111.33118 * 235.85967 * 28 15 14 30 30 C 1.46637 * 125.32510 * 353.79220 * 9 7 2 31 31 H 0.97004 * 120.00259 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.98857 * 42.49598 * 10 9 7 33 33 H 1.08997 * 109.98951 * 281.18345 * 10 9 7 34 34 H 1.09003 * 110.96776 * 167.97088 * 13 11 10 35 35 H 1.08999 * 111.00092 * 44.22729 * 13 11 10 36 36 H 1.09003 * 110.36863 * 203.98710 * 14 13 11 37 37 H 1.09000 * 110.37037 * 81.65241 * 14 13 11 38 38 H 1.09000 * 109.46898 * 59.99842 * 18 16 15 39 39 H 1.09002 * 109.46943 * 300.00059 * 18 16 15 40 40 H 1.08002 * 120.09829 * 0.72602 * 23 22 21 41 41 H 1.08004 * 119.69869 * 180.25569 * 24 23 22 42 42 H 1.08002 * 119.74082 * 180.02562 * 25 24 23 43 43 H 1.08001 * 120.09995 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.75529 * 300.91241 * 30 9 7 45 45 H 1.08995 * 109.75427 * 61.60761 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4120 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0845 -1.2055 0.1109 9 7 1.3330 -2.3837 -0.1424 10 6 1.9536 -3.7050 -0.2886 11 6 0.8688 -4.7466 0.0445 12 1 0.9189 -5.1116 1.0703 13 6 0.9372 -5.8759 -1.0168 14 6 0.3177 -5.1833 -2.2556 15 7 -0.7604 -4.3366 -1.7140 16 6 -1.8483 -3.9219 -2.3930 17 8 -2.6755 -3.2242 -1.8454 18 6 -2.0368 -4.3252 -3.8328 19 6 -3.3210 -3.7349 -4.3558 20 7 -4.4934 -4.2890 -4.3150 21 8 -5.4487 -3.4289 -4.9030 22 6 -4.8383 -2.2999 -5.3160 23 6 -5.2869 -1.1488 -5.9526 24 6 -4.3949 -0.1446 -6.2603 25 6 -3.0496 -0.2734 -5.9445 26 6 -2.5875 -1.3993 -5.3237 27 6 -3.4751 -2.4292 -5.0034 28 6 -0.4519 -4.0138 -0.3163 29 1 -1.2638 -4.3106 0.3477 30 6 -0.1262 -2.5263 -0.1724 31 1 -0.4851 0.8401 0.0004 32 1 2.7894 -3.8027 0.4042 33 1 2.3003 -3.8425 -1.3128 34 1 0.3402 -6.7351 -0.7111 35 1 1.9692 -6.1691 -1.2092 36 1 -0.0912 -5.9261 -2.9406 37 1 1.0642 -4.5704 -2.7606 38 1 -2.0811 -5.4121 -3.9028 39 1 -1.1999 -3.9567 -4.4259 40 1 -6.3322 -1.0399 -6.2015 41 1 -4.7459 0.7510 -6.7514 42 1 -2.3627 0.5224 -6.1917 43 1 -1.5393 -1.4923 -5.0807 44 1 -0.5531 -2.1413 0.7537 45 1 -0.5326 -1.9770 -1.0215 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076008779.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:03 Heat of formation + Delta-G solvation = 72.168309 kcal Electronic energy + Delta-G solvation = -30044.869269 eV Core-core repulsion = 26031.086377 eV Total energy + Delta-G solvation = -4013.782892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.79780 -40.25219 -38.03331 -37.73255 -34.84349 -34.50662 -32.30069 -30.93656 -30.75078 -30.13192 -29.81900 -28.39668 -26.33010 -24.72631 -23.40039 -22.80076 -22.73138 -21.26943 -20.37102 -19.57998 -18.56893 -17.61003 -17.28069 -17.08243 -16.66327 -16.05766 -15.65492 -15.54822 -15.14914 -14.61978 -14.50559 -14.07348 -13.90026 -13.78958 -13.49978 -13.19289 -12.95293 -12.83804 -12.43427 -12.33723 -12.27875 -12.10590 -11.88815 -11.59337 -11.34951 -11.20294 -11.19171 -11.05889 -11.02630 -10.76550 -10.51297 -10.27027 -10.18391 -9.90930 -9.70753 -9.53625 -8.99645 -8.65980 -8.58172 -8.25371 -6.82020 -5.69935 -3.05240 0.57340 1.22722 1.94112 2.46462 2.87356 3.23187 3.38993 3.43992 3.47089 3.56729 3.92610 4.18671 4.47273 4.50358 4.53640 4.71747 4.83528 4.92026 5.00834 5.05594 5.09451 5.15498 5.22455 5.33787 5.44559 5.46936 5.53712 5.66560 5.70282 5.71558 5.79731 5.83940 5.97753 6.02078 6.15198 6.17019 6.28917 6.29176 6.42858 6.51563 6.55548 6.60326 6.82645 7.20477 7.49647 7.66908 7.84209 7.89867 8.27801 8.44306 9.22048 9.83510 10.47266 11.40130 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.004116 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.196429 B = 6800.650856 C = 8959.031298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.142 3.858 11 C -0.111 4.111 12 H 0.099 0.901 13 C -0.124 4.124 14 C 0.097 3.903 15 N -0.601 5.601 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.071 4.071 19 C 0.160 3.840 20 N -0.280 5.280 21 O -0.093 6.093 22 C 0.084 3.916 23 C -0.130 4.130 24 C -0.061 4.061 25 C -0.149 4.149 26 C -0.030 4.030 27 C -0.183 4.183 28 C 0.117 3.883 29 H 0.078 0.922 30 C 0.175 3.825 31 H 0.253 0.747 32 H 0.034 0.966 33 H 0.019 0.981 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.048 0.952 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -9.469 -12.679 16.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.130 4.130 12 H 0.117 0.883 13 C -0.162 4.162 14 C -0.026 4.026 15 N -0.335 5.335 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.112 4.112 19 C -0.022 4.022 20 N -0.023 5.023 21 O -0.104 6.104 22 C 0.030 3.970 23 C -0.150 4.150 24 C -0.081 4.081 25 C -0.168 4.168 26 C -0.050 4.050 27 C -0.187 4.187 28 C 0.014 3.986 29 H 0.096 0.904 30 C 0.049 3.951 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.066 0.934 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.277 -9.878 -12.068 16.171 hybrid contribution 0.926 1.542 -0.123 1.803 sum -3.351 -8.336 -12.191 15.144 Atomic orbital electron populations 1.70006 1.04803 1.25135 1.55894 1.24848 0.95623 0.97654 1.01911 0.86170 0.78702 0.83845 0.77474 1.21655 1.21754 1.20616 1.19003 0.91022 0.82472 1.43954 0.90438 1.44224 1.01372 1.01193 1.86098 1.21303 0.93840 0.85726 0.97556 1.23158 0.95756 0.95155 0.98966 0.88331 1.22747 1.01274 0.97450 0.94727 1.22393 0.90064 0.93251 0.96900 1.48317 1.20966 1.50904 1.13358 1.19474 0.81104 0.80758 0.86870 1.90812 1.42515 1.36498 1.69491 1.20238 0.92579 1.03036 0.95336 1.23725 0.94507 0.91668 0.92253 1.79813 0.97812 1.10985 1.13676 1.89122 1.30372 1.23752 1.67133 1.20264 0.91375 0.89653 0.95731 1.20006 1.01111 0.90849 1.03008 1.21131 0.92886 0.97475 0.96586 1.20820 0.96079 0.98301 1.01551 1.20521 0.99674 0.91146 0.93640 1.20599 0.94250 0.96355 1.07451 1.22505 0.96048 0.99212 0.80862 0.90387 1.21141 0.84397 0.87601 1.01917 0.93637 0.94807 0.96346 0.90983 0.89827 0.91075 0.90751 0.86378 0.85984 0.84516 0.84374 0.84715 0.84758 0.93381 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.40 10.29 55.49 0.57 -26.83 16 2 C 0.00 -0.09 5.48 -17.43 -0.10 -0.18 16 3 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.51 10.23 -15.06 -0.15 -6.67 16 8 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 9 N -0.60 -15.04 3.38 -172.35 -0.58 -15.62 16 10 C 0.14 2.72 6.45 -3.38 -0.02 2.69 16 11 C -0.11 -1.73 4.35 -87.74 -0.38 -2.11 16 12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.39 6.35 -24.63 -0.16 -1.55 16 14 C 0.10 1.16 6.22 -2.57 -0.02 1.15 16 15 N -0.60 -9.93 2.99 -162.72 -0.49 -10.42 16 16 C 0.53 9.43 7.40 -10.98 -0.08 9.35 16 17 O -0.52 -11.83 15.91 5.56 0.09 -11.74 16 18 C -0.07 -0.92 5.30 -29.03 -0.15 -1.07 16 19 C 0.16 2.51 5.95 -80.12 -0.48 2.03 16 20 N -0.28 -4.80 12.81 34.91 0.45 -4.35 16 21 O -0.09 -1.58 12.06 7.68 0.09 -1.49 16 22 C 0.08 1.27 7.48 -38.47 -0.29 0.99 16 23 C -0.13 -1.54 10.07 -39.47 -0.40 -1.94 16 24 C -0.06 -0.63 10.02 -39.54 -0.40 -1.03 16 25 C -0.15 -1.71 9.97 -39.97 -0.40 -2.11 16 26 C -0.03 -0.41 10.05 -39.63 -0.40 -0.80 16 27 C -0.18 -2.82 6.32 -105.17 -0.67 -3.49 16 28 C 0.12 2.23 3.55 -66.61 -0.24 1.99 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 30 C 0.17 4.34 4.92 -3.99 -0.02 4.32 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.35 6.52 -51.93 -0.34 0.01 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.07 0.61 7.45 -51.93 -0.39 0.23 16 37 H 0.07 0.93 7.18 -51.93 -0.37 0.56 16 38 H 0.12 1.16 7.84 -51.93 -0.41 0.76 16 39 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.05 1.37 7.50 -51.93 -0.39 0.98 16 45 H 0.06 1.66 6.51 -51.93 -0.34 1.32 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -36.36 368.62 -9.68 -46.04 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.00 Total: 0.24 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -4.34 Total: 1.57 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.05 Total: -57.22 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.18 Total: -13.23 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.36 -9.68 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076008779.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.213 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds