Wall clock time and date at job start Sat Apr 11 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99960 * 2 1 4 4 H 1.48500 * 109.47171 * 269.99974 * 3 2 1 5 5 H 1.48501 * 109.47288 * 29.99752 * 3 2 1 6 6 H 1.48496 * 109.47602 * 149.99836 * 3 2 1 7 7 C 1.38814 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99808 * 0.02562 * 7 2 1 10 10 C 1.46776 * 125.36505 * 0.02762 * 9 7 2 11 11 C 1.53905 * 107.63030 * 178.78984 * 10 9 7 12 12 H 1.08998 * 109.52997 * 100.77107 * 11 10 9 13 13 O 1.40858 * 110.30128 * 221.40929 * 11 10 9 14 14 C 1.41324 * 118.31135 * 68.00168 * 13 11 10 15 15 C 1.51952 * 111.60637 * 56.89741 * 14 13 11 16 16 N 1.44965 * 111.94070 * 319.69287 * 15 14 13 17 17 C 1.34778 * 117.34053 * 203.73089 * 16 15 14 18 18 O 1.21674 * 120.00126 * 185.78256 * 17 16 15 19 19 C 1.46911 * 119.99860 * 5.50633 * 17 16 15 20 20 C 1.36368 * 126.77061 * 319.88566 * 19 17 16 21 21 N 1.35471 * 109.76712 * 179.97438 * 20 19 17 22 22 H 0.97011 * 124.78670 * 180.02562 * 21 20 19 23 23 C 1.37959 * 110.43321 * 359.97438 * 21 20 19 24 24 C 1.39119 * 133.19590 * 180.02562 * 23 21 20 25 25 C 1.37773 * 119.92557 * 179.27426 * 24 23 21 26 26 C 1.38743 * 120.63961 * 0.59155 * 25 24 23 27 27 C 1.37758 * 120.29932 * 359.62374 * 26 25 24 28 28 C 1.39278 * 119.67136 * 359.97438 * 27 26 25 29 29 C 1.44547 * 125.32007 * 24.02084 * 16 15 14 30 30 H 1.08994 * 109.64490 * 106.18546 * 29 16 15 31 31 C 1.46875 * 125.36364 * 179.97438 * 9 7 2 32 32 H 0.96994 * 120.00028 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.82509 * 59.25485 * 10 9 7 34 34 H 1.09008 * 109.88969 * 298.34756 * 10 9 7 35 35 H 1.09000 * 109.04963 * 296.34776 * 14 13 11 36 36 H 1.08999 * 109.05230 * 177.44598 * 14 13 11 37 37 H 1.09004 * 108.98762 * 199.06074 * 15 14 13 38 38 H 1.09004 * 108.99150 * 80.32504 * 15 14 13 39 39 H 1.07997 * 125.11497 * 359.95189 * 20 19 17 40 40 H 1.07994 * 120.03373 * 359.97438 * 24 23 21 41 41 H 1.08004 * 119.67658 * 180.18851 * 25 24 23 42 42 H 1.08002 * 119.85611 * 179.59750 * 26 25 24 43 43 H 1.08004 * 120.16354 * 179.97438 * 27 26 25 44 44 H 1.09001 * 110.06454 * 317.06098 * 31 9 7 45 45 H 1.09001 * 110.06147 * 78.52506 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1356 -2.5253 -0.0006 11 6 -0.4626 -4.0289 -0.0311 12 1 -0.7264 -4.3649 0.9717 13 8 -1.5356 -4.2780 -0.9090 14 6 -1.3274 -4.0858 -2.2935 15 6 -0.1692 -4.9248 -2.8069 16 7 0.9398 -4.9462 -1.8736 17 6 2.1634 -5.2121 -2.3721 18 8 3.1107 -5.3462 -1.6203 19 6 2.3523 -5.3459 -3.8229 20 6 1.5126 -5.9639 -4.7018 21 7 2.0215 -5.8843 -5.9548 22 1 1.6003 -6.2520 -6.7476 23 6 3.2225 -5.2057 -5.9446 24 6 4.1290 -4.8591 -6.9414 25 6 5.2649 -4.1485 -6.6207 26 6 5.5230 -3.7830 -5.3074 27 6 4.6399 -4.1207 -4.3056 28 6 3.4834 -4.8318 -4.6167 29 6 0.8393 -4.7114 -0.4508 30 1 0.9523 -5.6538 0.0850 31 6 1.9380 -3.7231 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5520 -2.0384 -0.8824 34 1 -0.5511 -2.0750 0.9010 35 1 -1.1136 -3.0330 -2.4783 36 1 -2.2338 -4.3632 -2.8315 37 1 0.1739 -4.5128 -3.7560 38 1 -0.5154 -5.9455 -2.9697 39 1 0.5821 -6.4448 -4.4386 40 1 3.9368 -5.1370 -7.9671 41 1 5.9643 -3.8789 -7.3982 42 1 6.4207 -3.2317 -5.0693 43 1 4.8432 -3.8354 -3.2839 44 1 2.7752 -3.7505 -0.6969 45 1 2.2790 -3.9780 1.0039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083133958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:43 Heat of formation + Delta-G solvation = 16.950327 kcal Electronic energy + Delta-G solvation = -30859.675799 eV Core-core repulsion = 26843.498476 eV Total energy + Delta-G solvation = -4016.177323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.66079 -41.70223 -39.51850 -37.97696 -37.56072 -36.07392 -34.41654 -32.96671 -31.70748 -30.54602 -30.20928 -29.56919 -28.72800 -26.60770 -24.78433 -24.20436 -23.83416 -22.73567 -22.32088 -20.83839 -19.97379 -19.09231 -18.83853 -18.25316 -17.75764 -17.32506 -16.96668 -16.88442 -16.41231 -16.16109 -16.06999 -15.68052 -15.44402 -15.20642 -15.11891 -14.88763 -14.65651 -14.30217 -14.13950 -13.88142 -13.57734 -13.33575 -13.01557 -12.90951 -12.86178 -12.62678 -12.60465 -12.43030 -12.15906 -12.11351 -11.96593 -11.85363 -11.65277 -10.96046 -10.77999 -10.70388 -10.39820 -9.54730 -9.27009 -8.94088 -8.72649 -7.90232 -5.26306 0.03922 0.57658 1.08402 1.39468 1.41610 1.50951 1.74521 2.07324 2.26747 2.43702 2.78614 2.93577 3.27026 3.39712 3.64789 3.69021 3.71282 3.80612 3.86759 3.95128 4.11384 4.18650 4.20674 4.37670 4.39206 4.41208 4.44969 4.55372 4.58075 4.70853 4.72629 4.78414 4.86780 5.00898 5.02788 5.10993 5.36407 5.43442 5.46777 5.50784 5.59236 5.62583 5.65622 5.69823 6.11806 6.13911 6.29446 6.44515 6.60775 7.05335 7.21295 7.70872 8.32910 9.18921 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.004611 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.997477 B = 6071.068715 C = 7727.300743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.618 5.618 10 C 0.165 3.835 11 C 0.087 3.913 12 H 0.130 0.870 13 O -0.369 6.369 14 C 0.051 3.949 15 C 0.070 3.930 16 N -0.587 5.587 17 C 0.579 3.421 18 O -0.576 6.576 19 C -0.272 4.272 20 C 0.140 3.860 21 N -0.557 5.557 22 H 0.443 0.557 23 C 0.078 3.922 24 C -0.115 4.115 25 C -0.105 4.105 26 C -0.141 4.141 27 C -0.109 4.109 28 C -0.096 4.096 29 C 0.124 3.876 30 H 0.094 0.906 31 C 0.116 3.884 32 H 0.249 0.751 33 H 0.024 0.976 34 H 0.016 0.984 35 H 0.022 0.978 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.226 0.774 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.135 0.865 43 H 0.088 0.912 44 H 0.051 0.949 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 -15.988 -18.410 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.346 5.346 10 C 0.039 3.961 11 C 0.028 3.972 12 H 0.147 0.853 13 O -0.286 6.286 14 C -0.026 4.026 15 C -0.052 4.052 16 N -0.319 5.319 17 C 0.370 3.630 18 O -0.457 6.457 19 C -0.283 4.283 20 C 0.006 3.994 21 N -0.160 5.160 22 H 0.285 0.715 23 C -0.027 4.027 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.159 4.159 27 C -0.127 4.127 28 C -0.101 4.101 29 C 0.019 3.981 30 H 0.111 0.889 31 C -0.010 4.010 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.170 0.830 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.242 0.758 40 H 0.179 0.821 41 H 0.178 0.822 42 H 0.152 0.848 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.729 -15.959 -18.045 24.100 hybrid contribution 0.787 1.495 0.522 1.768 sum 0.057 -14.464 -17.523 22.722 Atomic orbital electron populations 1.70162 1.05974 1.25362 1.57963 1.25574 0.96688 1.00643 1.02175 0.85118 0.77710 0.79231 0.77535 1.21283 1.21162 1.19808 1.19308 0.90531 0.83863 1.43659 0.91349 1.44447 1.02179 1.00828 1.87110 1.21422 0.83897 0.91760 0.98994 1.22709 0.85537 0.94562 0.94442 0.85265 1.86868 1.36305 1.88438 1.17028 1.22565 1.00154 0.98158 0.81686 1.22239 0.86846 1.02969 0.93160 1.46628 1.08315 1.69733 1.07273 1.17856 0.81942 0.75478 0.87712 1.90692 1.41996 1.51962 1.61003 1.19928 1.00424 1.15889 0.92062 1.22731 0.97949 0.96536 0.82223 1.41455 1.17535 1.47615 1.09403 0.71459 1.18371 0.89904 1.00067 0.94373 1.20469 0.93400 1.01218 0.98426 1.21213 0.97474 0.97610 0.96110 1.21200 0.99790 1.01704 0.93255 1.20613 0.94260 0.98709 0.99164 1.19050 0.95516 1.02157 0.93361 1.21544 0.96485 0.98297 0.81822 0.88862 1.22005 0.96282 0.84493 0.98182 0.94176 0.95756 0.96579 0.95955 0.83034 0.88432 0.86977 0.75786 0.82073 0.82187 0.84751 0.89338 0.93073 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 10.26 21.65 0.22 -58.34 16 2 C -0.06 -3.45 5.48 84.86 0.47 -2.98 16 3 Si 0.98 48.34 29.55 68.60 2.03 50.37 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 7 C -0.24 -14.99 10.25 84.03 0.86 -14.13 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.62 -34.84 3.39 -695.60 -2.36 -37.20 16 10 C 0.16 8.55 5.02 86.63 0.43 8.98 16 11 C 0.09 3.41 3.82 30.85 0.12 3.53 16 12 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 13 O -0.37 -12.57 10.24 -146.21 -1.50 -14.06 16 14 C 0.05 1.41 6.72 71.64 0.48 1.89 16 15 C 0.07 1.66 4.96 86.32 0.43 2.09 16 16 N -0.59 -20.19 3.08 -809.90 -2.50 -22.69 16 17 C 0.58 21.90 6.86 86.51 0.59 22.49 16 18 O -0.58 -26.59 14.43 -4.27 -0.06 -26.65 16 19 C -0.27 -8.23 5.35 -19.02 -0.10 -8.33 16 20 C 0.14 2.39 9.47 83.69 0.79 3.18 16 21 N -0.56 -7.64 5.99 -187.09 -1.12 -8.76 16 22 H 0.44 1.85 8.96 -92.70 -0.83 1.02 16 23 C 0.08 1.71 7.26 38.92 0.28 2.00 16 24 C -0.12 -1.99 10.07 22.37 0.23 -1.77 16 25 C -0.11 -2.01 10.01 22.28 0.22 -1.78 16 26 C -0.14 -3.66 10.03 22.28 0.22 -3.44 16 27 C -0.11 -3.72 10.09 22.41 0.23 -3.50 16 28 C -0.10 -3.06 6.36 -20.08 -0.13 -3.19 16 29 C 0.12 4.83 3.38 45.83 0.16 4.99 16 30 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 31 C 0.12 5.71 6.29 86.83 0.55 6.26 16 32 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.02 1.40 5.74 -2.39 -0.01 1.39 16 34 H 0.02 0.93 7.49 -2.38 -0.02 0.91 16 35 H 0.02 0.79 6.81 -2.39 -0.02 0.78 16 36 H 0.15 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.10 2.14 5.62 -2.38 -0.01 2.13 16 38 H 0.11 1.58 7.08 -2.38 -0.02 1.57 16 39 H 0.23 1.69 6.14 -2.91 -0.02 1.67 16 40 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.09 3.59 8.06 -2.91 -0.02 3.56 16 44 H 0.05 2.78 5.11 -2.39 -0.01 2.77 16 45 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -88.70 353.58 0.76 -87.94 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.22 Total: 13.10 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 5.83 Total: 16.29 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -5.75 Total: -126.99 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.56 Total: -40.71 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -88.70 0.76 -87.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083133958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.890 kcal (2) G-P(sol) polarization free energy of solvation -88.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds