Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48497 * 109.46977 * 265.29380 * 3 2 1 5 5 H 1.48498 * 109.47297 * 145.29165 * 3 2 1 6 6 H 1.48499 * 109.46959 * 25.28979 * 3 2 1 7 7 C 1.38814 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00228 * 332.80687 * 7 2 1 9 9 N 1.36937 * 119.99400 * 152.79973 * 7 2 1 10 10 C 1.47016 * 125.65420 * 349.55922 * 9 7 2 11 11 C 1.54331 * 107.26976 * 178.84882 * 10 9 7 12 12 H 1.09001 * 110.51639 * 96.44889 * 11 10 9 13 13 O 1.42900 * 111.00309 * 219.60250 * 11 10 9 14 14 C 1.55158 * 103.01765 * 338.14424 * 11 10 9 15 15 H 1.09005 * 111.00412 * 277.22842 * 14 11 10 16 16 N 1.46503 * 111.03686 * 153.39432 * 14 11 10 17 17 C 1.34779 * 120.00230 * 161.32632 * 16 14 11 18 18 O 1.21281 * 119.99592 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00305 * 180.02562 * 17 16 14 20 20 C 1.50701 * 109.46955 * 180.02562 * 19 17 16 21 21 C 1.36111 * 120.12131 * 264.72065 * 20 19 17 22 22 C 1.39316 * 121.06457 * 179.68235 * 21 20 19 23 23 C 1.36174 * 120.86866 * 0.64958 * 22 21 20 24 24 C 1.40393 * 119.61037 * 359.65590 * 23 22 21 25 25 C 1.40782 * 121.37543 * 180.02562 * 24 23 22 26 26 C 1.36576 * 118.14887 * 179.97438 * 25 24 23 27 27 C 1.39334 * 119.93551 * 0.02562 * 26 25 24 28 28 N 1.31077 * 121.76047 * 0.02562 * 27 26 25 29 29 C 1.33685 * 121.31981 * 359.97438 * 28 27 26 30 30 C 1.47428 * 125.64294 * 169.87130 * 9 7 2 31 31 H 0.97003 * 119.99648 * 185.05729 * 1 2 3 32 32 H 1.09001 * 109.88088 * 298.39303 * 10 9 7 33 33 H 1.09002 * 109.88269 * 59.55774 * 10 9 7 34 34 H 0.96693 * 114.00116 * 293.77680 * 13 11 10 35 35 H 0.97001 * 120.00193 * 341.32786 * 16 14 11 36 36 H 1.08999 * 109.46835 * 299.99913 * 19 17 16 37 37 H 1.08993 * 109.46820 * 60.00308 * 19 17 16 38 38 H 1.08000 * 119.46887 * 0.02704 * 21 20 19 39 39 H 1.07993 * 119.56761 * 180.30714 * 22 21 20 40 40 H 1.07998 * 120.19783 * 179.68551 * 23 22 21 41 41 H 1.07991 * 120.92378 * 0.02562 * 25 24 23 42 42 H 1.07998 * 120.02937 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.11984 * 179.97438 * 27 26 25 44 44 H 1.08996 * 110.36643 * 322.92496 * 30 9 7 45 45 H 1.08997 * 110.36960 * 85.25373 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5972 1.9889 -1.3953 5 1 3.4945 1.4710 0.7972 6 1 1.4014 2.6793 0.5981 7 6 2.0103 -1.2022 0.0005 8 1 1.5598 -2.0856 0.4284 9 7 3.2661 -1.2678 -0.5415 10 6 3.9099 -0.2163 -1.3423 11 6 5.3219 -0.7197 -1.7093 12 1 5.3219 -1.1655 -2.7040 13 8 6.2792 0.3384 -1.6314 14 6 5.6022 -1.7946 -0.6261 15 1 5.9646 -1.3366 0.2943 16 7 6.5475 -2.8009 -1.1160 17 6 7.2068 -3.5879 -0.2428 18 8 7.0171 -3.4633 0.9486 19 6 8.1796 -4.6226 -0.7467 20 6 8.7764 -5.3627 0.4226 21 6 9.9725 -4.9707 0.9406 22 6 10.5389 -5.6364 2.0254 23 6 9.9165 -6.7079 2.5901 24 6 8.6843 -7.1438 2.0777 25 6 8.0083 -8.2467 2.6331 26 6 6.8133 -8.6138 2.0831 27 6 6.2974 -7.9017 1.0023 28 7 6.9298 -6.8758 0.4869 29 6 8.1033 -6.4647 0.9778 30 6 4.1939 -2.4075 -0.4242 31 1 -0.4850 -0.8368 0.0741 32 1 3.3320 -0.0342 -2.2484 33 1 3.9856 0.7007 -0.7578 34 1 6.1481 1.0364 -2.2875 35 1 6.6990 -2.9008 -2.0689 36 1 7.6576 -5.3273 -1.3940 37 1 8.9733 -4.1314 -1.3095 38 1 10.4881 -4.1265 0.5072 39 1 11.4868 -5.3018 2.4202 40 1 10.3679 -7.2191 3.4275 41 1 8.4228 -8.7870 3.4713 42 1 6.2692 -9.4556 2.4851 43 1 5.3515 -8.2036 0.5773 44 1 4.1154 -2.8604 0.5641 45 1 3.9872 -3.1463 -1.1985 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077480573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = 7.974574 kcal Electronic energy + Delta-G solvation = -29172.154568 eV Core-core repulsion = 25155.588027 eV Total energy + Delta-G solvation = -4016.566541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.10573 -39.67270 -38.18102 -37.22336 -35.34194 -34.27894 -34.03886 -32.04673 -31.47110 -30.71142 -28.99762 -27.93488 -27.09139 -24.39997 -23.85824 -23.75029 -21.79071 -21.04988 -20.33996 -20.03223 -18.46296 -17.65782 -17.34371 -17.13691 -16.99632 -16.69810 -16.04605 -15.23810 -14.89518 -14.67945 -14.59511 -14.47081 -14.11041 -13.93440 -13.71732 -13.47042 -13.25117 -13.16216 -13.09871 -12.66437 -12.30030 -12.19913 -11.94951 -11.87485 -11.74171 -11.60709 -11.38879 -11.08036 -10.65717 -10.64802 -10.28257 -10.02543 -9.69524 -9.60931 -9.45657 -9.17983 -8.92639 -8.83504 -8.43003 -8.34105 -7.13750 -6.33835 -3.19505 0.20778 0.67522 1.80080 2.74668 2.86693 3.32220 3.38659 3.54966 3.70643 3.96161 4.15171 4.28993 4.29797 4.53055 4.57148 4.58695 4.70905 4.82908 4.85498 4.95326 4.98715 5.13210 5.15624 5.22593 5.24014 5.29302 5.34125 5.39701 5.50565 5.61122 5.80099 5.83255 5.86622 5.87769 5.92257 6.19586 6.23610 6.34109 6.38375 6.41302 6.50298 6.62609 6.68457 6.80449 7.66578 7.68444 7.79031 7.79483 8.33145 8.44891 9.02608 9.56533 10.21931 11.14328 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015761 B = 0.002838 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.136044 B = 9865.121547 C =10902.490440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.019 4.019 3 Si 1.067 2.933 4 H -0.295 1.295 5 H -0.290 1.290 6 H -0.298 1.298 7 C -0.330 4.330 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.090 3.910 11 C 0.086 3.914 12 H 0.070 0.930 13 O -0.559 6.559 14 C 0.140 3.860 15 H 0.103 0.897 16 N -0.718 5.718 17 C 0.522 3.478 18 O -0.530 6.530 19 C -0.096 4.096 20 C -0.035 4.035 21 C -0.095 4.095 22 C -0.111 4.111 23 C -0.101 4.101 24 C -0.102 4.102 25 C -0.060 4.060 26 C -0.176 4.176 27 C 0.131 3.869 28 N -0.466 5.466 29 C 0.142 3.858 30 C 0.130 3.870 31 H 0.263 0.737 32 H 0.046 0.954 33 H 0.042 0.958 34 H 0.377 0.623 35 H 0.397 0.603 36 H 0.112 0.888 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.055 0.945 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.867 -15.443 -2.148 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.901 3.099 4 H -0.223 1.223 5 H -0.218 1.218 6 H -0.226 1.226 7 C -0.457 4.457 8 H 0.097 0.903 9 N -0.332 5.332 10 C -0.036 4.036 11 C 0.026 3.974 12 H 0.087 0.913 13 O -0.364 6.364 14 C 0.034 3.966 15 H 0.121 0.879 16 N -0.370 5.370 17 C 0.308 3.692 18 O -0.405 6.405 19 C -0.136 4.136 20 C -0.036 4.036 21 C -0.114 4.114 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.104 4.104 25 C -0.086 4.086 26 C -0.196 4.196 27 C -0.041 4.041 28 N -0.174 5.174 29 C 0.020 3.980 30 C 0.003 3.997 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.225 0.775 35 H 0.231 0.769 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.073 0.927 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 22.378 -13.544 -1.519 26.202 hybrid contribution 0.276 -1.821 -0.013 1.841 sum 22.654 -15.365 -1.532 27.416 Atomic orbital electron populations 1.70928 1.05782 1.30050 1.48893 1.25805 0.96346 1.00793 0.99049 0.83747 0.73999 0.75996 0.76164 1.22288 1.21799 1.22606 1.20051 0.88781 0.97390 1.39503 0.90315 1.44612 1.14753 1.14102 1.59695 1.22334 0.91395 0.93870 0.95999 1.23054 0.88717 0.87868 0.97712 0.91270 1.86522 1.53652 1.35347 1.60885 1.22248 0.89918 0.87018 0.97393 0.87934 1.45850 1.44022 1.37399 1.09690 1.20301 0.80949 0.81315 0.86629 1.90734 1.64877 1.68926 1.15980 1.20549 0.98822 0.97241 0.96999 1.18931 0.93927 0.93898 0.96807 1.20774 0.95191 0.99255 0.96214 1.20858 1.00264 0.95690 0.96095 1.20947 0.93934 0.97365 0.99725 1.18806 0.96730 0.97437 0.97461 1.21440 0.94430 0.94538 0.98157 1.21889 0.97201 1.02063 0.98472 1.22985 0.98766 0.89933 0.92464 1.67991 1.06792 1.12846 1.29727 1.18616 0.91371 0.94989 0.92977 1.21936 0.86430 0.91399 0.99918 0.92626 0.93642 0.94120 0.77546 0.76913 0.87033 0.88135 0.85317 0.85443 0.85368 0.84541 0.84588 0.82406 0.92679 0.95132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.05 13.70 55.49 0.76 -28.29 16 2 C -0.02 -0.57 5.43 -17.43 -0.09 -0.67 16 3 Si 1.07 27.47 24.69 -169.99 -4.20 23.27 16 4 H -0.29 -6.96 6.80 56.52 0.38 -6.58 16 5 H -0.29 -7.36 6.75 56.52 0.38 -6.98 16 6 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 7 C -0.33 -9.77 10.43 -15.06 -0.16 -9.93 16 8 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 9 N -0.60 -15.40 3.28 -170.07 -0.56 -15.96 16 10 C 0.09 1.98 4.78 -3.06 -0.01 1.97 16 11 C 0.09 1.47 3.94 -24.89 -0.10 1.38 16 12 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 13 O -0.56 -8.70 13.40 -35.23 -0.47 -9.17 16 14 C 0.14 2.61 3.04 -65.78 -0.20 2.41 16 15 H 0.10 2.22 7.73 -51.93 -0.40 1.82 16 16 N -0.72 -10.49 5.23 -51.73 -0.27 -10.76 16 17 C 0.52 8.15 7.82 -10.98 -0.09 8.07 16 18 O -0.53 -10.78 15.78 5.56 0.09 -10.69 16 19 C -0.10 -1.10 5.56 -29.03 -0.16 -1.26 16 20 C -0.03 -0.44 4.38 -104.51 -0.46 -0.90 16 21 C -0.09 -1.01 9.56 -39.95 -0.38 -1.39 16 22 C -0.11 -1.04 9.95 -39.92 -0.40 -1.44 16 23 C -0.10 -0.97 9.78 -39.51 -0.39 -1.36 16 24 C -0.10 -1.20 5.74 -106.80 -0.61 -1.81 16 25 C -0.06 -0.56 9.90 -39.22 -0.39 -0.95 16 26 C -0.18 -1.61 10.03 -39.77 -0.40 -2.01 16 27 C 0.13 1.47 11.14 -17.47 -0.19 1.27 16 28 N -0.47 -6.52 9.51 -10.98 -0.10 -6.62 16 29 C 0.14 1.95 6.58 -84.86 -0.56 1.39 16 30 C 0.13 2.86 6.93 -2.53 -0.02 2.84 16 31 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 32 H 0.05 1.00 7.97 -51.93 -0.41 0.59 16 33 H 0.04 0.97 3.51 -51.93 -0.18 0.78 16 34 H 0.38 4.10 9.12 45.56 0.42 4.51 16 35 H 0.40 4.35 8.52 -40.82 -0.35 4.00 16 36 H 0.11 1.19 7.71 -51.93 -0.40 0.79 16 37 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 38 H 0.13 1.08 8.04 -52.49 -0.42 0.66 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 44 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -39.24 373.25 -8.89 -48.14 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.16 Total: 6.85 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -4.61 Total: -2.38 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.17 Total: -61.64 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.38 Total: -19.87 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: -4.20 Total: 23.27 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -39.24 -8.89 -48.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077480573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.113 kcal (2) G-P(sol) polarization free energy of solvation -39.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds