Wall clock time and date at job start Sat Apr 11 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86792 * 119.99875 * 2 1 4 4 H 1.48500 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47142 * 60.00769 * 3 2 1 6 6 H 1.48508 * 109.47417 * 300.00651 * 3 2 1 7 7 C 1.38810 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 34.47219 * 7 2 1 9 9 N 1.36936 * 119.99782 * 214.47366 * 7 2 1 10 10 C 1.47024 * 125.64802 * 25.69915 * 9 7 2 11 11 C 1.54338 * 107.26406 * 178.85276 * 10 9 7 12 12 H 1.08993 * 110.51632 * 96.45399 * 11 10 9 13 13 O 1.42903 * 110.99933 * 219.60129 * 11 10 9 14 14 C 1.55152 * 103.01921 * 338.13863 * 11 10 9 15 15 H 1.09004 * 111.01046 * 277.23399 * 14 11 10 16 16 N 1.46504 * 111.03424 * 153.40002 * 14 11 10 17 17 C 1.34775 * 120.00212 * 161.33736 * 16 14 11 18 18 O 1.21284 * 119.99787 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00325 * 179.97438 * 17 16 14 20 20 C 1.50698 * 109.47226 * 179.97438 * 19 17 16 21 21 C 1.36170 * 120.19738 * 264.99873 * 20 19 17 22 22 C 1.39312 * 120.87041 * 179.97438 * 21 20 19 23 23 C 1.36104 * 121.06893 * 0.02631 * 22 21 20 24 24 C 1.40562 * 119.74831 * 359.97438 * 23 22 21 25 25 N 1.33689 * 121.08156 * 179.97438 * 24 23 22 26 26 C 1.31076 * 121.32041 * 180.02562 * 25 24 23 27 27 C 1.39337 * 121.75185 * 0.02562 * 26 25 24 28 28 C 1.36572 * 119.94451 * 359.97438 * 27 26 25 29 29 C 1.40391 * 120.18962 * 84.72386 * 20 19 17 30 30 C 1.47425 * 125.64932 * 206.00870 * 9 7 2 31 31 H 0.97000 * 119.99944 * 185.08730 * 1 2 3 32 32 H 1.08994 * 109.88192 * 298.39885 * 10 9 7 33 33 H 1.08998 * 109.88047 * 59.56355 * 10 9 7 34 34 H 0.96697 * 114.00240 * 293.78166 * 13 11 10 35 35 H 0.97004 * 120.00081 * 341.32927 * 16 14 11 36 36 H 1.08996 * 109.47349 * 299.99633 * 19 17 16 37 37 H 1.09001 * 109.47122 * 59.99445 * 19 17 16 38 38 H 1.08004 * 119.56225 * 0.02562 * 21 20 19 39 39 H 1.08001 * 119.46341 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.12744 * 179.97438 * 23 22 21 41 41 H 1.08000 * 119.12578 * 179.97438 * 26 25 24 42 42 H 1.08009 * 120.02697 * 180.02562 * 27 26 25 43 43 H 1.07995 * 120.92871 * 180.02562 * 28 27 26 44 44 H 1.08996 * 110.36742 * 322.93225 * 30 9 7 45 45 H 1.09006 * 110.36515 * 85.25286 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8916 2.3963 1.2126 6 1 1.8913 2.3965 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 1.6125 -2.0551 -0.5303 9 7 3.1993 -1.3066 0.6707 10 6 3.6074 -0.4896 1.8229 11 6 5.0037 -0.9804 2.2607 12 1 5.7825 -0.3544 1.8254 13 8 5.1144 -1.0046 3.6853 14 6 5.0666 -2.4180 1.6807 15 1 4.5691 -3.1281 2.3413 16 7 6.4516 -2.8226 1.4272 17 6 6.7577 -4.1276 1.2872 18 8 5.8864 -4.9672 1.3717 19 6 8.1823 -4.5438 1.0259 20 6 8.2542 -6.0447 0.9114 21 6 8.5768 -6.7998 1.9976 22 6 8.6468 -8.1882 1.9077 23 6 8.3959 -8.8296 0.7337 24 6 8.0597 -8.0848 -0.4099 25 7 7.8086 -8.6872 -1.5767 26 6 7.4951 -7.9973 -2.6462 27 6 7.4084 -6.6068 -2.6224 28 6 7.6527 -5.9283 -1.4626 29 6 7.9835 -6.6729 -0.3146 30 6 4.2847 -2.2525 0.3537 31 1 -0.4850 -0.8367 0.0745 32 1 3.6551 0.5604 1.5344 33 1 2.8977 -0.6199 2.6397 34 1 5.0806 -0.1305 4.0974 35 1 7.1485 -2.1511 1.3599 36 1 8.5284 -4.0912 0.0967 37 1 8.8146 -4.2118 1.8493 38 1 8.7802 -6.3159 2.9416 39 1 8.9043 -8.7650 2.7837 40 1 8.4550 -9.9067 0.6811 41 1 7.2997 -8.5204 -3.5706 42 1 7.1474 -6.0662 -3.5203 43 1 7.5896 -4.8508 -1.4261 44 1 3.8726 -3.2096 0.0343 45 1 4.9330 -1.8406 -0.4198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077372748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:12 Heat of formation + Delta-G solvation = 4.566892 kcal Electronic energy + Delta-G solvation = -29140.427141 eV Core-core repulsion = 25123.712832 eV Total energy + Delta-G solvation = -4016.714309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.16745 -39.80090 -38.25296 -37.24650 -35.37387 -34.30539 -34.16427 -32.16155 -31.48023 -30.70420 -29.08379 -27.95912 -27.14051 -24.43892 -23.93362 -23.76785 -21.76636 -20.92655 -20.40623 -20.15706 -18.34244 -17.74644 -17.34465 -17.30370 -17.15253 -16.81700 -16.20460 -15.24878 -14.83725 -14.75837 -14.66202 -14.47458 -14.25095 -13.91349 -13.75586 -13.42407 -13.36047 -13.14613 -13.01938 -12.80672 -12.64265 -12.27617 -11.89081 -11.80679 -11.74436 -11.61646 -11.41229 -11.13445 -10.84277 -10.65306 -10.42697 -10.06717 -9.84162 -9.67184 -9.53651 -9.36984 -9.01277 -8.91875 -8.40104 -8.35085 -7.09011 -6.45926 -3.33490 0.20922 0.68092 1.80967 2.64538 2.71621 3.19261 3.37557 3.46166 3.58108 3.96109 4.12252 4.21459 4.24389 4.51090 4.55466 4.60635 4.61669 4.75911 4.81625 4.85697 4.93944 5.01642 5.12693 5.14233 5.20325 5.22164 5.33070 5.33543 5.43209 5.63545 5.76231 5.82377 5.83675 5.84941 5.89707 6.17551 6.25766 6.30859 6.36463 6.38403 6.53241 6.59008 6.67513 6.72163 7.51883 7.74276 7.74443 7.79431 8.25735 8.30768 8.92061 9.49702 10.21321 10.96872 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015687 B = 0.002803 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.494810 B = 9987.975136 C =11076.399017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.002 3.998 3 Si 1.036 2.964 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.344 4.344 8 H 0.071 0.929 9 N -0.596 5.596 10 C 0.097 3.903 11 C 0.084 3.916 12 H 0.066 0.934 13 O -0.559 6.559 14 C 0.142 3.858 15 H 0.104 0.896 16 N -0.717 5.717 17 C 0.512 3.488 18 O -0.523 6.523 19 C -0.107 4.107 20 C -0.039 4.039 21 C -0.106 4.106 22 C -0.097 4.097 23 C -0.096 4.096 24 C 0.126 3.874 25 N -0.476 5.476 26 C 0.130 3.870 27 C -0.175 4.175 28 C -0.053 4.053 29 C -0.084 4.084 30 C 0.124 3.876 31 H 0.269 0.731 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.378 0.622 35 H 0.398 0.602 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.054 0.946 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.232 -9.420 1.656 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.202 4.202 3 Si 0.866 3.134 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.223 1.223 7 C -0.471 4.471 8 H 0.089 0.911 9 N -0.324 5.324 10 C -0.029 4.029 11 C 0.024 3.976 12 H 0.084 0.916 13 O -0.364 6.364 14 C 0.037 3.963 15 H 0.122 0.878 16 N -0.369 5.369 17 C 0.298 3.702 18 O -0.398 6.398 19 C -0.147 4.147 20 C -0.041 4.041 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.114 4.114 24 C 0.005 3.995 25 N -0.184 5.184 26 C -0.043 4.043 27 C -0.195 4.195 28 C -0.079 4.079 29 C -0.086 4.086 30 C -0.003 4.003 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.225 0.775 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.176 0.824 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.072 0.928 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 22.402 -10.002 1.565 24.583 hybrid contribution 0.310 0.471 0.041 0.566 sum 22.712 -9.531 1.606 24.683 Atomic orbital electron populations 1.70845 1.06729 1.29972 1.45764 1.26067 0.95978 1.00750 0.97396 0.84288 0.75475 0.76980 0.76638 1.20791 1.21943 1.22285 1.19837 0.95078 0.98083 1.34079 0.91133 1.44462 1.15611 1.41024 1.31338 1.22285 0.93028 0.95698 0.91894 1.23054 0.97472 0.96113 0.80928 0.91649 1.86519 1.96474 1.34284 1.19138 1.22181 0.81308 0.94832 0.98004 0.87807 1.45885 1.10162 1.07347 1.73481 1.20374 0.90358 0.82481 0.77033 1.90777 1.49538 1.50673 1.48838 1.20730 0.95527 0.93292 1.05135 1.19036 0.98354 0.93869 0.92797 1.20765 0.99707 0.93950 0.97953 1.20844 0.98759 0.94361 0.97732 1.20774 0.99487 1.00178 0.90982 1.18840 0.98169 0.89777 0.92691 1.68033 1.11898 1.39767 0.98731 1.22947 0.93270 0.91426 0.96632 1.21901 1.02183 0.95973 0.99443 1.21477 0.94249 1.00407 0.91775 1.18601 1.01451 0.94128 0.94410 1.21964 0.90259 0.95337 0.92740 0.92048 0.94646 0.93290 0.77529 0.76837 0.87763 0.87415 0.85522 0.85186 0.84809 0.82415 0.84408 0.84708 0.92790 0.95758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.70 55.49 0.76 -26.68 16 2 C 0.00 0.06 5.29 -17.43 -0.09 -0.03 16 3 Si 1.04 25.14 26.22 -169.99 -4.46 20.68 16 4 H -0.28 -6.30 6.16 56.52 0.35 -5.95 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.34 -9.83 10.24 -15.06 -0.15 -9.98 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 N -0.60 -14.58 3.06 -170.07 -0.52 -15.10 16 10 C 0.10 2.03 5.82 -3.06 -0.02 2.02 16 11 C 0.08 1.36 3.94 -24.89 -0.10 1.26 16 12 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -8.15 13.40 -35.23 -0.47 -8.62 16 14 C 0.14 2.46 3.04 -65.78 -0.20 2.26 16 15 H 0.10 2.10 7.73 -51.93 -0.40 1.70 16 16 N -0.72 -9.29 5.23 -51.73 -0.27 -9.56 16 17 C 0.51 6.98 7.82 -10.99 -0.09 6.90 16 18 O -0.52 -9.75 15.78 5.55 0.09 -9.66 16 19 C -0.11 -0.98 5.24 -29.04 -0.15 -1.14 16 20 C -0.04 -0.45 4.38 -104.56 -0.46 -0.90 16 21 C -0.11 -1.08 9.58 -39.93 -0.38 -1.47 16 22 C -0.10 -0.95 9.94 -39.95 -0.40 -1.34 16 23 C -0.10 -1.08 9.98 -39.47 -0.39 -1.47 16 24 C 0.13 1.68 6.60 -84.85 -0.56 1.12 16 25 N -0.48 -6.26 10.34 -10.97 -0.11 -6.37 16 26 C 0.13 1.39 11.15 -17.47 -0.19 1.20 16 27 C -0.18 -1.79 10.03 -39.77 -0.40 -2.19 16 28 C -0.05 -0.61 9.37 -39.22 -0.37 -0.98 16 29 C -0.08 -1.07 5.74 -106.80 -0.61 -1.68 16 30 C 0.12 2.56 6.93 -2.53 -0.02 2.55 16 31 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 32 H 0.04 0.76 3.84 -51.93 -0.20 0.56 16 33 H 0.05 1.09 8.06 -51.93 -0.42 0.68 16 34 H 0.38 3.77 9.12 45.56 0.42 4.19 16 35 H 0.40 3.72 8.52 -40.82 -0.35 3.37 16 36 H 0.10 0.72 6.73 -51.93 -0.35 0.37 16 37 H 0.11 0.68 8.04 -51.93 -0.42 0.26 16 38 H 0.13 1.01 8.05 -52.48 -0.42 0.59 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 43 H 0.14 1.32 6.57 -52.49 -0.34 0.97 16 44 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -37.49 373.15 -9.01 -46.50 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.07 Total: 7.06 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -4.58 Total: -3.88 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.14 Total: -57.71 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.38 Total: -18.28 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -4.46 Total: 20.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.49 -9.01 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077372748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.070 kcal (2) G-P(sol) polarization free energy of solvation -37.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds