Wall clock time and date at job start Sat Apr 11 2020 06:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00237 * 2 1 4 4 H 1.48493 * 109.47347 * 270.00839 * 3 2 1 5 5 H 1.48505 * 109.46837 * 30.00687 * 3 2 1 6 6 H 1.48495 * 109.47080 * 150.00374 * 3 2 1 7 7 C 1.38810 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00124 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99909 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99749 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.89273 * 26.83733 * 10 9 7 12 12 C 1.53950 * 113.66128 * 255.48725 * 10 9 7 13 13 C 1.53947 * 87.30059 * 220.70149 * 12 10 9 14 14 H 1.08994 * 113.66676 * 139.29573 * 13 12 10 15 15 N 1.46502 * 113.66407 * 270.26803 * 13 12 10 16 16 C 1.34772 * 119.99589 * 255.49269 * 15 13 12 17 17 O 1.21632 * 120.00308 * 359.97438 * 16 15 13 18 18 C 1.47169 * 119.99874 * 179.97438 * 16 15 13 19 19 C 1.35760 * 125.12938 * 179.97438 * 18 16 15 20 20 C 1.46418 * 106.13597 * 180.24400 * 19 18 16 21 21 N 1.32948 * 133.87877 * 180.53226 * 20 19 18 22 22 C 1.31435 * 121.38127 * 179.55876 * 21 20 19 23 23 C 1.38857 * 121.18296 * 359.70191 * 22 21 20 24 24 C 1.38209 * 119.71378 * 359.97438 * 23 22 21 25 25 C 1.39297 * 118.33899 * 0.02562 * 24 23 22 26 26 O 1.34583 * 133.43217 * 180.02562 * 25 24 23 27 27 C 1.52912 * 113.74505 * 158.26424 * 10 9 7 28 28 C 1.52909 * 121.13283 * 265.10108 * 27 10 9 29 29 C 1.53953 * 86.78270 * 100.81765 * 28 27 10 30 30 C 1.52906 * 121.13825 * 13.65943 * 27 10 9 31 31 H 0.97004 * 120.00344 * 359.97438 * 1 2 3 32 32 H 0.96997 * 120.00181 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.58206 * 106.09577 * 12 10 9 34 34 H 1.09008 * 113.65179 * 335.32079 * 12 10 9 35 35 H 0.96997 * 120.00262 * 75.48947 * 15 13 12 36 36 H 1.08002 * 126.92799 * 359.97393 * 19 18 16 37 37 H 1.08001 * 119.40371 * 179.67766 * 22 21 20 38 38 H 1.08002 * 120.14326 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.83098 * 180.02562 * 24 23 22 40 40 H 1.09004 * 113.66038 * 215.28302 * 28 27 10 41 41 H 1.08997 * 113.66445 * 346.34529 * 28 27 10 42 42 H 1.09000 * 113.57799 * 270.13505 * 29 28 27 43 43 H 1.09001 * 113.65693 * 139.34561 * 29 28 27 44 44 H 1.09011 * 113.65769 * 13.66090 * 30 27 10 45 45 H 1.08994 * 113.66717 * 144.71173 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4709 -0.0011 11 1 3.5479 -3.2862 -0.4540 12 6 4.7275 -2.8290 1.3639 13 6 5.9713 -3.3103 0.5950 14 1 6.9129 -3.0375 1.0714 15 7 5.9152 -4.7231 0.2113 16 6 6.6455 -5.6337 0.8849 17 8 7.3514 -5.2826 1.8111 18 6 6.5887 -7.0530 0.4999 19 6 7.2784 -8.0544 1.1038 20 6 6.9207 -9.2823 0.3909 21 7 7.2632 -10.5597 0.5266 22 6 6.7746 -11.4873 -0.2662 23 6 5.8748 -11.1699 -1.2749 24 6 5.4812 -9.8571 -1.4538 25 6 6.0089 -8.8871 -0.6047 26 8 5.8431 -7.5552 -0.5054 27 6 5.5457 -2.3542 -0.5200 28 6 5.8831 -2.6451 -1.9827 29 6 5.8990 -1.1200 -2.1921 30 6 6.2161 -0.9907 -0.6911 31 1 -0.4851 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 4.1998 -3.6286 1.8838 34 1 4.9155 -1.9636 1.9994 35 1 5.3525 -5.0031 -0.5275 36 1 7.9576 -7.9630 1.9385 37 1 7.0789 -12.5147 -0.1307 38 1 5.4835 -11.9456 -1.9165 39 1 4.7819 -9.5901 -2.2324 40 1 6.8564 -3.1159 -2.1219 41 1 5.0843 -3.1526 -2.5234 42 1 4.9288 -0.7079 -2.4698 43 1 6.7056 -0.7757 -2.8393 44 1 5.6831 -0.1765 -0.1999 45 1 7.2828 -0.9964 -0.4673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078681767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:38 Heat of formation + Delta-G solvation = 74.125455 kcal Electronic energy + Delta-G solvation = -28960.087659 eV Core-core repulsion = 24946.389635 eV Total energy + Delta-G solvation = -4013.698024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.07092 -40.84892 -39.49711 -38.87241 -35.30314 -34.30885 -33.61022 -32.48878 -31.90763 -30.75091 -30.10209 -25.92918 -25.64774 -24.47896 -24.31500 -23.78721 -22.46612 -21.74484 -21.15847 -20.31605 -19.00722 -18.42487 -18.08361 -17.28010 -16.94227 -16.79914 -16.14409 -16.03290 -15.27785 -15.05183 -14.90591 -14.69880 -14.28703 -14.07004 -13.73130 -13.53284 -13.47386 -13.28141 -13.03943 -12.81250 -12.59042 -12.30612 -12.17478 -11.99717 -11.61706 -11.07442 -11.02244 -11.00437 -10.81170 -10.56901 -10.33443 -10.09657 -9.99510 -9.92092 -9.78351 -9.55513 -9.45674 -9.16367 -8.94674 -8.88124 -7.33115 -5.83894 -3.19805 0.04619 0.67658 1.37494 1.95175 2.76412 2.85123 3.29411 3.31670 3.33947 3.40512 3.64097 3.97792 4.27184 4.40617 4.50986 4.52183 4.55263 4.72373 4.78786 4.85127 4.92000 5.01434 5.03736 5.14770 5.27118 5.33917 5.44714 5.48894 5.56074 5.70062 5.72478 5.81940 5.83492 5.84588 5.88959 5.93046 6.11631 6.19449 6.23208 6.26537 6.41885 6.48516 6.63188 6.69108 6.83260 7.29085 7.39680 7.85279 7.92126 8.35653 9.13158 9.85469 10.05101 11.34231 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.002487 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.876429 B =11256.209481 C =11769.226031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.732 5.732 10 C 0.197 3.803 11 H 0.084 0.916 12 C -0.173 4.173 13 C 0.128 3.872 14 H 0.101 0.899 15 N -0.686 5.686 16 C 0.600 3.400 17 O -0.511 6.511 18 C 0.000 4.000 19 C -0.107 4.107 20 C 0.063 3.937 21 N -0.440 5.440 22 C 0.101 3.899 23 C -0.143 4.143 24 C -0.059 4.059 25 C 0.018 3.982 26 O -0.176 6.176 27 C -0.123 4.123 28 C -0.126 4.126 29 C -0.135 4.135 30 C -0.112 4.112 31 H 0.260 0.740 32 H 0.364 0.636 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.408 0.592 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.474 -19.353 -4.914 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.373 5.373 10 C 0.086 3.914 11 H 0.102 0.898 12 C -0.215 4.215 13 C 0.023 3.977 14 H 0.119 0.881 15 N -0.334 5.334 16 C 0.384 3.616 17 O -0.387 6.387 18 C -0.052 4.052 19 C -0.128 4.128 20 C -0.066 4.066 21 N -0.149 5.149 22 C -0.065 4.065 23 C -0.163 4.163 24 C -0.085 4.085 25 C -0.033 4.033 26 O -0.076 6.076 27 C -0.125 4.125 28 C -0.163 4.163 29 C -0.172 4.172 30 C -0.150 4.150 31 H 0.070 0.930 32 H 0.199 0.801 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.244 0.756 36 H 0.196 0.804 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.095 -19.087 -3.751 25.248 hybrid contribution -0.341 1.152 -0.876 1.486 sum 15.754 -17.936 -4.626 24.316 Atomic orbital electron populations 1.69694 1.05116 1.25909 1.57113 1.24675 0.95214 0.97178 1.01815 0.86622 0.79317 0.85156 0.77879 1.20932 1.21632 1.20265 1.19098 0.80566 0.94745 1.43391 0.89153 1.42727 1.03977 1.01938 1.88649 1.21281 0.87758 0.90073 0.92325 0.89813 1.24264 0.95917 1.01127 1.00231 1.21826 1.00244 0.78198 0.97431 0.88069 1.45523 1.45394 1.07450 1.35072 1.16581 0.80775 0.81573 0.82701 1.90901 1.40925 1.78334 1.28570 1.22210 0.96879 0.94918 0.91160 1.22507 1.01521 0.87582 1.01221 1.20652 0.97590 0.92299 0.96070 1.67047 1.23234 0.99200 1.25436 1.22874 0.93848 0.98745 0.90997 1.22095 0.98715 0.95761 0.99753 1.20555 0.99839 0.89992 0.98139 1.20577 1.00072 0.82844 0.99795 1.84027 1.57432 1.19715 1.46399 1.23577 0.99332 0.96057 0.93562 1.22655 1.01103 0.96965 0.95598 1.22776 1.02195 0.96296 0.95935 1.22503 0.99708 0.95816 0.96937 0.92976 0.80108 0.91640 0.89292 0.75624 0.80387 0.81522 0.83010 0.83310 0.90584 0.91241 0.89371 0.92008 0.90962 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.49 27.73 -169.99 -4.71 16.77 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.25 -6.71 10.46 -15.06 -0.16 -6.87 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 N -0.73 -16.24 5.16 -52.99 -0.27 -16.52 16 10 C 0.20 3.50 4.27 -67.48 -0.29 3.21 16 11 H 0.08 1.50 8.12 -51.93 -0.42 1.08 16 12 C -0.17 -2.84 7.68 -25.75 -0.20 -3.04 16 13 C 0.13 1.78 4.08 -67.48 -0.28 1.50 16 14 H 0.10 1.45 7.54 -51.93 -0.39 1.05 16 15 N -0.69 -8.56 5.07 -54.52 -0.28 -8.84 16 16 C 0.60 8.03 7.80 -12.64 -0.10 7.93 16 17 O -0.51 -8.17 16.47 5.25 0.09 -8.09 16 18 C 0.00 0.00 7.07 -36.84 -0.26 -0.26 16 19 C -0.11 -1.25 10.81 -37.18 -0.40 -1.66 16 20 C 0.06 0.74 7.52 -83.17 -0.63 0.11 16 21 N -0.44 -4.79 10.41 -9.87 -0.10 -4.89 16 22 C 0.10 0.73 11.17 -17.49 -0.20 0.53 16 23 C -0.14 -0.82 10.09 -39.36 -0.40 -1.21 16 24 C -0.06 -0.44 10.19 -39.20 -0.40 -0.84 16 25 C 0.02 0.19 7.42 -38.27 -0.28 -0.10 16 26 O -0.18 -2.00 10.28 3.39 0.03 -1.96 16 27 C -0.12 -1.75 0.91 -154.71 -0.14 -1.89 16 28 C -0.13 -1.58 7.43 -26.28 -0.20 -1.77 16 29 C -0.13 -1.81 8.08 -25.75 -0.21 -2.02 16 30 C -0.11 -1.55 7.45 -26.28 -0.20 -1.75 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.36 7.98 3.73 -40.82 -0.15 7.82 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 35 H 0.41 4.54 8.26 -40.82 -0.34 4.21 16 36 H 0.18 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 39 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.13 6.43 -51.92 -0.33 0.80 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 377.43 15.07 5.69 5.69 Total: -1.00 -33.03 377.43 -9.08 -42.11 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.88 Total: 11.57 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -4.42 Total: -7.99 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.12 Total: -58.10 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.12 Total: -10.05 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.03 -9.08 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078681767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.236 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds