Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48500 * 109.47171 * 269.99974 * 3 2 1 5 5 H 1.48501 * 109.47288 * 29.99752 * 3 2 1 6 6 H 1.48496 * 109.47602 * 149.99836 * 3 2 1 7 7 C 1.38814 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.46776 * 125.36505 * 0.02762 * 9 7 2 11 11 C 1.53905 * 107.63030 * 178.78984 * 10 9 7 12 12 H 1.08998 * 109.52997 * 100.77107 * 11 10 9 13 13 O 1.40858 * 110.30128 * 221.40929 * 11 10 9 14 14 C 1.41324 * 118.31135 * 68.00168 * 13 11 10 15 15 C 1.51952 * 111.60637 * 56.89741 * 14 13 11 16 16 N 1.44965 * 111.94070 * 319.69287 * 15 14 13 17 17 C 1.34778 * 117.34053 * 203.73089 * 16 15 14 18 18 O 1.21674 * 120.00126 * 185.78256 * 17 16 15 19 19 C 1.46911 * 119.99860 * 5.50633 * 17 16 15 20 20 C 1.36368 * 126.77061 * 319.88566 * 19 17 16 21 21 N 1.35471 * 109.76712 * 179.97438 * 20 19 17 22 22 H 0.97011 * 124.78670 * 180.02562 * 21 20 19 23 23 C 1.37959 * 110.43321 * 359.97438 * 21 20 19 24 24 C 1.39119 * 133.19590 * 180.02562 * 23 21 20 25 25 C 1.37773 * 119.92557 * 179.27426 * 24 23 21 26 26 C 1.38743 * 120.63961 * 0.59155 * 25 24 23 27 27 C 1.37758 * 120.29932 * 359.62374 * 26 25 24 28 28 C 1.39278 * 119.67136 * 359.97438 * 27 26 25 29 29 C 1.44547 * 125.32007 * 24.02084 * 16 15 14 30 30 H 1.08994 * 109.64490 * 106.18546 * 29 16 15 31 31 C 1.46875 * 125.36364 * 179.97438 * 9 7 2 32 32 H 0.96994 * 120.00028 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.82509 * 59.25485 * 10 9 7 34 34 H 1.09008 * 109.88969 * 298.34756 * 10 9 7 35 35 H 1.09000 * 109.04963 * 296.34776 * 14 13 11 36 36 H 1.08999 * 109.05230 * 177.44598 * 14 13 11 37 37 H 1.09004 * 108.98762 * 199.06074 * 15 14 13 38 38 H 1.09004 * 108.99150 * 80.32504 * 15 14 13 39 39 H 1.07997 * 125.11497 * 359.95189 * 20 19 17 40 40 H 1.07994 * 120.03373 * 359.97438 * 24 23 21 41 41 H 1.08004 * 119.67658 * 180.18851 * 25 24 23 42 42 H 1.08002 * 119.85611 * 179.59750 * 26 25 24 43 43 H 1.08004 * 120.16354 * 179.97438 * 27 26 25 44 44 H 1.09001 * 110.06454 * 317.06098 * 31 9 7 45 45 H 1.09001 * 110.06147 * 78.52506 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1356 -2.5253 -0.0006 11 6 -0.4626 -4.0289 -0.0311 12 1 -0.7264 -4.3649 0.9717 13 8 -1.5356 -4.2780 -0.9090 14 6 -1.3274 -4.0858 -2.2935 15 6 -0.1692 -4.9248 -2.8069 16 7 0.9398 -4.9462 -1.8736 17 6 2.1634 -5.2121 -2.3721 18 8 3.1107 -5.3462 -1.6203 19 6 2.3523 -5.3459 -3.8229 20 6 1.5126 -5.9639 -4.7018 21 7 2.0215 -5.8843 -5.9548 22 1 1.6003 -6.2520 -6.7476 23 6 3.2225 -5.2057 -5.9446 24 6 4.1290 -4.8591 -6.9414 25 6 5.2649 -4.1485 -6.6207 26 6 5.5230 -3.7830 -5.3074 27 6 4.6399 -4.1207 -4.3056 28 6 3.4834 -4.8318 -4.6167 29 6 0.8393 -4.7114 -0.4508 30 1 0.9523 -5.6538 0.0850 31 6 1.9380 -3.7231 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5520 -2.0384 -0.8824 34 1 -0.5511 -2.0750 0.9010 35 1 -1.1136 -3.0330 -2.4783 36 1 -2.2338 -4.3632 -2.8315 37 1 0.1739 -4.5128 -3.7560 38 1 -0.5154 -5.9455 -2.9697 39 1 0.5821 -6.4448 -4.4386 40 1 3.9368 -5.1370 -7.9671 41 1 5.9643 -3.8789 -7.3982 42 1 6.4207 -3.2317 -5.0693 43 1 4.8432 -3.8354 -3.2839 44 1 2.7752 -3.7505 -0.6969 45 1 2.2790 -3.9780 1.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083133958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = 42.864511 kcal Electronic energy + Delta-G solvation = -30858.552076 eV Core-core repulsion = 26843.498476 eV Total energy + Delta-G solvation = -4015.053600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63267 -40.36439 -38.09434 -37.01691 -35.81228 -34.69985 -32.55110 -31.85457 -29.98141 -29.58983 -29.16516 -27.90049 -27.11473 -24.68469 -23.47135 -22.90126 -22.80280 -21.77429 -20.60247 -19.38204 -18.70800 -17.82080 -17.20098 -16.80612 -16.36691 -16.24749 -15.64347 -15.52684 -15.03017 -14.77669 -14.55894 -14.42214 -14.09964 -13.90195 -13.74524 -13.63534 -13.50738 -12.80359 -12.64165 -12.26887 -12.04552 -11.90771 -11.70871 -11.67054 -11.29695 -11.03051 -11.00118 -10.87419 -10.60191 -10.57241 -10.28943 -10.05302 -9.78341 -9.67066 -9.36218 -8.90988 -8.56005 -8.35953 -8.14221 -7.78717 -6.75673 -5.66634 -2.99473 0.98028 1.53402 2.12194 2.84298 3.07994 3.43148 3.45161 3.48771 3.50899 3.92481 4.14608 4.53912 4.55539 4.66131 4.69303 4.91362 5.05154 5.10560 5.16129 5.21200 5.31966 5.43995 5.46837 5.50007 5.57868 5.63914 5.65466 5.74009 5.78865 5.91229 6.02777 6.05075 6.12410 6.34334 6.36196 6.44941 6.58901 6.59293 6.66653 6.89179 7.04650 7.19905 7.25611 7.45360 7.55642 7.63244 7.77739 7.94178 8.30100 8.53930 9.27185 9.87519 10.50995 11.44879 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.004611 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.997477 B = 6071.068715 C = 7727.300743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.110 0.890 13 O -0.371 6.371 14 C 0.057 3.943 15 C 0.075 3.925 16 N -0.581 5.581 17 C 0.584 3.416 18 O -0.526 6.526 19 C -0.211 4.211 20 C 0.091 3.909 21 N -0.583 5.583 22 H 0.418 0.582 23 C 0.087 3.913 24 C -0.132 4.132 25 C -0.099 4.099 26 C -0.142 4.142 27 C -0.059 4.059 28 C -0.063 4.063 29 C 0.112 3.888 30 H 0.073 0.927 31 C 0.118 3.882 32 H 0.251 0.749 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.181 0.819 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.130 0.870 44 H 0.074 0.926 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -13.910 -14.635 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.010 3.990 12 H 0.128 0.872 13 O -0.288 6.288 14 C -0.020 4.020 15 C -0.049 4.049 16 N -0.314 5.314 17 C 0.373 3.627 18 O -0.403 6.403 19 C -0.222 4.222 20 C -0.040 4.040 21 N -0.184 5.184 22 H 0.255 0.745 23 C -0.019 4.019 24 C -0.152 4.152 25 C -0.118 4.118 26 C -0.161 4.161 27 C -0.077 4.077 28 C -0.068 4.068 29 C 0.007 3.993 30 H 0.091 0.909 31 C -0.008 4.008 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.198 0.802 40 H 0.137 0.863 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.091 0.909 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 0.773 -13.851 -14.204 19.854 hybrid contribution 0.304 0.842 -0.544 1.048 sum 1.076 -13.009 -14.748 19.695 Atomic orbital electron populations 1.69948 1.04798 1.24898 1.57666 1.24769 0.95716 0.97560 1.02465 0.86126 0.78672 0.83555 0.77520 1.21727 1.21702 1.20643 1.19057 0.90473 0.82223 1.43080 0.90419 1.44219 1.01125 1.00230 1.87327 1.21658 0.85220 0.88084 1.02224 1.22998 0.84748 0.98631 0.92623 0.87230 1.86857 1.37310 1.88999 1.15656 1.22231 0.97099 0.99851 0.82828 1.21887 0.88819 1.00264 0.93921 1.46495 1.07143 1.70070 1.07700 1.17319 0.82482 0.76556 0.86354 1.90740 1.40521 1.49577 1.59476 1.20073 0.97855 1.11105 0.93161 1.22244 0.98433 1.00386 0.82974 1.41477 1.18852 1.49294 1.08811 0.74488 1.18224 0.88514 0.99585 0.95533 1.19959 0.94775 1.03498 0.96984 1.20805 0.96465 0.97951 0.96621 1.20964 1.00221 1.02366 0.92571 1.20698 0.91717 0.95149 1.00140 1.18724 0.95400 1.01502 0.91155 1.21793 0.98745 0.98907 0.79831 0.90874 1.21967 0.95332 0.84640 0.98857 0.93844 0.92671 0.93060 0.91970 0.88117 0.89498 0.92226 0.80234 0.86273 0.85719 0.85711 0.85190 0.90853 0.95528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.45 10.26 55.49 0.57 -26.88 16 2 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -6.35 10.25 -15.06 -0.15 -6.51 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.93 3.39 -171.21 -0.58 -16.51 16 10 C 0.15 3.78 5.02 -3.42 -0.02 3.76 16 11 C 0.07 1.35 3.82 -26.33 -0.10 1.24 16 12 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 13 O -0.37 -6.61 10.24 -34.46 -0.35 -6.96 16 14 C 0.06 0.85 6.72 36.62 0.25 1.10 16 15 C 0.07 1.01 4.96 -5.40 -0.03 0.98 16 16 N -0.58 -10.10 3.08 -169.97 -0.52 -10.63 16 17 C 0.58 10.71 6.86 -12.75 -0.09 10.62 16 18 O -0.53 -11.24 14.43 5.21 0.08 -11.17 16 19 C -0.21 -3.23 5.35 -103.31 -0.55 -3.78 16 20 C 0.09 0.96 9.47 -16.62 -0.16 0.80 16 21 N -0.58 -5.32 5.99 -10.49 -0.06 -5.38 16 22 H 0.42 2.15 8.96 -40.82 -0.37 1.78 16 23 C 0.09 1.06 7.26 -83.97 -0.61 0.45 16 24 C -0.13 -1.38 10.07 -39.42 -0.40 -1.78 16 25 C -0.10 -1.06 10.01 -39.56 -0.40 -1.46 16 26 C -0.14 -1.79 10.03 -39.57 -0.40 -2.19 16 27 C -0.06 -0.91 10.09 -39.37 -0.40 -1.31 16 28 C -0.06 -0.98 6.36 -104.95 -0.67 -1.65 16 29 C 0.11 2.15 3.38 -68.25 -0.23 1.92 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 C 0.12 2.72 6.29 -3.04 -0.02 2.70 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 33 H 0.06 1.50 5.74 -51.93 -0.30 1.20 16 34 H 0.05 1.40 7.49 -51.92 -0.39 1.01 16 35 H 0.06 1.10 6.81 -51.93 -0.35 0.75 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 1.09 5.62 -51.93 -0.29 0.80 16 38 H 0.06 0.61 7.08 -51.93 -0.37 0.24 16 39 H 0.18 1.28 6.14 -52.49 -0.32 0.95 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 44 H 0.07 1.82 5.11 -51.93 -0.27 1.55 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 353.58 15.07 5.33 5.33 Total: -1.00 -35.87 353.58 -10.21 -46.08 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.58 Total: 3.88 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -4.06 Total: 4.54 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.60 Total: -59.40 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.28 Total: -18.13 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.87 -10.21 -46.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083133958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.945 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds