Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99575 * 2 1 4 4 H 1.48498 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47117 * 300.00460 * 3 2 1 6 6 H 1.48508 * 109.47165 * 60.00016 * 3 2 1 7 7 C 1.38805 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00364 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64657 * 359.97339 * 9 7 2 11 11 C 1.54329 * 107.26880 * 178.99717 * 10 9 7 12 12 H 1.09008 * 110.71846 * 96.17123 * 11 10 9 13 13 O 1.42902 * 110.87225 * 219.37122 * 11 10 9 14 14 C 1.55158 * 102.94366 * 337.80990 * 11 10 9 15 15 H 1.08997 * 110.99908 * 277.38942 * 14 11 10 16 16 N 1.46497 * 111.00453 * 153.57574 * 14 11 10 17 17 C 1.34770 * 119.99928 * 158.17560 * 16 14 11 18 18 O 1.21288 * 120.00233 * 0.02562 * 17 16 14 19 19 C 1.50699 * 120.00144 * 179.97438 * 17 16 14 20 20 C 1.50703 * 109.47280 * 180.02562 * 19 17 16 21 21 C 1.36249 * 120.25697 * 264.99705 * 20 19 17 22 22 C 1.39341 * 121.01479 * 179.72070 * 21 20 19 23 23 C 1.36206 * 121.08439 * 0.28352 * 22 21 20 24 24 C 1.40330 * 119.52017 * 359.97438 * 23 22 21 25 25 C 1.40438 * 122.09073 * 180.02562 * 24 23 22 26 26 N 1.31233 * 119.88135 * 179.97438 * 25 24 23 27 27 C 1.32609 * 122.78667 * 359.97438 * 26 25 24 28 28 C 1.36173 * 121.87727 * 359.97438 * 27 26 25 29 29 C 1.40189 * 120.26092 * 85.27195 * 20 19 17 30 30 C 1.47469 * 125.62788 * 180.02562 * 9 7 2 31 31 H 0.96992 * 120.00051 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.88418 * 59.58187 * 10 9 7 33 33 H 1.09003 * 110.01295 * 298.48383 * 10 9 7 34 34 H 0.96699 * 113.99969 * 293.61329 * 13 11 10 35 35 H 0.97000 * 119.99811 * 338.18220 * 16 14 11 36 36 H 1.08999 * 109.47228 * 60.00279 * 19 17 16 37 37 H 1.09000 * 109.47167 * 300.00337 * 19 17 16 38 38 H 1.08002 * 119.49629 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.45175 * 180.25487 * 22 21 20 40 40 H 1.08004 * 120.23845 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.05362 * 359.94787 * 25 24 23 42 42 H 1.07998 * 119.06042 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.66025 * 179.97438 * 28 27 26 44 44 H 1.08996 * 110.34984 * 85.23247 * 30 9 7 45 45 H 1.09001 * 110.40729 * 322.89251 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8913 2.3966 1.2126 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0016 10 6 -0.1372 -2.5328 -0.0017 11 6 -0.4480 -4.0442 -0.0289 12 1 -0.6313 -4.4184 0.9785 13 8 -1.5631 -4.3195 -0.8791 14 6 0.8525 -4.6560 -0.6135 15 1 0.8571 -4.5965 -1.7019 16 7 1.0297 -6.0394 -0.1652 17 6 1.8122 -6.8809 -0.8694 18 8 2.3701 -6.4928 -1.8740 19 6 1.9951 -8.3038 -0.4080 20 6 2.9096 -9.0278 -1.3622 21 6 2.3910 -9.7696 -2.3807 22 6 3.2220 -10.4407 -3.2755 23 6 4.5775 -10.3808 -3.1567 24 6 5.1480 -9.6309 -2.1168 25 6 6.5382 -9.5317 -1.9441 26 7 7.0251 -8.8178 -0.9565 27 6 6.2564 -8.1690 -0.0923 28 6 4.8975 -8.2007 -0.1738 29 6 4.3004 -8.9480 -1.2055 30 6 1.9345 -3.7312 -0.0017 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5573 -2.0521 -0.8852 33 1 -0.5566 -2.0843 0.8989 34 1 -2.4009 -3.9585 -0.5583 35 1 0.5838 -6.3497 0.6383 36 1 1.0272 -8.8044 -0.3815 37 1 2.4340 -8.3087 0.5897 38 1 1.3195 -9.8344 -2.4992 39 1 2.7839 -11.0181 -4.0761 40 1 5.2087 -10.9067 -3.8577 41 1 7.2053 -10.0424 -2.6228 42 1 6.7214 -7.5993 0.6986 43 1 4.2903 -7.6652 0.5410 44 1 2.1675 -4.0419 1.0167 45 1 2.8339 -3.7409 -0.6174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077230633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = 0.948234 kcal Electronic energy + Delta-G solvation = -29041.733922 eV Core-core repulsion = 25024.862696 eV Total energy + Delta-G solvation = -4016.871226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.14501 -39.66504 -38.03663 -37.38567 -35.11255 -34.09813 -33.99413 -31.81799 -31.46371 -30.69234 -28.76083 -27.79622 -26.70800 -24.48227 -24.25886 -23.74890 -21.88616 -20.66453 -20.39023 -20.03374 -18.20764 -17.44684 -17.22835 -17.01116 -16.89667 -16.52373 -15.78751 -15.26611 -14.85386 -14.77082 -14.49090 -14.36978 -14.08916 -13.91967 -13.83631 -13.47853 -13.17753 -12.87871 -12.71400 -12.60797 -12.25914 -12.14704 -12.07173 -11.84429 -11.50834 -11.28886 -11.19583 -10.90638 -10.84427 -10.30567 -10.15429 -9.94547 -9.87439 -9.81628 -9.63140 -9.35995 -9.19741 -8.87040 -8.65825 -8.17539 -6.94045 -5.78692 -3.13286 0.18742 0.76795 1.73537 2.73927 2.84665 3.31527 3.37856 3.43854 3.46208 3.94737 4.17101 4.30615 4.41445 4.47108 4.58093 4.59087 4.70017 4.81254 4.88059 4.94459 5.05425 5.15020 5.16862 5.21026 5.41141 5.47017 5.54119 5.61056 5.61276 5.64037 5.78224 5.83388 5.87164 6.04451 6.09764 6.17482 6.29501 6.46887 6.47898 6.58570 6.65421 6.84741 7.29048 7.43919 7.63286 7.71864 7.83505 8.07195 8.14774 8.36546 9.12872 9.72809 10.35438 11.33162 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.002737 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.167809 B =10229.408822 C =11601.990829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.103 0.897 16 N -0.716 5.716 17 C 0.512 3.488 18 O -0.527 6.527 19 C -0.106 4.106 20 C -0.053 4.053 21 C -0.088 4.088 22 C -0.115 4.115 23 C -0.090 4.090 24 C -0.112 4.112 25 C 0.143 3.857 26 N -0.490 5.490 27 C 0.075 3.925 28 C -0.148 4.148 29 C -0.007 4.007 30 C 0.131 3.869 31 H 0.253 0.747 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.376 0.624 35 H 0.397 0.603 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.135 0.865 44 H 0.023 0.977 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 -23.754 0.093 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.121 0.879 16 N -0.367 5.367 17 C 0.297 3.703 18 O -0.402 6.402 19 C -0.146 4.146 20 C -0.054 4.054 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.029 4.029 26 N -0.197 5.197 27 C -0.067 4.067 28 C -0.168 4.168 29 C -0.012 4.012 30 C 0.003 3.997 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.223 0.777 35 H 0.231 0.769 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.179 0.821 42 H 0.170 0.830 43 H 0.153 0.847 44 H 0.041 0.959 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.328 -23.369 -0.757 23.779 hybrid contribution -1.298 1.138 0.673 1.853 sum 3.030 -22.231 -0.084 22.437 Atomic orbital electron populations 1.69929 1.04933 1.25118 1.57172 1.24816 0.95789 0.97798 1.01967 0.85996 0.78802 0.83430 0.77258 1.20384 1.21628 1.21695 1.19141 0.90596 0.82058 1.43830 0.90089 1.44260 1.01185 0.99909 1.87417 1.21810 0.85421 0.87776 1.02187 1.23458 0.85521 0.98584 0.91593 0.92497 1.86465 1.18729 1.79872 1.51772 1.22251 0.94443 0.79018 1.00894 0.87929 1.45925 1.49720 1.11893 1.29147 1.20354 0.79085 0.86830 0.84007 1.90764 1.46766 1.77597 1.25064 1.20707 1.00840 0.93262 0.99762 1.19024 0.92005 0.97362 0.96968 1.20840 1.00306 0.95968 0.93618 1.20867 0.93633 0.99674 0.99149 1.20950 0.95426 0.97923 0.96696 1.18992 0.95049 1.00141 0.97179 1.23168 0.91546 0.93961 0.94210 1.67401 1.41169 1.07421 1.03741 1.22165 0.90625 0.96707 0.97238 1.21905 0.96565 0.99490 0.98804 1.17932 0.93045 0.95646 0.94607 1.21848 0.94893 0.85738 0.97187 0.93692 0.92139 0.93286 0.77658 0.76934 0.87557 0.87758 0.85587 0.85494 0.85005 0.82112 0.82982 0.84720 0.95922 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.71 10.31 55.49 0.57 -26.14 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.31 3.40 -170.02 -0.58 -15.89 16 10 C 0.15 3.61 5.15 -3.06 -0.02 3.59 16 11 C 0.07 1.23 3.96 -24.89 -0.10 1.13 16 12 H 0.06 0.88 8.00 -51.92 -0.42 0.47 16 13 O -0.56 -9.48 13.40 -35.23 -0.47 -9.95 16 14 C 0.14 2.57 3.09 -65.77 -0.20 2.37 16 15 H 0.10 2.23 7.63 -51.93 -0.40 1.83 16 16 N -0.72 -9.92 5.21 -51.72 -0.27 -10.19 16 17 C 0.51 7.31 7.82 -10.99 -0.09 7.22 16 18 O -0.53 -10.08 15.73 5.55 0.09 -9.99 16 19 C -0.11 -1.02 5.29 -29.03 -0.15 -1.18 16 20 C -0.05 -0.60 4.38 -104.60 -0.46 -1.06 16 21 C -0.09 -0.89 9.58 -39.89 -0.38 -1.27 16 22 C -0.12 -1.03 9.94 -39.90 -0.40 -1.43 16 23 C -0.09 -0.82 9.81 -39.53 -0.39 -1.21 16 24 C -0.11 -1.27 5.74 -106.86 -0.61 -1.88 16 25 C 0.14 1.55 11.05 -16.98 -0.19 1.36 16 26 N -0.49 -6.21 10.30 -13.15 -0.14 -6.34 16 27 C 0.08 0.90 11.07 -17.96 -0.20 0.71 16 28 C -0.15 -1.77 9.36 -39.40 -0.37 -2.14 16 29 C -0.01 -0.09 5.75 -106.81 -0.61 -0.70 16 30 C 0.13 2.78 6.93 -2.49 -0.02 2.76 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.61 7.30 -51.93 -0.38 1.23 16 33 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 34 H 0.38 4.76 9.12 45.56 0.42 5.18 16 35 H 0.40 4.12 8.54 -40.82 -0.35 3.77 16 36 H 0.11 0.73 8.05 -51.93 -0.42 0.32 16 37 H 0.10 0.78 6.78 -51.93 -0.35 0.43 16 38 H 0.13 1.02 8.05 -52.49 -0.42 0.60 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 41 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 42 H 0.15 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.14 1.40 6.64 -52.49 -0.35 1.06 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -36.46 376.16 -9.72 -46.18 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.14 Total: 8.13 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -4.43 Total: 1.41 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.41 Total: -58.56 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.38 Total: -19.95 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.46 -9.72 -46.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077230633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.132 kcal (2) G-P(sol) polarization free energy of solvation -36.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds