Wall clock time and date at job start Sat Apr 11 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99899 * 2 1 4 4 H 1.48505 * 109.47219 * 234.49261 * 3 2 1 5 5 H 1.48498 * 109.47210 * 114.49464 * 3 2 1 6 6 H 1.48497 * 109.47206 * 354.49366 * 3 2 1 7 7 C 1.38809 * 120.00398 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00101 * 15.13609 * 7 2 1 9 9 N 1.36937 * 120.00423 * 195.13821 * 7 2 1 10 10 C 1.47022 * 125.64503 * 9.75579 * 9 7 2 11 11 C 1.54333 * 107.26472 * 178.84822 * 10 9 7 12 12 H 1.09000 * 110.51773 * 96.44490 * 11 10 9 13 13 O 1.42905 * 111.00317 * 219.59862 * 11 10 9 14 14 C 1.55165 * 103.02173 * 338.13783 * 11 10 9 15 15 H 1.08996 * 110.99848 * 277.23442 * 14 11 10 16 16 N 1.46498 * 111.03597 * 153.39707 * 14 11 10 17 17 C 1.34774 * 119.99484 * 161.33257 * 16 14 11 18 18 O 1.21277 * 120.00566 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00029 * 180.02562 * 17 16 14 20 20 C 1.50699 * 109.47530 * 179.97438 * 19 17 16 21 21 C 1.36201 * 120.66904 * 264.99947 * 20 19 17 22 22 N 1.32576 * 121.88110 * 180.02562 * 21 20 19 23 23 C 1.31270 * 122.77285 * 359.97438 * 22 21 20 24 24 C 1.40390 * 119.88240 * 0.02562 * 23 22 21 25 25 C 1.40380 * 122.07699 * 179.97438 * 24 23 22 26 26 C 1.36169 * 119.51459 * 180.02562 * 25 24 23 27 27 C 1.39378 * 121.08761 * 359.97438 * 26 25 24 28 28 C 1.36211 * 121.02825 * 359.97438 * 27 26 25 29 29 C 1.40235 * 119.48084 * 359.76427 * 28 27 26 30 30 C 1.47431 * 125.64997 * 190.05514 * 9 7 2 31 31 H 0.96997 * 119.99844 * 182.97700 * 1 2 3 32 32 H 1.09003 * 109.88013 * 298.38623 * 10 9 7 33 33 H 1.08998 * 109.88605 * 59.55597 * 10 9 7 34 34 H 0.96698 * 113.99896 * 293.78138 * 13 11 10 35 35 H 0.96998 * 119.99951 * 341.32890 * 16 14 11 36 36 H 1.09001 * 109.46676 * 300.00018 * 19 17 16 37 37 H 1.09004 * 109.47314 * 59.99417 * 19 17 16 38 38 H 1.08007 * 119.06024 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.06206 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.24458 * 359.97438 * 25 24 23 41 41 H 1.08005 * 119.45457 * 179.97438 * 26 25 24 42 42 H 1.07999 * 119.48539 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.26058 * 180.02562 * 28 27 26 44 44 H 1.08995 * 110.36770 * 322.93305 * 30 9 7 45 45 H 1.09003 * 110.36232 * 85.26007 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.2019 1.6399 -1.1397 5 1 3.0003 1.7562 1.2740 6 1 1.2907 2.7432 -0.1343 7 6 2.0103 -1.2021 -0.0005 8 1 1.4984 -2.1211 -0.2452 9 7 3.3440 -1.2228 0.3091 10 6 4.1150 -0.0951 0.8526 11 6 5.5606 -0.5905 1.0689 12 1 6.1882 -0.3199 0.2198 13 8 6.1042 -0.0695 2.2835 14 6 5.3927 -2.1304 1.1587 15 1 5.0991 -2.4334 2.1637 16 7 6.6175 -2.8181 0.7425 17 6 6.8207 -4.1035 1.0930 18 8 5.9900 -4.6908 1.7531 19 6 8.0808 -4.8109 0.6655 20 6 8.0627 -6.2262 1.1828 21 6 8.6746 -6.5445 2.3572 22 7 8.6739 -7.7814 2.8343 23 6 8.0889 -8.7810 2.2165 24 6 7.4291 -8.5598 0.9972 25 6 6.7889 -9.5948 0.2974 26 6 6.1649 -9.3216 -0.8816 27 6 6.1504 -8.0302 -1.4058 28 6 6.7599 -7.0010 -0.7542 29 6 7.4080 -7.2437 0.4656 30 6 4.2459 -2.3777 0.1470 31 1 -0.4850 -0.8389 0.0436 32 1 4.1073 0.7343 0.1453 33 1 3.6876 0.2221 1.8038 34 1 6.2290 0.8894 2.2791 35 1 7.2820 -2.3483 0.2148 36 1 8.1397 -4.8221 -0.4229 37 1 8.9468 -4.2873 1.0708 38 1 9.1753 -5.7672 2.9154 39 1 8.1150 -9.7719 2.6454 40 1 6.7921 -10.6007 0.6909 41 1 5.6731 -10.1187 -1.4194 42 1 5.6480 -7.8427 -2.3432 43 1 6.7407 -6.0051 -1.1715 44 1 3.7230 -3.3038 0.3853 45 1 4.6379 -2.4130 -0.8695 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077166921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:05 Heat of formation + Delta-G solvation = -20.688443 kcal Electronic energy + Delta-G solvation = -29162.599911 eV Core-core repulsion = 25144.790448 eV Total energy + Delta-G solvation = -4017.809463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.03349 -41.00373 -39.62063 -38.25964 -36.86851 -35.69636 -35.15579 -34.06551 -32.17642 -31.46313 -30.56734 -29.62161 -28.59056 -25.85537 -24.89029 -24.50614 -22.96855 -22.85779 -21.89981 -21.37454 -19.77540 -18.92784 -18.62128 -18.56354 -18.04460 -17.87583 -17.31482 -16.60066 -16.25517 -16.10565 -15.73088 -15.56525 -15.32490 -15.28201 -14.77083 -14.69778 -14.55692 -14.47791 -14.34655 -14.26576 -13.74760 -13.50462 -13.38872 -13.09965 -13.08872 -12.87719 -12.67350 -12.29419 -12.12119 -11.97834 -11.51512 -11.34059 -11.24263 -11.08430 -10.86557 -10.64316 -10.47815 -10.22801 -10.03689 -9.20509 -8.99343 -8.73472 -5.56537 -0.62216 -0.06122 0.91686 1.35955 1.48892 1.57884 1.70507 1.96849 2.17109 2.53825 2.89146 3.05994 3.10146 3.29288 3.35758 3.57057 3.57681 3.73677 3.76542 3.78053 3.87837 3.94891 3.97794 4.09582 4.19513 4.23103 4.31296 4.36252 4.39079 4.54680 4.56258 4.66384 4.71844 4.79231 4.89897 4.91916 4.94284 5.08879 5.12705 5.33355 5.44995 5.46691 5.48803 5.66009 5.91566 6.00041 6.51144 6.72858 6.81429 6.97779 7.23335 7.32858 7.96513 8.79338 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.002783 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.793714 B =10059.217096 C =11193.882814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.082 4.082 3 Si 1.113 2.887 4 H -0.269 1.269 5 H -0.247 1.247 6 H -0.312 1.312 7 C -0.321 4.321 8 H 0.039 0.961 9 N -0.628 5.628 10 C 0.071 3.929 11 C 0.110 3.890 12 H 0.116 0.884 13 O -0.563 6.563 14 C 0.154 3.846 15 H 0.069 0.931 16 N -0.699 5.699 17 C 0.513 3.487 18 O -0.581 6.581 19 C -0.087 4.087 20 C -0.110 4.110 21 C 0.070 3.930 22 N -0.513 5.513 23 C 0.139 3.861 24 C -0.134 4.134 25 C -0.088 4.088 26 C -0.127 4.127 27 C -0.102 4.102 28 C -0.131 4.131 29 C -0.031 4.031 30 C 0.132 3.868 31 H 0.246 0.754 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.402 0.598 35 H 0.422 0.578 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.191 0.809 40 H 0.163 0.837 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.021 0.979 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.558 -12.984 -2.989 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.274 4.274 3 Si 0.939 3.061 4 H -0.196 1.196 5 H -0.172 1.172 6 H -0.241 1.241 7 C -0.449 4.449 8 H 0.057 0.943 9 N -0.357 5.357 10 C -0.054 4.054 11 C 0.049 3.951 12 H 0.134 0.866 13 O -0.371 6.371 14 C 0.047 3.953 15 H 0.087 0.913 16 N -0.352 5.352 17 C 0.301 3.699 18 O -0.460 6.460 19 C -0.127 4.127 20 C -0.113 4.113 21 C -0.073 4.073 22 N -0.221 5.221 23 C -0.032 4.032 24 C -0.136 4.136 25 C -0.107 4.107 26 C -0.145 4.145 27 C -0.121 4.121 28 C -0.149 4.149 29 C -0.036 4.036 30 C 0.005 3.995 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.253 0.747 35 H 0.261 0.739 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.181 0.819 39 H 0.208 0.792 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.039 0.961 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.187 -12.416 -1.581 28.126 hybrid contribution -1.265 -0.997 -1.051 1.924 sum 23.922 -13.414 -2.632 27.552 Atomic orbital electron populations 1.71016 1.07103 1.28275 1.53977 1.27426 0.96472 1.05035 0.98443 0.83407 0.72923 0.71023 0.78778 1.19560 1.17193 1.24104 1.20041 0.84215 0.94898 1.45785 0.94281 1.44590 1.05540 1.09883 1.75666 1.22924 0.93242 0.91826 0.97392 1.22833 0.91915 0.91585 0.88722 0.86610 1.86498 1.84784 1.29235 1.36631 1.21656 0.84876 0.91085 0.97722 0.91292 1.45604 1.21201 1.12278 1.56111 1.21176 0.88521 0.81506 0.78725 1.90763 1.47989 1.66655 1.40561 1.20647 0.96225 0.90784 1.05049 1.20213 0.99082 0.95242 0.96733 1.22319 0.97996 0.93888 0.93074 1.67430 1.19167 1.00895 1.34576 1.23687 0.90423 0.99071 0.90035 1.19344 1.01945 0.94332 0.97969 1.21361 0.95475 0.99233 0.94671 1.21317 0.99286 0.97396 0.96461 1.21374 0.97068 0.93094 1.00526 1.21140 0.98895 1.00452 0.94387 1.18310 0.96599 0.93273 0.95442 1.21932 0.90345 0.90029 0.97182 0.94550 0.93572 0.94108 0.74679 0.73911 0.84792 0.83687 0.81870 0.79174 0.81919 0.82820 0.83800 0.84872 0.96078 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.02 13.71 21.65 0.30 -62.73 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 3 Si 1.11 51.70 24.52 68.60 1.68 53.39 16 4 H -0.27 -11.15 6.82 99.48 0.68 -10.47 16 5 H -0.25 -9.90 5.41 99.48 0.54 -9.36 16 6 H -0.31 -15.07 7.11 99.48 0.71 -14.36 16 7 C -0.32 -19.26 10.56 84.03 0.89 -18.37 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 9 N -0.63 -30.85 3.33 -691.96 -2.30 -33.15 16 10 C 0.07 2.81 4.40 86.73 0.38 3.20 16 11 C 0.11 3.08 3.94 31.79 0.13 3.21 16 12 H 0.12 2.27 8.00 -2.39 -0.02 2.25 16 13 O -0.56 -14.11 13.40 -148.98 -2.00 -16.11 16 14 C 0.15 5.06 3.04 46.39 0.14 5.20 16 15 H 0.07 2.82 7.73 -2.39 -0.02 2.80 16 16 N -0.70 -15.95 5.23 -435.97 -2.28 -18.23 16 17 C 0.51 13.25 7.82 87.66 0.69 13.94 16 18 O -0.58 -22.14 15.78 -3.02 -0.05 -22.19 16 19 C -0.09 -1.40 5.31 29.10 0.15 -1.25 16 20 C -0.11 -2.49 4.40 -19.75 -0.09 -2.57 16 21 C 0.07 1.64 10.72 84.11 0.90 2.54 16 22 N -0.51 -12.78 10.30 -195.54 -2.01 -14.79 16 23 C 0.14 2.89 11.05 85.30 0.94 3.83 16 24 C -0.13 -2.91 5.74 -21.31 -0.12 -3.04 16 25 C -0.09 -1.42 9.81 22.31 0.22 -1.20 16 26 C -0.13 -1.98 9.94 22.06 0.22 -1.76 16 27 C -0.10 -1.85 9.95 22.07 0.22 -1.63 16 28 C -0.13 -2.81 9.33 22.28 0.21 -2.61 16 29 C -0.03 -0.75 5.75 -21.28 -0.12 -0.87 16 30 C 0.13 5.41 6.93 86.85 0.60 6.01 16 31 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 32 H 0.05 1.77 3.89 -2.39 -0.01 1.76 16 33 H 0.04 1.77 6.62 -2.39 -0.02 1.76 16 34 H 0.40 6.05 9.12 -74.06 -0.68 5.37 16 35 H 0.42 5.65 8.52 -92.71 -0.79 4.86 16 36 H 0.13 1.40 6.84 -2.39 -0.02 1.39 16 37 H 0.15 1.27 8.06 -2.39 -0.02 1.25 16 38 H 0.16 3.08 8.05 -2.91 -0.02 3.06 16 39 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 43 H 0.13 2.52 6.65 -2.91 -0.02 2.50 16 44 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -91.14 368.55 -1.49 -92.62 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.65 Total: 21.01 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.82 Total: 0.18 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -6.30 Total: -128.91 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -2.04 Total: -38.29 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 1.68 Total: 53.39 kcal Total: -91.14 -1.49 -92.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077166921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.936 kcal (2) G-P(sol) polarization free energy of solvation -91.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds