Wall clock time and date at job start Sat Apr 11 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00156 * 2 1 4 4 H 1.48500 * 109.47159 * 239.99857 * 3 2 1 5 5 H 1.48497 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47048 * 120.00355 * 3 2 1 7 7 C 1.38818 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00418 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99631 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99886 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.94559 * 336.40114 * 10 9 7 12 12 C 1.53952 * 113.66472 * 107.81261 * 10 9 7 13 13 C 1.53946 * 87.29285 * 139.20433 * 12 10 9 14 14 H 1.09002 * 113.74691 * 89.74902 * 13 12 10 15 15 N 1.46503 * 113.66233 * 220.79310 * 13 12 10 16 16 C 1.34777 * 119.99937 * 252.18799 * 15 13 12 17 17 O 1.21631 * 120.00317 * 0.02562 * 16 15 13 18 18 C 1.47175 * 119.99939 * 179.97438 * 16 15 13 19 19 C 1.35746 * 125.12760 * 180.30032 * 18 16 15 20 20 C 1.46426 * 106.13312 * 180.08807 * 19 18 16 21 21 N 1.32943 * 133.87917 * 179.97438 * 20 19 18 22 22 C 1.31435 * 121.38608 * 179.68266 * 21 20 19 23 23 C 1.38863 * 121.17564 * 0.02562 * 22 21 20 24 24 C 1.38211 * 119.71800 * 0.02562 * 23 22 21 25 25 C 1.39296 * 118.33393 * 0.02562 * 24 23 22 26 26 O 1.34585 * 133.43223 * 180.02562 * 25 24 23 27 27 C 1.52909 * 86.78803 * 335.26754 * 13 12 10 28 28 C 1.52908 * 121.13628 * 259.18624 * 27 13 12 29 29 C 1.53948 * 86.78251 * 209.37520 * 28 27 13 30 30 C 1.52903 * 121.14285 * 150.61822 * 27 13 12 31 31 H 0.97003 * 119.99866 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99864 * 0.02562 * 9 7 2 33 33 H 1.08995 * 113.57575 * 24.60245 * 12 10 9 34 34 H 1.08998 * 113.57635 * 253.80951 * 12 10 9 35 35 H 0.96999 * 120.00154 * 72.18658 * 15 13 12 36 36 H 1.08000 * 126.93727 * 359.74879 * 19 18 16 37 37 H 1.07995 * 119.40988 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.14139 * 180.02562 * 23 22 21 39 39 H 1.07994 * 120.83569 * 180.02562 * 24 23 22 40 40 H 1.09007 * 113.66337 * 323.84501 * 28 27 13 41 41 H 1.08997 * 113.66734 * 94.90017 * 28 27 13 42 42 H 1.09004 * 113.58285 * 270.12845 * 29 28 27 43 43 H 1.09002 * 113.65112 * 139.34534 * 29 28 27 44 44 H 1.08996 * 113.66326 * 265.09626 * 30 27 13 45 45 H 1.09000 * 113.66197 * 36.05198 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0670 -3.5650 -0.4024 12 6 1.9934 -4.4077 1.3419 13 6 1.8249 -5.7024 0.5263 14 1 2.7677 -6.1868 0.2720 15 7 0.8422 -6.6300 1.0921 16 6 1.2535 -7.7680 1.6857 17 8 2.4406 -8.0246 1.7522 18 6 0.2663 -8.6996 2.2546 19 6 0.5639 -9.8679 2.8785 20 6 -0.7175 -10.4561 3.2735 21 7 -1.0627 -11.5736 3.9054 22 6 -2.3223 -11.8643 4.1433 23 6 -3.3444 -11.0140 3.7425 24 6 -3.0388 -9.8397 3.0808 25 6 -1.6989 -9.5481 2.8362 26 8 -1.0703 -8.5210 2.2351 27 6 1.2655 -4.8229 -0.5925 28 6 -0.2404 -4.7136 -0.8342 29 6 0.1031 -4.4614 -2.3136 30 6 1.4195 -5.2187 -2.0614 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 1.1197 -4.1535 1.9419 34 1 2.9233 -4.3675 1.9091 35 1 -0.1045 -6.4253 1.0394 36 1 1.5470 -10.2828 3.0447 37 1 -2.5666 -12.7809 4.6596 38 1 -4.3737 -11.2693 3.9470 39 1 -3.8193 -9.1651 2.7615 40 1 -0.7797 -5.6452 -0.6630 41 1 -0.7018 -3.8585 -0.3403 42 1 0.2455 -3.4080 -2.5548 43 1 -0.5649 -4.9681 -3.0101 44 1 2.2842 -4.7672 -2.5478 45 1 1.3484 -6.2925 -2.2349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078681768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:41 Heat of formation + Delta-G solvation = 68.922852 kcal Electronic energy + Delta-G solvation = -28855.417270 eV Core-core repulsion = 24841.493645 eV Total energy + Delta-G solvation = -4013.923625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.05250 -40.68548 -39.45425 -38.80982 -34.99368 -34.26367 -33.59496 -32.61903 -31.89693 -30.52423 -29.77867 -25.86513 -25.54092 -24.32747 -24.19943 -23.76415 -22.60545 -21.68616 -20.82159 -20.50601 -18.98435 -18.09345 -17.89460 -17.08152 -16.91974 -16.73465 -16.23783 -16.03717 -15.15252 -14.97396 -14.73959 -14.58713 -14.30022 -14.04636 -13.72068 -13.48595 -13.44466 -13.08600 -13.05354 -12.81245 -12.59285 -12.13202 -11.92465 -11.56782 -11.27983 -10.99360 -10.98613 -10.85281 -10.77831 -10.45092 -10.24408 -10.09214 -9.98829 -9.91557 -9.77671 -9.50233 -9.44630 -9.11835 -8.89414 -8.77260 -7.02298 -5.83801 -3.12419 0.06553 0.68510 1.39894 1.98118 2.86704 2.90295 3.30388 3.40741 3.45779 3.46171 3.68995 3.99028 4.29213 4.41478 4.52630 4.55554 4.71915 4.76357 4.87264 4.93290 5.00510 5.15414 5.17709 5.22145 5.35116 5.38093 5.49496 5.63040 5.71996 5.76459 5.86031 5.86839 5.93094 5.94717 6.02857 6.12320 6.29262 6.30538 6.39057 6.47124 6.49538 6.53895 6.80748 6.86428 6.98919 7.38202 7.40928 7.65466 7.91375 8.34899 9.46690 10.02521 10.37459 11.38334 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018470 B = 0.002307 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.619750 B =12134.619984 C =12373.804119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.705 5.705 10 C 0.194 3.806 11 H 0.084 0.916 12 C -0.174 4.174 13 C 0.127 3.873 14 H 0.116 0.884 15 N -0.692 5.692 16 C 0.596 3.404 17 O -0.513 6.513 18 C 0.001 3.999 19 C -0.109 4.109 20 C 0.064 3.936 21 N -0.440 5.440 22 C 0.101 3.899 23 C -0.144 4.144 24 C -0.059 4.059 25 C 0.017 3.983 26 O -0.176 6.176 27 C -0.119 4.119 28 C -0.118 4.118 29 C -0.129 4.129 30 C -0.126 4.126 31 H 0.256 0.744 32 H 0.387 0.613 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.406 0.594 36 H 0.179 0.821 37 H 0.168 0.832 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 -22.318 3.764 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.343 5.343 10 C 0.081 3.919 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.022 3.978 14 H 0.133 0.867 15 N -0.341 5.341 16 C 0.380 3.620 17 O -0.390 6.390 18 C -0.051 4.051 19 C -0.130 4.130 20 C -0.066 4.066 21 N -0.149 5.149 22 C -0.065 4.065 23 C -0.164 4.164 24 C -0.085 4.085 25 C -0.034 4.034 26 O -0.077 6.077 27 C -0.122 4.122 28 C -0.156 4.156 29 C -0.167 4.167 30 C -0.163 4.163 31 H 0.066 0.934 32 H 0.223 0.777 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.242 0.758 36 H 0.196 0.804 37 H 0.185 0.815 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.666 -22.554 3.899 23.579 hybrid contribution -1.080 1.399 -0.080 1.769 sum -6.746 -21.154 3.819 22.530 Atomic orbital electron populations 1.69639 1.05117 1.25917 1.57318 1.24745 0.95510 0.97744 1.02681 0.86269 0.78552 0.83461 0.77905 1.21209 1.21729 1.21228 1.19252 0.91101 0.84073 1.43136 0.91061 1.42337 1.05827 0.99439 1.86720 1.21044 0.94818 0.84368 0.91719 0.89852 1.24311 1.02074 0.94803 1.00438 1.22501 0.92313 0.87601 0.95336 0.86668 1.45960 1.11584 1.20023 1.56552 1.16666 0.86044 0.80629 0.78696 1.90892 1.14574 1.75130 1.58405 1.22318 0.80787 0.98041 1.03986 1.22506 0.97868 0.93361 0.99280 1.20661 0.93208 0.92568 1.00133 1.67043 1.20793 1.16168 1.10929 1.22871 0.86727 0.99576 0.97306 1.22090 1.01790 0.93909 0.98596 1.20547 0.91605 0.97891 0.98500 1.20580 0.95272 0.88751 0.98777 1.84027 1.17945 1.40984 1.64698 1.23646 0.97477 0.97905 0.93177 1.22444 0.94335 1.01230 0.97558 1.22721 0.96627 1.01606 0.95704 1.22706 0.98661 0.99280 0.95683 0.93387 0.77743 0.90019 0.91773 0.75757 0.80390 0.81529 0.83032 0.83354 0.91159 0.90182 0.89045 0.92490 0.91339 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.48 9.97 -15.06 -0.15 -6.63 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.70 -16.45 5.32 -52.99 -0.28 -16.73 16 10 C 0.19 3.61 4.36 -67.48 -0.29 3.31 16 11 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 12 C -0.17 -2.95 7.68 -25.75 -0.20 -3.15 16 13 C 0.13 1.85 4.12 -67.48 -0.28 1.57 16 14 H 0.12 1.72 7.46 -51.93 -0.39 1.34 16 15 N -0.69 -9.14 5.25 -54.52 -0.29 -9.43 16 16 C 0.60 8.33 7.80 -12.63 -0.10 8.23 16 17 O -0.51 -8.46 16.43 5.25 0.09 -8.38 16 18 C 0.00 0.01 7.07 -36.85 -0.26 -0.25 16 19 C -0.11 -1.32 10.81 -37.18 -0.40 -1.72 16 20 C 0.06 0.76 7.52 -83.18 -0.63 0.14 16 21 N -0.44 -4.89 10.41 -9.87 -0.10 -4.99 16 22 C 0.10 0.74 11.17 -17.49 -0.20 0.55 16 23 C -0.14 -0.84 10.09 -39.36 -0.40 -1.24 16 24 C -0.06 -0.45 10.19 -39.20 -0.40 -0.85 16 25 C 0.02 0.18 7.42 -38.27 -0.28 -0.10 16 26 O -0.18 -2.08 10.28 3.38 0.03 -2.04 16 27 C -0.12 -1.81 1.06 -154.72 -0.16 -1.98 16 28 C -0.12 -1.73 6.78 -26.28 -0.18 -1.91 16 29 C -0.13 -1.91 8.08 -25.75 -0.21 -2.12 16 30 C -0.13 -1.77 7.84 -26.29 -0.21 -1.97 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.39 9.51 5.92 -40.82 -0.24 9.27 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.41 4.86 6.75 -40.82 -0.28 4.59 16 36 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.15 0.34 8.06 -52.49 -0.42 -0.09 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.07 0.87 7.03 -51.93 -0.36 0.51 16 41 H 0.08 1.37 6.42 -51.93 -0.33 1.03 16 42 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -31.51 377.99 -9.39 -40.89 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.80 Total: 13.00 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -4.44 Total: -8.50 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.05 Total: -57.50 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.12 Total: -10.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.51 -9.39 -40.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078681768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.816 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds