Wall clock time and date at job start Sat Apr 11 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47472 * 239.99864 * 3 2 1 5 5 H 1.48503 * 109.47039 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47124 * 119.99726 * 3 2 1 7 7 C 1.38816 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00082 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99886 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64796 * 0.04412 * 9 7 2 11 11 C 1.54914 * 104.82873 * 204.09330 * 10 9 7 12 12 H 1.09001 * 111.00709 * 81.06500 * 11 10 9 13 13 O 1.42902 * 111.00125 * 204.91579 * 11 10 9 14 14 C 1.55164 * 101.58271 * 322.98600 * 11 10 9 15 15 H 1.08999 * 110.87369 * 277.07091 * 14 11 10 16 16 N 1.46495 * 110.71863 * 153.86566 * 14 11 10 17 17 C 1.34780 * 119.99787 * 160.02391 * 16 14 11 18 18 O 1.21730 * 119.99609 * 0.02562 * 17 16 14 19 19 C 1.46398 * 119.99859 * 180.02562 * 17 16 14 20 20 N 1.37633 * 126.32778 * 0.14965 * 19 17 16 21 21 H 0.96996 * 125.55267 * 0.02562 * 20 19 17 22 22 C 1.35642 * 108.89717 * 180.27540 * 20 19 17 23 23 C 1.35128 * 109.22158 * 359.74631 * 22 20 19 24 24 C 1.39092 * 126.32503 * 180.02562 * 19 17 16 25 25 C 1.48178 * 126.63271 * 359.97438 * 24 19 17 26 26 C 1.39448 * 120.12889 * 129.71473 * 25 24 19 27 27 C 1.37995 * 119.86652 * 179.97438 * 26 25 24 28 28 C 1.38339 * 120.13188 * 0.02562 * 27 26 25 29 29 C 1.38341 * 120.26397 * 0.02562 * 28 27 26 30 30 C 1.37983 * 120.13563 * 359.97438 * 29 28 27 31 31 C 1.47019 * 125.65011 * 179.97438 * 9 7 2 32 32 H 0.96999 * 119.99927 * 0.02562 * 1 2 3 33 33 H 1.09004 * 110.36659 * 322.92630 * 10 9 7 34 34 H 1.08992 * 110.36829 * 85.14478 * 10 9 7 35 35 H 0.96698 * 114.00126 * 292.19414 * 13 11 10 36 36 H 0.96997 * 120.00303 * 340.03356 * 16 14 11 37 37 H 1.07997 * 125.39082 * 179.77677 * 22 20 19 38 38 H 1.07998 * 126.09839 * 179.97438 * 23 22 20 39 39 H 1.08005 * 120.07030 * 0.25432 * 26 25 24 40 40 H 1.08001 * 119.93390 * 179.97438 * 27 26 25 41 41 H 1.07996 * 119.87004 * 179.97438 * 28 27 26 42 42 H 1.07998 * 119.93357 * 179.97438 * 29 28 27 43 43 H 1.08003 * 120.07069 * 180.02562 * 30 29 28 44 44 H 1.08997 * 109.88214 * 59.56063 * 31 9 7 45 45 H 1.08997 * 109.88343 * 298.39414 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 -0.0009 11 6 -0.4022 -3.9322 0.6110 12 1 -0.3536 -3.8979 1.6994 13 8 -1.6569 -4.4573 0.1726 14 6 0.7784 -4.7525 0.0271 15 1 0.5489 -5.1006 -0.9800 16 7 1.1077 -5.8811 0.9011 17 6 1.8002 -6.9302 0.4150 18 8 2.1524 -6.9396 -0.7502 19 6 2.1287 -8.0583 1.2883 20 7 1.7950 -8.1846 2.6176 21 1 1.2974 -7.5349 3.1383 22 6 2.2801 -9.3630 3.0823 23 6 2.9175 -10.0078 2.0803 24 6 2.8338 -9.2017 0.9273 25 6 3.3934 -9.5101 -0.4096 26 6 4.7231 -9.9105 -0.5365 27 6 5.2386 -10.1968 -1.7841 28 6 4.4391 -10.0868 -2.9077 29 6 3.1195 -9.6890 -2.7883 30 6 2.5928 -9.4000 -1.5461 31 6 1.9318 -3.7274 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5999 -1.7587 0.6142 34 1 -0.5265 -2.4850 -1.0195 35 1 -2.4245 -3.9769 0.5120 36 1 0.8271 -5.8735 1.8296 37 1 2.1732 -9.7284 4.0929 38 1 3.4050 -10.9689 2.1508 39 1 5.3471 -10.0007 0.3405 40 1 6.2684 -10.5067 -1.8836 41 1 4.8470 -10.3116 -3.8821 42 1 2.5003 -9.6045 -3.6691 43 1 1.5624 -9.0899 -1.4541 44 1 2.5577 -3.8511 0.8843 45 1 2.5287 -3.8642 -0.9011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077992251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:22 Heat of formation + Delta-G solvation = 22.753407 kcal Electronic energy + Delta-G solvation = -29185.211187 eV Core-core repulsion = 25169.285504 eV Total energy + Delta-G solvation = -4015.925683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46981 -39.29189 -38.67838 -37.67371 -35.14166 -34.19644 -32.59786 -31.79564 -30.78855 -30.14154 -28.93131 -28.16088 -26.93600 -24.62847 -23.32475 -22.42264 -22.01026 -20.81193 -20.73001 -19.98108 -19.34513 -18.86145 -17.08455 -16.99601 -16.55201 -15.80972 -15.62139 -15.27103 -14.90654 -14.77295 -14.55784 -14.09944 -13.99653 -13.63002 -13.58097 -13.39118 -13.22426 -13.01731 -12.85178 -12.79528 -12.35573 -12.27167 -11.95863 -11.56161 -11.31432 -11.09043 -11.03792 -10.93338 -10.84673 -10.25716 -10.04919 -9.95591 -9.78283 -9.42881 -9.33001 -8.91494 -8.75362 -8.72830 -8.58054 -8.01645 -6.96164 -5.75818 -3.18256 1.06319 1.60333 1.69328 2.61049 2.89145 3.22125 3.36346 3.40523 3.41943 3.43331 3.99554 4.35883 4.55009 4.70493 4.85005 4.93243 5.03760 5.11735 5.19253 5.25346 5.26161 5.37671 5.53944 5.56743 5.61145 5.62709 5.71274 5.79763 5.94603 6.03306 6.11540 6.13497 6.20197 6.39317 6.43128 6.54577 6.65106 6.65776 6.71794 6.80471 6.88846 7.13927 7.17151 7.26447 7.48054 7.60895 7.68243 8.02670 8.20715 8.31835 9.10305 9.70667 10.32831 11.28476 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.002793 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.174525 B =10020.881914 C =10754.556781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.067 3.933 12 H 0.060 0.940 13 O -0.565 6.565 14 C 0.145 3.855 15 H 0.102 0.898 16 N -0.716 5.716 17 C 0.582 3.418 18 O -0.513 6.513 19 C -0.034 4.034 20 N -0.538 5.538 21 H 0.418 0.582 22 C 0.021 3.979 23 C -0.196 4.196 24 C -0.046 4.046 25 C -0.018 4.018 26 C -0.105 4.105 27 C -0.131 4.131 28 C -0.121 4.121 29 C -0.125 4.125 30 C -0.063 4.063 31 C 0.130 3.870 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.026 0.974 35 H 0.378 0.622 36 H 0.390 0.610 37 H 0.172 0.828 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.029 0.971 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -21.137 6.126 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.205 4.205 3 Si 0.748 3.252 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.007 3.993 12 H 0.078 0.922 13 O -0.370 6.370 14 C 0.041 3.959 15 H 0.120 0.880 16 N -0.366 5.366 17 C 0.369 3.631 18 O -0.388 6.388 19 C -0.148 4.148 20 N -0.134 5.134 21 H 0.255 0.745 22 C -0.114 4.114 23 C -0.220 4.220 24 C -0.055 4.055 25 C -0.018 4.018 26 C -0.124 4.124 27 C -0.149 4.149 28 C -0.139 4.139 29 C -0.143 4.143 30 C -0.081 4.081 31 C 0.003 3.997 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.044 0.956 35 H 0.225 0.775 36 H 0.223 0.777 37 H 0.189 0.811 38 H 0.162 0.838 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.047 0.953 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.778 -21.181 5.006 21.941 hybrid contribution -0.236 1.634 1.101 1.984 sum 2.542 -19.548 6.107 20.637 Atomic orbital electron populations 1.69716 1.04949 1.25118 1.57579 1.24797 0.95782 0.97830 1.02129 0.86093 0.78396 0.82650 0.78018 1.21043 1.21495 1.21090 1.19069 0.90620 0.82131 1.43354 0.90234 1.44280 1.01438 0.99777 1.87260 1.22549 0.85605 0.91811 0.99638 1.23636 0.82631 0.96184 0.96857 0.92223 1.86417 1.15547 1.58755 1.76309 1.22023 0.94149 0.84847 0.94896 0.87992 1.45901 1.57028 1.19682 1.13974 1.16977 0.78397 0.80836 0.86908 1.90901 1.52642 1.79242 1.16031 1.20575 1.10429 0.99244 0.84518 1.41979 1.43952 1.18091 1.09370 0.74461 1.21884 1.02173 0.87354 1.00007 1.20883 1.07521 1.01752 0.91892 1.18550 1.00329 0.93200 0.93406 1.18072 0.93309 0.99664 0.90766 1.21100 0.94272 0.99572 0.97428 1.20957 0.99535 1.01762 0.92613 1.21132 0.94243 1.00220 0.98319 1.21035 0.95643 1.00233 0.97363 1.21126 0.99886 0.95568 0.91525 1.21625 0.93647 0.85274 0.99124 0.93525 0.86944 0.95560 0.77546 0.77714 0.81104 0.83786 0.86325 0.86396 0.86547 0.86309 0.86268 0.95315 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.16 10.09 55.49 0.56 -25.60 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.25 3.39 -170.07 -0.58 -15.83 16 10 C 0.13 3.05 5.62 -2.52 -0.01 3.03 16 11 C 0.07 1.23 4.04 -24.58 -0.10 1.13 16 12 H 0.06 0.99 8.00 -51.93 -0.42 0.58 16 13 O -0.57 -9.40 13.47 -35.23 -0.47 -9.87 16 14 C 0.15 2.72 2.97 -66.09 -0.20 2.52 16 15 H 0.10 2.12 7.69 -51.93 -0.40 1.72 16 16 N -0.72 -10.77 5.13 -53.42 -0.27 -11.04 16 17 C 0.58 9.37 7.76 -12.98 -0.10 9.27 16 18 O -0.51 -9.94 13.14 5.16 0.07 -9.87 16 19 C -0.03 -0.45 7.07 -81.66 -0.58 -1.03 16 20 N -0.54 -4.93 5.98 -9.24 -0.06 -4.99 16 21 H 0.42 2.66 8.18 -40.82 -0.33 2.33 16 22 C 0.02 0.17 11.86 -16.97 -0.20 -0.04 16 23 C -0.20 -1.98 10.73 -39.67 -0.43 -2.40 16 24 C -0.05 -0.61 5.67 -104.48 -0.59 -1.20 16 25 C -0.02 -0.25 5.27 -104.91 -0.55 -0.80 16 26 C -0.11 -1.32 9.74 -39.22 -0.38 -1.70 16 27 C -0.13 -1.51 10.03 -39.63 -0.40 -1.91 16 28 C -0.12 -1.43 10.04 -39.51 -0.40 -1.83 16 29 C -0.12 -1.64 10.03 -39.64 -0.40 -2.04 16 30 C -0.06 -0.92 7.63 -39.22 -0.30 -1.22 16 31 C 0.13 2.85 6.99 -3.06 -0.02 2.83 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.11 2.88 5.87 -51.93 -0.30 2.58 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.38 4.72 9.12 45.56 0.42 5.13 16 36 H 0.39 4.62 7.64 -40.82 -0.31 4.31 16 37 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.84 7.35 -52.48 -0.39 1.45 16 44 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -34.34 375.96 -10.10 -44.44 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.08 Total: 12.46 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -4.91 Total: -2.11 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.35 Total: -57.46 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.41 Total: -19.75 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.34 -10.10 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077992251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.189 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds