Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48501 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47073 * 300.00731 * 3 2 1 6 6 H 1.48502 * 109.47010 * 59.99955 * 3 2 1 7 7 C 1.38809 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00096 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00165 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.88453 * 26.83487 * 10 9 7 12 12 C 1.53948 * 113.66082 * 255.49373 * 10 9 7 13 13 C 1.53957 * 87.29122 * 220.69730 * 12 10 9 14 14 H 1.09000 * 113.66160 * 270.16750 * 13 12 10 15 15 N 1.46503 * 113.65908 * 139.20284 * 13 12 10 16 16 C 1.34777 * 119.99386 * 104.50829 * 15 13 12 17 17 O 1.21625 * 120.00693 * 359.97438 * 16 15 13 18 18 C 1.47177 * 119.99864 * 179.97438 * 16 15 13 19 19 C 1.35750 * 125.13038 * 179.97438 * 18 16 15 20 20 C 1.46423 * 106.13735 * 180.02562 * 19 18 16 21 21 N 1.32946 * 133.88795 * 180.02562 * 20 19 18 22 22 C 1.31434 * 121.38236 * 179.97438 * 21 20 19 23 23 C 1.38861 * 121.18687 * 359.97314 * 22 21 20 24 24 C 1.38214 * 119.70961 * 0.30707 * 23 22 21 25 25 C 1.39299 * 118.33290 * 359.45464 * 24 23 22 26 26 O 1.34584 * 133.42096 * 180.21597 * 25 24 23 27 27 C 1.52901 * 113.74631 * 158.26054 * 10 9 7 28 28 C 1.52907 * 121.13708 * 265.10405 * 27 10 9 29 29 C 1.53959 * 86.78230 * 100.81854 * 28 27 10 30 30 C 1.52907 * 121.13895 * 13.66516 * 27 10 9 31 31 H 0.97001 * 119.99794 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99920 * 359.97438 * 9 7 2 33 33 H 1.08993 * 113.58309 * 106.09690 * 12 10 9 34 34 H 1.08996 * 113.57732 * 335.29744 * 12 10 9 35 35 H 0.96992 * 120.00170 * 284.50189 * 15 13 12 36 36 H 1.07993 * 126.92862 * 0.05744 * 19 18 16 37 37 H 1.08001 * 119.40098 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.14122 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.82678 * 179.69683 * 24 23 22 40 40 H 1.08998 * 113.66426 * 215.28763 * 28 27 10 41 41 H 1.08993 * 113.66402 * 346.34761 * 28 27 10 42 42 H 1.09000 * 113.57407 * 270.13577 * 29 28 27 43 43 H 1.08995 * 113.58274 * 139.33647 * 29 28 27 44 44 H 1.09004 * 113.65615 * 13.65658 * 30 27 10 45 45 H 1.08996 * 113.66897 * 144.70718 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 1 3.0461 -3.5762 0.4507 12 6 2.0612 -4.3672 -1.3685 13 6 1.8558 -5.6859 -0.6010 14 1 2.7869 -6.1765 -0.3171 15 7 0.9040 -6.5969 -1.2417 16 6 1.3516 -7.6813 -1.9053 17 8 2.5455 -7.9033 -1.9727 18 6 0.3955 -8.5968 -2.5485 19 6 0.7301 -9.7152 -3.2414 20 6 -0.5307 -10.3047 -3.6961 21 7 -0.8398 -11.3861 -4.4050 22 6 -2.0886 -11.6920 -4.6775 23 6 -3.1369 -10.8965 -4.2344 24 6 -2.8690 -9.7577 -3.4984 25 6 -1.5401 -9.4515 -3.2145 26 8 -0.9453 -8.4510 -2.5389 27 6 1.2402 -4.8405 0.5146 28 6 1.3228 -5.2798 1.9769 29 6 -0.0061 -4.5312 2.1865 30 6 -0.2760 -4.7395 0.6852 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3881 -0.0016 33 1 3.0177 -4.3095 -1.8879 34 1 1.2174 -4.0960 -2.0029 35 1 -0.0481 -6.4198 -1.1882 36 1 1.7254 -10.0939 -3.4206 37 1 -2.3032 -12.5781 -5.2565 38 1 -4.1569 -11.1640 -4.4678 39 1 -3.6701 -9.1234 -3.1489 40 1 1.2438 -6.3581 2.1148 41 1 2.1614 -4.8423 2.5184 42 1 0.1221 -3.4853 2.4654 43 1 -0.7069 -5.0594 2.8329 44 1 -0.7144 -3.8704 0.1948 45 1 -0.8043 -5.6659 0.4601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078681765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = 69.025105 kcal Electronic energy + Delta-G solvation = -28857.328299 eV Core-core repulsion = 24843.409107 eV Total energy + Delta-G solvation = -4013.919191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.05112 -40.69640 -39.45553 -38.81102 -35.00016 -34.26761 -33.59427 -32.61955 -31.89618 -30.52294 -29.77775 -25.86734 -25.55309 -24.33370 -24.21629 -23.76379 -22.60817 -21.68736 -20.81740 -20.50310 -18.98329 -18.09334 -17.90088 -17.08519 -16.91891 -16.74150 -16.24071 -16.04054 -15.15249 -14.97646 -14.75773 -14.59297 -14.29883 -14.04443 -13.71978 -13.48493 -13.44402 -13.08801 -13.05664 -12.82126 -12.58925 -12.15604 -11.91350 -11.58011 -11.29110 -11.00373 -10.99239 -10.88077 -10.77830 -10.45800 -10.19891 -10.07930 -9.97500 -9.91483 -9.78104 -9.51399 -9.44577 -9.11926 -8.90462 -8.78266 -7.01962 -5.84056 -3.12601 0.06623 0.68567 1.40022 1.98196 2.86626 2.90581 3.30442 3.39615 3.46297 3.47862 3.68974 3.99064 4.29248 4.41505 4.52529 4.55486 4.70258 4.76055 4.85841 4.93159 4.99226 5.14277 5.17182 5.20457 5.35120 5.38351 5.49504 5.62452 5.72085 5.75954 5.85315 5.86626 5.92016 5.93298 6.01590 6.12484 6.28180 6.29968 6.38528 6.46454 6.49242 6.54446 6.79568 6.85233 6.99095 7.38003 7.40948 7.66602 7.91510 8.34732 9.46698 10.02523 10.37438 11.38264 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018033 B = 0.002314 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.320205 B =12098.622153 C =12292.217312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.193 3.807 11 H 0.082 0.918 12 C -0.174 4.174 13 C 0.127 3.873 14 H 0.114 0.886 15 N -0.693 5.693 16 C 0.596 3.404 17 O -0.512 6.512 18 C 0.001 3.999 19 C -0.109 4.109 20 C 0.064 3.936 21 N -0.440 5.440 22 C 0.101 3.899 23 C -0.144 4.144 24 C -0.059 4.059 25 C 0.017 3.983 26 O -0.176 6.176 27 C -0.117 4.117 28 C -0.126 4.126 29 C -0.130 4.130 30 C -0.119 4.119 31 H 0.255 0.745 32 H 0.387 0.613 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.406 0.594 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.963 -22.378 -4.502 23.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.080 3.920 11 H 0.100 0.900 12 C -0.216 4.216 13 C 0.023 3.977 14 H 0.132 0.868 15 N -0.342 5.342 16 C 0.380 3.620 17 O -0.389 6.389 18 C -0.051 4.051 19 C -0.130 4.130 20 C -0.066 4.066 21 N -0.149 5.149 22 C -0.065 4.065 23 C -0.164 4.164 24 C -0.085 4.085 25 C -0.034 4.034 26 O -0.077 6.077 27 C -0.120 4.120 28 C -0.164 4.164 29 C -0.167 4.167 30 C -0.156 4.156 31 H 0.065 0.935 32 H 0.223 0.777 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.196 0.804 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.393 -22.579 -4.646 23.675 hybrid contribution -1.110 1.373 0.084 1.767 sum -6.502 -21.207 -4.562 22.645 Atomic orbital electron populations 1.69662 1.05113 1.25672 1.57538 1.24746 0.95518 0.97755 1.02752 0.86127 0.78879 0.84066 0.77164 1.20486 1.21887 1.21871 1.19335 0.91167 0.84035 1.42796 0.90954 1.42351 1.05842 0.99449 1.86844 1.21045 0.94546 0.84347 0.92034 0.90003 1.24311 1.01993 0.94567 1.00733 1.22491 0.92722 0.88034 0.94452 0.86781 1.45964 1.11525 1.24143 1.52545 1.16661 0.86106 0.80335 0.78935 1.90892 1.13810 1.73780 1.60457 1.22323 0.80621 0.98730 1.03456 1.22505 0.98188 0.93863 0.98457 1.20661 0.93092 0.93466 0.99341 1.67046 1.22007 1.14962 1.10912 1.22872 0.86640 0.99405 0.97567 1.22091 1.01691 0.94410 0.98194 1.20548 0.91999 0.97740 0.98260 1.20582 0.95546 0.89700 0.97560 1.84029 1.18525 1.43265 1.61844 1.23579 0.97188 0.97904 0.93287 1.22719 0.98607 0.99249 0.95783 1.22731 0.96645 1.01634 0.95695 1.22455 0.94219 1.01383 0.97579 0.93501 0.77743 0.91789 0.90000 0.75769 0.80389 0.81531 0.83031 0.83357 0.90919 0.91289 0.89046 0.92423 0.90127 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.43 9.98 -15.06 -0.15 -6.58 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.50 5.35 -53.00 -0.28 -16.79 16 10 C 0.19 3.60 4.35 -67.49 -0.29 3.31 16 11 H 0.08 1.54 8.12 -51.93 -0.42 1.11 16 12 C -0.17 -2.97 7.68 -25.75 -0.20 -3.16 16 13 C 0.13 1.86 4.08 -67.48 -0.28 1.58 16 14 H 0.11 1.70 7.54 -51.93 -0.39 1.31 16 15 N -0.69 -9.16 5.29 -54.52 -0.29 -9.44 16 16 C 0.60 8.35 7.80 -12.63 -0.10 8.25 16 17 O -0.51 -8.48 16.47 5.26 0.09 -8.39 16 18 C 0.00 0.01 7.07 -36.84 -0.26 -0.25 16 19 C -0.11 -1.32 10.81 -37.18 -0.40 -1.72 16 20 C 0.06 0.76 7.52 -83.17 -0.63 0.14 16 21 N -0.44 -4.89 10.41 -9.87 -0.10 -4.99 16 22 C 0.10 0.75 11.17 -17.49 -0.20 0.55 16 23 C -0.14 -0.84 10.09 -39.36 -0.40 -1.24 16 24 C -0.06 -0.45 10.19 -39.20 -0.40 -0.85 16 25 C 0.02 0.18 7.42 -38.27 -0.28 -0.10 16 26 O -0.18 -2.08 10.28 3.37 0.03 -2.05 16 27 C -0.12 -1.77 1.06 -154.72 -0.16 -1.94 16 28 C -0.13 -1.75 7.84 -26.28 -0.21 -1.95 16 29 C -0.13 -1.90 8.08 -25.75 -0.21 -2.10 16 30 C -0.12 -1.73 6.77 -26.28 -0.18 -1.91 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.39 9.51 5.87 -40.82 -0.24 9.27 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.41 4.85 6.64 -40.82 -0.27 4.58 16 36 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 37 H 0.17 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.15 0.34 8.06 -52.49 -0.42 -0.09 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.37 6.43 -51.93 -0.33 1.04 16 45 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -31.65 377.93 -9.38 -41.03 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.79 Total: 12.85 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -4.43 Total: -8.40 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.05 Total: -57.61 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.12 Total: -10.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.65 -9.38 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078681765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.056 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds