Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48499 * 109.46952 * 269.99460 * 3 2 1 5 5 H 1.48491 * 109.46919 * 30.00109 * 3 2 1 6 6 H 1.48506 * 109.46733 * 149.99700 * 3 2 1 7 7 C 1.38813 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64978 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.27336 * 178.90891 * 10 9 7 12 12 H 1.09002 * 110.71963 * 96.17078 * 11 10 9 13 13 O 1.42901 * 110.71944 * 219.26540 * 11 10 9 14 14 C 1.55157 * 102.94206 * 337.80559 * 11 10 9 15 15 H 1.08997 * 111.00429 * 277.43204 * 14 11 10 16 16 N 1.46502 * 111.00273 * 153.57243 * 14 11 10 17 17 C 1.34778 * 119.99724 * 155.00020 * 16 14 11 18 18 O 1.21713 * 119.99998 * 0.02562 * 17 16 14 19 19 C 1.46580 * 120.00038 * 180.02562 * 17 16 14 20 20 C 1.38054 * 126.00947 * 179.69261 * 19 17 16 21 21 C 1.39352 * 107.44297 * 179.84475 * 20 19 17 22 22 C 1.37824 * 107.65628 * 0.41999 * 21 20 19 23 23 C 1.47814 * 125.82632 * 179.75585 * 22 21 20 24 24 C 1.39591 * 120.14529 * 179.69584 * 23 22 21 25 25 C 1.37949 * 119.84809 * 179.76939 * 24 23 22 26 26 C 1.38360 * 120.14838 * 0.51909 * 25 24 23 27 27 C 1.38360 * 120.29502 * 359.73227 * 26 25 24 28 28 C 1.37953 * 120.14813 * 0.02562 * 27 26 25 29 29 N 1.36410 * 108.34791 * 359.74097 * 22 21 20 30 30 H 0.97003 * 125.71373 * 179.97438 * 29 22 21 31 31 C 1.47426 * 125.64917 * 179.97438 * 9 7 2 32 32 H 0.96994 * 120.00360 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.88222 * 59.49315 * 10 9 7 34 34 H 1.09005 * 110.01447 * 298.39894 * 10 9 7 35 35 H 0.96689 * 114.00373 * 296.15847 * 13 11 10 36 36 H 0.96998 * 120.00124 * 335.00763 * 16 14 11 37 37 H 1.08004 * 126.27048 * 359.96976 * 20 19 17 38 38 H 1.08004 * 126.17287 * 180.13574 * 21 20 19 39 39 H 1.08003 * 120.07202 * 0.03637 * 24 23 22 40 40 H 1.08005 * 119.92425 * 180.27942 * 25 24 23 41 41 H 1.07999 * 119.85096 * 179.76445 * 26 25 24 42 42 H 1.07997 * 119.92800 * 180.02562 * 27 26 25 43 43 H 1.08000 * 120.07510 * 179.97438 * 28 27 26 44 44 H 1.08998 * 110.36876 * 323.00467 * 31 9 7 45 45 H 1.09003 * 110.36123 * 85.32149 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0282 12 1 -0.6324 -4.4185 0.9789 13 8 -1.5648 -4.3152 -0.8780 14 6 0.8523 -4.6559 -0.6122 15 1 0.8581 -4.5956 -1.7005 16 7 1.0292 -6.0394 -0.1640 17 6 1.7599 -6.8986 -0.9019 18 8 2.2732 -6.5249 -1.9403 19 6 1.9365 -8.2830 -0.4538 20 6 2.6508 -9.2642 -1.1117 21 6 2.5679 -10.4256 -0.3461 22 6 1.7983 -10.1421 0.7615 23 6 1.4492 -11.0922 1.8387 24 6 0.6634 -10.6747 2.9142 25 6 0.3373 -11.5678 3.9138 26 6 0.7962 -12.8718 3.8574 27 6 1.5798 -13.2907 2.7968 28 6 1.9092 -12.4092 1.7881 29 7 1.4140 -8.8350 0.6943 30 1 0.8645 -8.3721 1.3459 31 6 1.9334 -3.7312 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5569 -2.0519 -0.8842 34 1 -0.5574 -2.0844 0.8999 35 1 -2.3941 -3.9203 -0.5760 36 1 0.6204 -6.3371 0.6637 37 1 3.1788 -9.1516 -2.0471 38 1 3.0209 -11.3775 -0.5809 39 1 0.3080 -9.6559 2.9615 40 1 -0.2744 -11.2473 4.7442 41 1 0.5412 -13.5660 4.6444 42 1 1.9345 -14.3101 2.7585 43 1 2.5213 -12.7373 0.9610 44 1 2.8333 -3.7403 -0.6143 45 1 2.1657 -4.0423 1.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078269152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = 15.216307 kcal Electronic energy + Delta-G solvation = -28308.345993 eV Core-core repulsion = 24292.093477 eV Total energy + Delta-G solvation = -4016.252516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.53558 -39.55862 -38.93836 -37.72639 -35.12756 -34.19298 -32.42217 -31.94821 -31.63669 -30.86439 -28.94994 -28.03381 -26.94297 -24.65012 -23.65247 -23.09803 -21.77650 -20.84072 -20.60551 -20.22182 -19.91292 -18.90581 -17.27122 -17.05350 -16.72109 -16.04711 -15.74603 -15.25750 -15.18829 -14.82213 -14.60640 -14.21963 -14.17110 -13.98005 -13.88129 -13.68098 -13.31476 -13.01367 -12.85426 -12.75429 -12.61848 -12.47319 -12.12333 -11.70158 -11.57329 -11.41492 -11.29722 -10.93030 -10.83869 -10.21876 -10.04301 -9.97281 -9.87766 -9.81733 -9.40489 -9.38408 -9.24694 -8.95328 -8.67785 -7.89078 -6.95703 -5.79719 -3.14435 0.45670 0.98316 1.60089 2.56705 2.71950 3.17194 3.37806 3.41706 3.43190 3.44494 3.52474 4.24727 4.40273 4.41740 4.53056 4.56070 4.70371 4.79672 4.97969 5.04751 5.10473 5.12828 5.21648 5.39267 5.45516 5.51732 5.58597 5.60360 5.74378 5.77222 5.88311 5.99568 6.03603 6.05234 6.09374 6.10448 6.41262 6.51447 6.52915 6.57585 6.67386 6.82050 7.06724 7.27085 7.41904 7.57166 7.69735 8.05831 8.13184 8.26234 9.11529 9.71499 10.34043 11.32172 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.002135 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.400653 B =13110.786546 C =13536.479581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.916 3.084 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.055 0.945 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.109 0.891 16 N -0.715 5.715 17 C 0.586 3.414 18 O -0.522 6.522 19 C -0.032 4.032 20 C -0.108 4.108 21 C -0.182 4.182 22 C 0.076 3.924 23 C -0.016 4.016 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.122 4.122 27 C -0.113 4.113 28 C -0.100 4.100 29 N -0.531 5.531 30 H 0.415 0.585 31 C 0.130 3.870 32 H 0.254 0.746 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.377 0.623 36 H 0.389 0.611 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.052 0.948 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -26.385 7.623 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.073 0.927 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.127 0.873 16 N -0.364 5.364 17 C 0.373 3.627 18 O -0.398 6.398 19 C -0.146 4.146 20 C -0.134 4.134 21 C -0.206 4.206 22 C -0.041 4.041 23 C -0.017 4.017 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.131 4.131 28 C -0.119 4.119 29 N -0.127 5.127 30 H 0.253 0.747 31 C 0.003 3.997 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.224 0.776 36 H 0.222 0.778 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.070 0.930 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.399 -26.032 6.594 26.857 hybrid contribution -0.570 1.335 1.207 1.888 sum -0.969 -24.697 7.801 25.917 Atomic orbital electron populations 1.69912 1.04952 1.25274 1.57059 1.24826 0.95802 0.97836 1.01933 0.86052 0.78551 0.83066 0.77702 1.21423 1.21637 1.20597 1.19095 0.90581 0.82007 1.43992 0.90079 1.44240 1.01162 0.99879 1.87433 1.21831 0.85482 0.87642 1.02261 1.23460 0.85563 0.98688 0.91507 0.92701 1.86465 1.19480 1.77647 1.53182 1.22316 0.94551 0.78424 1.01323 0.87303 1.45817 1.53069 1.11872 1.25675 1.17014 0.78906 0.82883 0.83935 1.90874 1.48405 1.77145 1.23351 1.20612 1.08050 0.94776 0.91145 1.21231 1.00576 0.91107 1.00453 1.21079 1.04778 0.99603 0.95189 1.19092 1.03282 0.83775 0.97904 1.18101 0.98293 0.92664 0.92666 1.21126 0.98905 0.99674 0.94310 1.21057 0.99760 0.93616 0.98533 1.21256 0.98128 0.96134 0.98526 1.21108 0.98219 0.99704 0.94100 1.21132 0.99672 0.91900 0.99195 1.42031 1.41128 1.09639 1.19877 0.74724 1.21848 0.94909 0.85709 0.97276 0.93615 0.92016 0.93259 0.77589 0.77764 0.83010 0.83588 0.86513 0.85700 0.85882 0.85552 0.85190 0.92954 0.95935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.60 -15.25 3.39 -170.08 -0.58 -15.83 16 10 C 0.15 3.60 5.15 -3.07 -0.02 3.58 16 11 C 0.07 1.23 3.97 -24.90 -0.10 1.13 16 12 H 0.06 0.86 8.00 -51.93 -0.42 0.45 16 13 O -0.56 -9.64 13.39 -35.23 -0.47 -10.11 16 14 C 0.14 2.61 3.15 -65.79 -0.21 2.40 16 15 H 0.11 2.37 7.54 -51.93 -0.39 1.97 16 16 N -0.71 -10.68 5.19 -53.07 -0.28 -10.95 16 17 C 0.59 9.45 7.78 -12.90 -0.10 9.35 16 18 O -0.52 -10.47 16.51 5.18 0.09 -10.38 16 19 C -0.03 -0.41 7.04 -81.94 -0.58 -0.99 16 20 C -0.11 -1.33 10.60 -39.23 -0.42 -1.74 16 21 C -0.18 -1.85 10.22 -39.32 -0.40 -2.26 16 22 C 0.08 0.75 6.93 -82.07 -0.57 0.19 16 23 C -0.02 -0.14 5.87 -104.97 -0.62 -0.76 16 24 C -0.12 -0.94 9.70 -39.18 -0.38 -1.32 16 25 C -0.11 -0.75 10.03 -39.64 -0.40 -1.15 16 26 C -0.12 -0.76 10.04 -39.49 -0.40 -1.16 16 27 C -0.11 -0.71 10.03 -39.64 -0.40 -1.11 16 28 C -0.10 -0.74 9.57 -39.18 -0.37 -1.11 16 29 N -0.53 -5.35 5.90 -5.81 -0.03 -5.39 16 30 H 0.41 3.15 7.24 -40.82 -0.30 2.86 16 31 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 34 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 35 H 0.38 4.89 9.12 45.56 0.42 5.31 16 36 H 0.39 4.50 7.67 -40.82 -0.31 4.18 16 37 H 0.15 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.15 1.11 7.26 -52.48 -0.38 0.73 16 39 H 0.12 0.73 7.14 -52.48 -0.37 0.35 16 40 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 43 H 0.13 0.75 6.98 -52.49 -0.37 0.39 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -34.75 378.76 -10.21 -44.96 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.97 Total: 10.10 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -5.22 Total: 0.96 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.32 Total: -58.26 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.39 Total: -20.49 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.75 -10.21 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078269152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.173 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds