Wall clock time and date at job start Sat Apr 11 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99899 * 2 1 4 4 H 1.48505 * 109.47219 * 234.49261 * 3 2 1 5 5 H 1.48498 * 109.47210 * 114.49464 * 3 2 1 6 6 H 1.48497 * 109.47206 * 354.49366 * 3 2 1 7 7 C 1.38809 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00101 * 15.13609 * 7 2 1 9 9 N 1.36937 * 120.00423 * 195.13821 * 7 2 1 10 10 C 1.47022 * 125.64503 * 9.75579 * 9 7 2 11 11 C 1.54333 * 107.26472 * 178.84822 * 10 9 7 12 12 H 1.09000 * 110.51773 * 96.44490 * 11 10 9 13 13 O 1.42905 * 111.00317 * 219.59862 * 11 10 9 14 14 C 1.55165 * 103.02173 * 338.13783 * 11 10 9 15 15 H 1.08996 * 110.99848 * 277.23442 * 14 11 10 16 16 N 1.46498 * 111.03597 * 153.39707 * 14 11 10 17 17 C 1.34774 * 119.99484 * 161.33257 * 16 14 11 18 18 O 1.21277 * 120.00566 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00029 * 180.02562 * 17 16 14 20 20 C 1.50699 * 109.47530 * 179.97438 * 19 17 16 21 21 C 1.36201 * 120.66904 * 264.99947 * 20 19 17 22 22 N 1.32576 * 121.88110 * 180.02562 * 21 20 19 23 23 C 1.31270 * 122.77285 * 359.97438 * 22 21 20 24 24 C 1.40390 * 119.88240 * 0.02562 * 23 22 21 25 25 C 1.40380 * 122.07699 * 179.97438 * 24 23 22 26 26 C 1.36169 * 119.51459 * 180.02562 * 25 24 23 27 27 C 1.39378 * 121.08761 * 359.97438 * 26 25 24 28 28 C 1.36211 * 121.02825 * 359.97438 * 27 26 25 29 29 C 1.40235 * 119.48084 * 359.76427 * 28 27 26 30 30 C 1.47431 * 125.64997 * 190.05514 * 9 7 2 31 31 H 0.96997 * 119.99844 * 182.97700 * 1 2 3 32 32 H 1.09003 * 109.88013 * 298.38623 * 10 9 7 33 33 H 1.08998 * 109.88605 * 59.55597 * 10 9 7 34 34 H 0.96698 * 113.99896 * 293.78138 * 13 11 10 35 35 H 0.96998 * 119.99951 * 341.32890 * 16 14 11 36 36 H 1.09001 * 109.46676 * 300.00018 * 19 17 16 37 37 H 1.09004 * 109.47314 * 59.99417 * 19 17 16 38 38 H 1.08007 * 119.06024 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.06206 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.24458 * 359.97438 * 25 24 23 41 41 H 1.08005 * 119.45457 * 179.97438 * 26 25 24 42 42 H 1.07999 * 119.48539 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.26058 * 180.02562 * 28 27 26 44 44 H 1.08995 * 110.36770 * 322.93305 * 30 9 7 45 45 H 1.09003 * 110.36232 * 85.26007 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.2019 1.6399 -1.1397 5 1 3.0003 1.7562 1.2740 6 1 1.2907 2.7432 -0.1343 7 6 2.0103 -1.2021 -0.0005 8 1 1.4984 -2.1211 -0.2452 9 7 3.3440 -1.2228 0.3091 10 6 4.1150 -0.0951 0.8526 11 6 5.5606 -0.5905 1.0689 12 1 6.1882 -0.3199 0.2198 13 8 6.1042 -0.0695 2.2835 14 6 5.3927 -2.1304 1.1587 15 1 5.0991 -2.4334 2.1637 16 7 6.6175 -2.8181 0.7425 17 6 6.8207 -4.1035 1.0930 18 8 5.9900 -4.6908 1.7531 19 6 8.0808 -4.8109 0.6655 20 6 8.0627 -6.2262 1.1828 21 6 8.6746 -6.5445 2.3572 22 7 8.6739 -7.7814 2.8343 23 6 8.0889 -8.7810 2.2165 24 6 7.4291 -8.5598 0.9972 25 6 6.7889 -9.5948 0.2974 26 6 6.1649 -9.3216 -0.8816 27 6 6.1504 -8.0302 -1.4058 28 6 6.7599 -7.0010 -0.7542 29 6 7.4080 -7.2437 0.4656 30 6 4.2459 -2.3777 0.1470 31 1 -0.4850 -0.8389 0.0436 32 1 4.1073 0.7343 0.1453 33 1 3.6876 0.2221 1.8038 34 1 6.2290 0.8894 2.2791 35 1 7.2820 -2.3483 0.2148 36 1 8.1397 -4.8221 -0.4229 37 1 8.9468 -4.2873 1.0708 38 1 9.1753 -5.7672 2.9154 39 1 8.1150 -9.7719 2.6454 40 1 6.7921 -10.6007 0.6909 41 1 5.6731 -10.1187 -1.4194 42 1 5.6480 -7.8427 -2.3432 43 1 6.7407 -6.0051 -1.1715 44 1 3.7230 -3.3038 0.3853 45 1 4.6379 -2.4130 -0.8695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077166921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:06 Heat of formation + Delta-G solvation = 10.970802 kcal Electronic energy + Delta-G solvation = -29161.227063 eV Core-core repulsion = 25144.790448 eV Total energy + Delta-G solvation = -4016.436615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.22865 -39.79922 -38.26556 -37.50682 -35.44348 -34.40663 -34.20049 -32.06467 -31.41240 -30.61405 -29.17081 -28.14606 -27.42608 -24.32499 -23.87534 -23.70021 -21.99517 -21.19960 -20.50758 -20.23514 -18.19432 -17.83616 -17.71521 -17.39832 -16.88541 -16.66794 -16.29514 -15.35172 -15.00182 -14.90285 -14.67506 -14.46808 -14.34346 -13.95431 -13.78016 -13.55598 -13.46128 -13.00297 -12.92038 -12.83722 -12.66786 -12.36072 -12.31370 -11.99830 -11.90717 -11.65505 -11.28069 -11.21720 -10.62232 -10.45847 -10.34255 -10.01021 -9.81207 -9.65709 -9.34872 -9.26304 -9.10517 -9.04258 -8.71252 -8.22937 -7.14547 -6.37530 -3.29209 0.13623 0.72464 1.68778 2.63157 2.83945 3.13594 3.31132 3.39212 3.63306 3.89473 4.09210 4.19461 4.30949 4.46367 4.50797 4.54809 4.65089 4.67771 4.74616 4.83081 4.88557 4.97101 5.04565 5.15289 5.17851 5.22357 5.26834 5.36778 5.41085 5.53476 5.64351 5.76155 5.76651 5.79965 5.84240 6.12421 6.16331 6.23736 6.30685 6.40653 6.44396 6.52352 6.61678 6.66308 7.49524 7.55856 7.71415 7.78562 8.23658 8.27303 8.97347 9.47064 10.12010 11.13581 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.002783 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.793714 B =10059.217096 C =11193.882814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.022 4.022 3 Si 1.072 2.928 4 H -0.298 1.298 5 H -0.286 1.286 6 H -0.299 1.299 7 C -0.324 4.324 8 H 0.081 0.919 9 N -0.606 5.606 10 C 0.083 3.917 11 C 0.086 3.914 12 H 0.068 0.932 13 O -0.558 6.558 14 C 0.141 3.859 15 H 0.106 0.894 16 N -0.717 5.717 17 C 0.513 3.487 18 O -0.524 6.524 19 C -0.099 4.099 20 C -0.097 4.097 21 C 0.088 3.912 22 N -0.486 5.486 23 C 0.142 3.858 24 C -0.112 4.112 25 C -0.088 4.088 26 C -0.120 4.120 27 C -0.097 4.097 28 C -0.108 4.108 29 C -0.007 4.007 30 C 0.131 3.869 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.061 0.939 34 H 0.378 0.622 35 H 0.398 0.602 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.151 0.849 39 H 0.162 0.838 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.056 0.944 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.828 -13.691 -2.098 25.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.222 4.222 3 Si 0.907 3.093 4 H -0.227 1.227 5 H -0.214 1.214 6 H -0.227 1.227 7 C -0.451 4.451 8 H 0.099 0.901 9 N -0.335 5.335 10 C -0.043 4.043 11 C 0.027 3.973 12 H 0.086 0.914 13 O -0.363 6.363 14 C 0.036 3.964 15 H 0.124 0.876 16 N -0.368 5.368 17 C 0.298 3.702 18 O -0.399 6.399 19 C -0.140 4.140 20 C -0.099 4.099 21 C -0.055 4.055 22 N -0.192 5.192 23 C -0.029 4.029 24 C -0.114 4.114 25 C -0.108 4.108 26 C -0.138 4.138 27 C -0.116 4.116 28 C -0.126 4.126 29 C -0.012 4.012 30 C 0.004 3.996 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.226 0.774 35 H 0.232 0.768 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.168 0.832 39 H 0.179 0.821 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.075 0.925 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 21.362 -13.124 -0.677 25.080 hybrid contribution -0.028 -0.576 -1.334 1.454 sum 21.334 -13.700 -2.012 25.434 Atomic orbital electron populations 1.70888 1.05644 1.29258 1.50835 1.25859 0.96533 1.00921 0.98852 0.83809 0.73332 0.76238 0.75971 1.22730 1.21381 1.22741 1.20192 0.81697 0.96336 1.46907 0.90148 1.44595 1.06291 1.07268 1.75306 1.22687 0.90554 0.92513 0.98503 1.23043 0.94322 0.93437 0.86547 0.91424 1.86524 1.85538 1.26906 1.37289 1.22212 0.84247 0.89215 1.00757 0.87646 1.45856 1.22351 1.12442 1.56201 1.20380 0.87904 0.81751 0.80121 1.90774 1.45724 1.65410 1.37946 1.20597 0.97752 0.92356 1.03303 1.19977 0.99073 0.94162 0.96682 1.22000 0.97408 0.93514 0.92628 1.67416 1.17936 1.00193 1.33701 1.23165 0.91372 0.98181 0.90195 1.19006 1.01235 0.93808 0.97376 1.20969 0.96597 0.98338 0.94893 1.20936 0.99526 0.97019 0.96337 1.21014 0.97780 0.92784 1.00002 1.20966 0.97842 0.99642 0.94124 1.17953 0.96057 0.92417 0.94746 1.21863 0.89946 0.92707 0.95079 0.92705 0.94825 0.92157 0.77435 0.76768 0.87611 0.87341 0.83190 0.82061 0.84959 0.85559 0.85468 0.85390 0.92542 0.95463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.18 13.71 55.49 0.76 -28.41 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.75 16 3 Si 1.07 26.21 24.52 -169.99 -4.17 22.05 16 4 H -0.30 -6.90 6.82 56.52 0.39 -6.51 16 5 H -0.29 -6.32 5.41 56.52 0.31 -6.02 16 6 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 7 C -0.32 -9.38 10.56 -15.06 -0.16 -9.53 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 9 N -0.61 -14.88 3.33 -170.06 -0.57 -15.44 16 10 C 0.08 1.75 4.40 -3.06 -0.01 1.74 16 11 C 0.09 1.39 3.94 -24.89 -0.10 1.29 16 12 H 0.07 0.90 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -8.20 13.40 -35.23 -0.47 -8.67 16 14 C 0.14 2.43 3.04 -65.78 -0.20 2.23 16 15 H 0.11 2.13 7.73 -51.93 -0.40 1.73 16 16 N -0.72 -9.20 5.23 -51.73 -0.27 -9.47 16 17 C 0.51 7.00 7.82 -10.99 -0.09 6.92 16 18 O -0.52 -9.79 15.78 5.56 0.09 -9.71 16 19 C -0.10 -0.92 5.31 -29.04 -0.15 -1.08 16 20 C -0.10 -1.13 4.40 -104.44 -0.46 -1.59 16 21 C 0.09 1.05 10.72 -17.96 -0.19 0.86 16 22 N -0.49 -6.10 10.30 -13.16 -0.14 -6.23 16 23 C 0.14 1.52 11.05 -16.98 -0.19 1.34 16 24 C -0.11 -1.26 5.74 -106.86 -0.61 -1.87 16 25 C -0.09 -0.78 9.81 -39.52 -0.39 -1.17 16 26 C -0.12 -1.04 9.94 -39.90 -0.40 -1.44 16 27 C -0.10 -0.93 9.95 -39.89 -0.40 -1.33 16 28 C -0.11 -1.19 9.33 -39.56 -0.37 -1.56 16 29 C -0.01 -0.08 5.75 -106.81 -0.61 -0.69 16 30 C 0.13 2.70 6.93 -2.53 -0.02 2.68 16 31 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 32 H 0.03 0.73 3.89 -51.93 -0.20 0.53 16 33 H 0.06 1.37 6.62 -51.93 -0.34 1.03 16 34 H 0.38 3.85 9.12 45.56 0.42 4.27 16 35 H 0.40 3.64 8.52 -40.82 -0.35 3.30 16 36 H 0.11 0.73 6.84 -51.93 -0.36 0.38 16 37 H 0.11 0.69 8.06 -51.93 -0.42 0.28 16 38 H 0.15 1.48 8.05 -52.48 -0.42 1.05 16 39 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.27 6.65 -52.49 -0.35 0.92 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -38.40 368.55 -8.72 -47.12 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.06 Total: 7.17 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -4.44 Total: -3.95 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.21 Total: -59.56 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.38 Total: -18.38 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.17 Total: 22.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -38.40 -8.72 -47.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077166921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.089 kcal (2) G-P(sol) polarization free energy of solvation -38.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds