Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99873 * 2 1 4 4 H 1.48501 * 109.46941 * 269.99576 * 3 2 1 5 5 H 1.48507 * 109.47165 * 29.99696 * 3 2 1 6 6 H 1.48506 * 109.47145 * 149.99506 * 3 2 1 7 7 C 1.38816 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65441 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.27001 * 178.90690 * 10 9 7 12 12 H 1.09000 * 110.71938 * 96.35245 * 11 10 9 13 13 O 1.42903 * 110.71964 * 219.44056 * 11 10 9 14 14 C 1.55155 * 103.10829 * 337.89518 * 11 10 9 15 15 H 1.08998 * 111.00699 * 277.34206 * 14 11 10 16 16 N 1.46494 * 111.00449 * 153.48555 * 14 11 10 17 17 C 1.34782 * 119.99807 * 155.00257 * 16 14 11 18 18 O 1.21643 * 120.00162 * 0.02562 * 17 16 14 19 19 C 1.47132 * 120.00225 * 180.02562 * 17 16 14 20 20 C 1.36624 * 126.97014 * 359.68413 * 19 17 16 21 21 N 1.34706 * 108.68018 * 179.87205 * 20 19 17 22 22 H 0.97005 * 124.72982 * 180.12702 * 21 20 19 23 23 C 1.36214 * 110.54841 * 0.41040 * 21 20 19 24 24 C 1.35745 * 108.67819 * 359.75056 * 23 21 20 25 25 C 1.48285 * 126.98188 * 179.97438 * 24 23 21 26 26 C 1.39394 * 120.12658 * 129.72504 * 25 24 23 27 27 C 1.38001 * 119.86998 * 179.77273 * 26 25 24 28 28 C 1.38333 * 120.12750 * 0.50566 * 27 26 25 29 29 C 1.38334 * 120.25401 * 359.74335 * 28 27 26 30 30 C 1.38002 * 120.12775 * 0.02562 * 29 28 27 31 31 C 1.47431 * 125.64289 * 179.97438 * 9 7 2 32 32 H 0.97004 * 120.00608 * 0.02562 * 1 2 3 33 33 H 1.09002 * 109.88077 * 59.49204 * 10 9 7 34 34 H 1.08994 * 110.00952 * 298.39847 * 10 9 7 35 35 H 0.96700 * 114.00311 * 296.16377 * 13 11 10 36 36 H 0.96997 * 120.00555 * 335.00358 * 16 14 11 37 37 H 1.07993 * 125.66331 * 359.97438 * 20 19 17 38 38 H 1.08001 * 125.66528 * 179.78933 * 23 21 20 39 39 H 1.07998 * 120.06358 * 359.97438 * 26 25 24 40 40 H 1.08000 * 119.93810 * 180.25283 * 27 26 25 41 41 H 1.08004 * 119.87277 * 179.72821 * 28 27 26 42 42 H 1.08000 * 119.93332 * 180.02562 * 29 28 27 43 43 H 1.07998 * 120.06454 * 180.02562 * 30 29 28 44 44 H 1.08998 * 110.36636 * 322.99796 * 31 9 7 45 45 H 1.08999 * 110.36518 * 85.32479 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7002 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4483 -4.0441 -0.0282 12 1 -0.6354 -4.4178 0.9785 13 8 -1.5622 -4.3157 -0.8813 14 6 0.8515 -4.6601 -0.6098 15 1 0.8581 -4.6027 -1.6982 16 7 1.0253 -6.0427 -0.1579 17 6 1.7548 -6.9053 -0.8930 18 8 2.2693 -6.5356 -1.9314 19 6 1.9289 -8.2941 -0.4395 20 6 1.4235 -8.8563 0.6985 21 7 1.8059 -10.1470 0.7486 22 1 1.5735 -10.7650 1.4593 23 6 2.5697 -10.4618 -0.3344 24 6 2.6893 -9.3593 -1.1173 25 6 3.4341 -9.2488 -2.3947 26 6 2.8168 -8.7047 -3.5198 27 6 3.5164 -8.6001 -4.7047 28 6 4.8246 -9.0436 -4.7800 29 6 5.4407 -9.5892 -3.6681 30 6 4.7524 -9.6944 -2.4766 31 6 1.9335 -3.7311 0.0005 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5570 -2.0519 -0.8842 34 1 -0.5574 -2.0844 0.8998 35 1 -2.3925 -3.9205 -0.5819 36 1 0.6154 -6.3375 0.6703 37 1 0.8166 -8.3505 1.4347 38 1 3.0071 -11.4282 -0.5370 39 1 1.7939 -8.3627 -3.4634 40 1 3.0405 -8.1750 -5.5760 41 1 5.3669 -8.9638 -5.7106 42 1 6.4624 -9.9334 -3.7326 43 1 5.2346 -10.1202 -1.6091 44 1 2.8334 -3.7402 -0.6144 45 1 2.1658 -4.0424 1.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078175636.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = 21.159060 kcal Electronic energy + Delta-G solvation = -29037.314031 eV Core-core repulsion = 25021.319212 eV Total energy + Delta-G solvation = -4015.994819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35014 -39.15254 -38.68302 -37.55366 -35.00812 -33.91266 -32.53301 -31.76979 -30.78893 -30.20866 -28.51713 -28.13601 -26.88152 -24.50206 -23.01799 -22.83660 -22.23848 -20.47847 -20.41895 -19.81039 -19.25709 -18.71646 -17.00518 -16.77099 -16.49209 -16.03738 -15.53808 -15.06711 -15.00546 -14.56649 -14.45450 -14.08394 -14.03842 -13.77434 -13.60579 -13.27365 -13.25490 -12.84998 -12.81195 -12.62767 -12.37975 -12.10489 -11.98548 -11.42188 -11.19882 -11.09464 -10.92900 -10.84614 -10.78912 -10.13232 -9.85459 -9.79153 -9.70934 -9.34320 -9.22610 -8.78640 -8.71033 -8.65005 -8.49076 -8.06088 -6.87299 -5.73105 -3.07147 1.27101 1.60257 1.71885 2.37192 2.96284 3.41597 3.46169 3.47734 3.52735 3.74829 3.99072 4.47969 4.63753 4.68576 4.84014 4.87344 5.04749 5.09777 5.19401 5.25564 5.34858 5.47160 5.49121 5.60453 5.63901 5.66330 5.73897 5.83503 5.89827 6.11070 6.16401 6.19862 6.21030 6.39143 6.55621 6.62952 6.65464 6.71164 6.75255 6.81503 7.01388 7.15193 7.18839 7.36067 7.50341 7.75641 7.90900 8.15976 8.21099 8.66070 9.18719 9.78840 10.42295 11.38732 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013100 B = 0.002805 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.895785 B = 9981.190570 C =11089.272491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.055 0.945 13 O -0.563 6.563 14 C 0.142 3.858 15 H 0.105 0.895 16 N -0.715 5.715 17 C 0.583 3.417 18 O -0.530 6.530 19 C -0.205 4.205 20 C 0.042 3.958 21 N -0.548 5.548 22 H 0.418 0.582 23 C -0.008 4.008 24 C -0.078 4.078 25 C -0.010 4.010 26 C -0.065 4.065 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.130 4.130 30 C -0.113 4.113 31 C 0.130 3.870 32 H 0.253 0.747 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.375 0.625 36 H 0.392 0.608 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.050 0.950 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -24.870 1.348 24.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.073 0.927 13 O -0.368 6.368 14 C 0.036 3.964 15 H 0.123 0.877 16 N -0.365 5.365 17 C 0.370 3.630 18 O -0.407 6.407 19 C -0.215 4.215 20 C -0.093 4.093 21 N -0.141 5.141 22 H 0.255 0.745 23 C -0.136 4.136 24 C -0.085 4.085 25 C -0.011 4.011 26 C -0.083 4.083 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.148 4.148 30 C -0.131 4.131 31 C 0.003 3.997 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.222 0.778 36 H 0.225 0.775 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.068 0.932 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.628 -24.782 0.346 24.924 hybrid contribution -0.345 0.940 1.245 1.598 sum 2.284 -23.843 1.591 24.005 Atomic orbital electron populations 1.69922 1.04917 1.25135 1.57268 1.24806 0.95774 0.97740 1.02104 0.86072 0.78556 0.83203 0.77666 1.21485 1.21684 1.20634 1.19103 0.90572 0.82109 1.43701 0.90154 1.44241 1.01200 0.99942 1.87383 1.21815 0.85463 0.87843 1.02082 1.23466 0.85681 0.98515 0.91520 0.92709 1.86477 1.19526 1.77590 1.53193 1.22214 0.94071 0.79067 1.01005 0.87696 1.45739 1.53533 1.11253 1.25980 1.17333 0.78290 0.83680 0.83689 1.90814 1.47963 1.78325 1.23609 1.20508 1.08340 0.94506 0.98139 1.21889 1.02803 0.84840 0.99779 1.41382 1.41342 1.10570 1.20853 0.74522 1.21774 1.02230 0.99914 0.89714 1.19102 1.01904 0.92062 0.95387 1.18004 0.92910 0.99082 0.91113 1.21138 1.00202 0.95424 0.91557 1.21069 0.94824 1.00119 0.98067 1.21127 0.95240 0.99350 0.98409 1.20947 0.99554 1.01081 0.93176 1.21097 0.93630 1.00712 0.97634 1.21886 0.94985 0.85607 0.97235 0.93708 0.92173 0.93404 0.77794 0.77489 0.80959 0.81128 0.86103 0.86282 0.86565 0.86467 0.86520 0.93164 0.95992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.02 10.31 55.49 0.57 -26.45 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.63 3.40 -169.94 -0.58 -16.20 16 10 C 0.15 3.68 5.15 -3.07 -0.02 3.67 16 11 C 0.07 1.27 3.97 -24.90 -0.10 1.18 16 12 H 0.06 0.89 8.00 -51.93 -0.42 0.47 16 13 O -0.56 -9.91 13.39 -35.23 -0.47 -10.38 16 14 C 0.14 2.76 3.16 -65.67 -0.21 2.55 16 15 H 0.11 2.37 7.54 -51.93 -0.39 1.97 16 16 N -0.71 -11.10 5.20 -52.79 -0.27 -11.37 16 17 C 0.58 9.76 7.80 -12.65 -0.10 9.66 16 18 O -0.53 -10.91 13.71 5.24 0.07 -10.83 16 19 C -0.20 -2.71 6.29 -103.15 -0.65 -3.36 16 20 C 0.04 0.37 11.38 -16.87 -0.19 0.18 16 21 N -0.55 -3.62 5.88 -12.64 -0.07 -3.69 16 22 H 0.42 1.16 8.96 -40.82 -0.37 0.79 16 23 C -0.01 -0.06 11.80 -16.50 -0.19 -0.26 16 24 C -0.08 -0.98 5.79 -102.94 -0.60 -1.58 16 25 C -0.01 -0.14 5.40 -104.90 -0.57 -0.71 16 26 C -0.07 -0.96 7.94 -39.24 -0.31 -1.27 16 27 C -0.12 -1.63 10.03 -39.63 -0.40 -2.03 16 28 C -0.12 -1.46 10.04 -39.51 -0.40 -1.86 16 29 C -0.13 -1.47 10.03 -39.63 -0.40 -1.87 16 30 C -0.11 -1.35 9.72 -39.24 -0.38 -1.74 16 31 C 0.13 2.87 6.94 -2.41 -0.02 2.85 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 34 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 35 H 0.38 5.03 9.12 45.56 0.42 5.45 16 36 H 0.39 4.72 7.50 -40.82 -0.31 4.41 16 37 H 0.17 0.99 7.44 -52.49 -0.39 0.60 16 38 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.92 7.48 -52.49 -0.39 1.53 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 41 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -36.82 377.53 -9.98 -46.80 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.12 Total: 10.62 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -4.77 Total: -1.51 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.35 Total: -57.72 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.40 Total: -21.21 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.82 -9.98 -46.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078175636.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.959 kcal (2) G-P(sol) polarization free energy of solvation -36.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds