Wall clock time and date at job start Sat Apr 11 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99762 * 2 1 4 4 H 1.48501 * 109.47110 * 270.00713 * 3 2 1 5 5 H 1.48504 * 109.46956 * 30.00206 * 3 2 1 6 6 H 1.48500 * 109.47091 * 150.00569 * 3 2 1 7 7 C 1.38810 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99994 * 359.97438 * 7 2 1 9 9 N 1.36938 * 119.99928 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99804 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88472 * 336.34683 * 10 9 7 12 12 C 1.53953 * 113.74550 * 107.77867 * 10 9 7 13 13 C 1.53941 * 87.29705 * 139.21374 * 12 10 9 14 14 H 1.09002 * 113.75007 * 220.78030 * 13 12 10 15 15 N 1.46509 * 113.66379 * 89.73713 * 13 12 10 16 16 C 1.34767 * 119.99724 * 107.81365 * 15 13 12 17 17 O 1.21625 * 120.00663 * 359.97438 * 16 15 13 18 18 C 1.47178 * 119.99870 * 180.02562 * 16 15 13 19 19 C 1.35750 * 125.13056 * 179.97438 * 18 16 15 20 20 C 1.46423 * 106.13735 * 179.97438 * 19 18 16 21 21 N 1.32946 * 133.88795 * 180.02562 * 20 19 18 22 22 C 1.31434 * 121.38236 * 179.97438 * 21 20 19 23 23 C 1.38861 * 121.18687 * 359.97314 * 22 21 20 24 24 C 1.38214 * 119.70961 * 0.30707 * 23 22 21 25 25 C 1.39299 * 118.33290 * 359.45464 * 24 23 22 26 26 O 1.34584 * 133.42096 * 180.21597 * 25 24 23 27 27 C 1.52909 * 113.65993 * 205.00494 * 10 9 7 28 28 C 1.52912 * 121.13605 * 346.25263 * 27 10 9 29 29 C 1.53957 * 86.77983 * 100.82515 * 28 27 10 30 30 C 1.52908 * 121.13949 * 94.81884 * 27 10 9 31 31 H 0.96992 * 120.00206 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00050 * 0.02562 * 9 7 2 33 33 H 1.08999 * 113.57945 * 24.60541 * 12 10 9 34 34 H 1.09006 * 113.57181 * 253.82151 * 12 10 9 35 35 H 0.96997 * 119.99349 * 287.81413 * 15 13 12 36 36 H 1.07993 * 126.92874 * 0.02562 * 19 18 16 37 37 H 1.08001 * 119.40098 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.14122 * 180.02562 * 23 22 21 39 39 H 1.07996 * 120.82678 * 179.69683 * 24 23 22 40 40 H 1.09001 * 113.65841 * 215.29339 * 28 27 10 41 41 H 1.09000 * 113.66548 * 346.35015 * 28 27 10 42 42 H 1.09002 * 113.57498 * 270.12978 * 29 28 27 43 43 H 1.09001 * 113.65007 * 139.35027 * 29 28 27 44 44 H 1.09000 * 113.66225 * 13.64729 * 30 27 10 45 45 H 1.08999 * 113.66168 * 144.70930 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5277 -3.2977 0.4022 12 6 4.7943 -2.7928 -1.3432 13 6 5.9997 -3.2937 -0.5271 14 1 6.9639 -3.0078 -0.9476 15 7 5.9272 -4.7161 -0.1838 16 6 6.7388 -5.5997 -0.7977 17 8 7.5311 -5.2164 -1.6372 18 6 6.6656 -7.0287 -0.4533 19 6 7.4302 -8.0053 -1.0049 20 6 7.0169 -9.2559 -0.3652 21 7 7.3972 -10.5238 -0.4886 22 6 6.8451 -11.4769 0.2286 23 6 5.8410 -11.1965 1.1460 24 6 5.4054 -9.8949 1.3083 25 6 6.0052 -8.8968 0.5438 26 8 5.8290 -7.5653 0.4584 27 6 5.5185 -2.3674 0.5904 28 6 6.1777 -1.0086 0.8297 29 6 5.7878 -1.1774 2.3095 30 6 5.7845 -2.6965 2.0597 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3620 -0.0007 33 1 5.0114 -1.9102 -1.9448 34 1 4.2939 -3.5787 -1.9090 35 1 5.2951 -5.0218 0.4854 36 1 8.1907 -7.8842 -1.7621 37 1 7.1784 -12.4963 0.1021 38 1 5.3994 -11.9928 1.7268 39 1 4.6223 -9.6572 2.0130 40 1 7.2541 -1.0083 0.6582 41 1 5.6682 -0.1819 0.3346 42 1 4.8046 -0.7730 2.5502 43 1 6.5610 -0.8515 3.0053 44 1 4.9609 -3.2182 2.5472 45 1 6.7505 -3.1705 2.2339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078681766.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:35 Heat of formation + Delta-G solvation = 73.902619 kcal Electronic energy + Delta-G solvation = -28961.284877 eV Core-core repulsion = 24947.577190 eV Total energy + Delta-G solvation = -4013.707686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.07150 -40.83987 -39.49625 -38.87318 -35.29566 -34.30839 -33.61152 -32.49245 -31.90873 -30.75296 -30.10493 -25.92539 -25.62994 -24.47730 -24.29817 -23.78768 -22.46373 -21.75134 -21.16123 -20.31664 -19.01275 -18.42418 -18.08404 -17.27442 -16.94248 -16.79729 -16.14848 -16.02375 -15.26464 -15.03942 -14.90353 -14.70650 -14.29092 -14.07176 -13.73316 -13.53090 -13.47359 -13.27002 -13.03953 -12.81391 -12.58673 -12.29992 -12.15614 -11.99702 -11.60770 -11.08656 -11.00854 -10.99529 -10.80725 -10.56355 -10.28952 -10.08644 -10.06774 -9.92217 -9.76581 -9.54602 -9.45761 -9.16311 -8.93605 -8.87983 -7.33711 -5.84214 -3.20192 0.04490 0.67580 1.37302 1.95137 2.76402 2.84712 3.29328 3.31259 3.34439 3.40603 3.63995 3.97700 4.27139 4.40628 4.51034 4.52025 4.57092 4.72681 4.80051 4.86717 4.92112 5.03020 5.06475 5.14600 5.25674 5.33889 5.47040 5.48857 5.56022 5.69826 5.72274 5.82863 5.84504 5.85951 5.89816 5.93655 6.13866 6.20396 6.23241 6.27608 6.41637 6.47118 6.65817 6.70572 6.82027 7.29209 7.39570 7.84998 7.91644 8.35327 9.12741 9.85068 10.04677 11.33861 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017765 B = 0.002487 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.715560 B =11254.570515 C =11806.143141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.732 5.732 10 C 0.198 3.802 11 H 0.085 0.915 12 C -0.174 4.174 13 C 0.127 3.873 14 H 0.103 0.897 15 N -0.686 5.686 16 C 0.600 3.400 17 O -0.511 6.511 18 C 0.000 4.000 19 C -0.107 4.107 20 C 0.063 3.937 21 N -0.440 5.440 22 C 0.101 3.899 23 C -0.143 4.143 24 C -0.059 4.059 25 C 0.018 3.982 26 O -0.175 6.175 27 C -0.125 4.125 28 C -0.111 4.111 29 C -0.134 4.134 30 C -0.125 4.125 31 H 0.260 0.740 32 H 0.364 0.636 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.108 -19.499 4.610 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.372 5.372 10 C 0.086 3.914 11 H 0.103 0.897 12 C -0.216 4.216 13 C 0.022 3.978 14 H 0.121 0.879 15 N -0.334 5.334 16 C 0.384 3.616 17 O -0.388 6.388 18 C -0.052 4.052 19 C -0.128 4.128 20 C -0.066 4.066 21 N -0.149 5.149 22 C -0.065 4.065 23 C -0.163 4.163 24 C -0.085 4.085 25 C -0.033 4.033 26 O -0.076 6.076 27 C -0.128 4.128 28 C -0.149 4.149 29 C -0.171 4.171 30 C -0.163 4.163 31 H 0.070 0.930 32 H 0.199 0.801 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.244 0.756 36 H 0.196 0.804 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 15.840 -19.191 3.561 25.137 hybrid contribution -0.433 1.121 0.809 1.449 sum 15.407 -18.070 4.370 24.145 Atomic orbital electron populations 1.69695 1.05122 1.25920 1.57087 1.24679 0.95217 0.97196 1.01788 0.86625 0.79314 0.85117 0.77928 1.20982 1.21660 1.20131 1.19105 0.80569 0.94745 1.43438 0.89155 1.42729 1.03978 1.01949 1.88504 1.21285 0.87979 0.90183 0.91997 0.89699 1.24265 0.96263 1.01094 0.99951 1.21835 1.00314 0.78025 0.97588 0.87943 1.45520 1.38649 1.07525 1.41703 1.16581 0.81566 0.81668 0.81793 1.90897 1.38242 1.77155 1.32500 1.22211 0.94414 0.94639 0.93910 1.22502 1.01322 0.87565 1.01442 1.20650 0.96234 0.92428 0.97302 1.67045 1.26241 0.98726 1.22912 1.22874 0.93208 0.98449 0.91931 1.22098 0.98343 0.96048 0.99833 1.20558 0.99854 0.89652 0.98456 1.20578 0.99405 0.82921 1.00381 1.84031 1.52852 1.19078 1.51606 1.23638 0.99478 0.96199 0.93440 1.22488 0.99559 0.95866 0.96960 1.22766 1.02144 0.96254 0.95948 1.22643 1.01168 0.96948 0.95501 0.92975 0.80104 0.89292 0.91582 0.75609 0.80392 0.81522 0.83007 0.83303 0.90225 0.91007 0.89344 0.92116 0.91302 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.97 55.49 0.78 -27.79 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.43 27.74 -169.99 -4.71 16.71 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 7 C -0.25 -6.70 10.45 -15.06 -0.16 -6.86 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 9 N -0.73 -16.16 5.13 -52.99 -0.27 -16.43 16 10 C 0.20 3.48 4.27 -67.48 -0.29 3.19 16 11 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 12 C -0.17 -2.80 7.68 -25.75 -0.20 -3.00 16 13 C 0.13 1.76 4.12 -67.48 -0.28 1.48 16 14 H 0.10 1.46 7.46 -51.93 -0.39 1.07 16 15 N -0.69 -8.54 5.04 -54.52 -0.27 -8.82 16 16 C 0.60 7.99 7.80 -12.63 -0.10 7.90 16 17 O -0.51 -8.13 16.42 5.26 0.09 -8.05 16 18 C 0.00 0.00 7.07 -36.84 -0.26 -0.26 16 19 C -0.11 -1.25 10.81 -37.18 -0.40 -1.65 16 20 C 0.06 0.74 7.52 -83.17 -0.63 0.11 16 21 N -0.44 -4.78 10.41 -9.87 -0.10 -4.89 16 22 C 0.10 0.73 11.17 -17.49 -0.20 0.53 16 23 C -0.14 -0.82 10.09 -39.36 -0.40 -1.21 16 24 C -0.06 -0.44 10.19 -39.20 -0.40 -0.84 16 25 C 0.02 0.19 7.42 -38.27 -0.28 -0.10 16 26 O -0.18 -2.00 10.28 3.37 0.03 -1.96 16 27 C -0.13 -1.79 0.92 -154.71 -0.14 -1.93 16 28 C -0.11 -1.56 7.47 -26.28 -0.20 -1.76 16 29 C -0.13 -1.85 8.08 -25.74 -0.21 -2.05 16 30 C -0.13 -1.60 7.49 -26.28 -0.20 -1.80 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.36 7.95 3.78 -40.82 -0.15 7.80 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.41 4.56 8.34 -40.82 -0.34 4.22 16 36 H 0.18 1.87 8.06 -52.49 -0.42 1.44 16 37 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.14 6.42 -51.93 -0.33 0.80 16 42 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -32.90 377.48 -9.08 -41.98 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -5.88 Total: 11.68 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -4.42 Total: -8.12 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.13 Total: -57.93 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.12 Total: -10.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.90 -9.08 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078681766.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.879 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds