Wall clock time and date at job start Sat Apr 11 2020 06:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99689 * 2 1 4 4 H 1.48506 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47343 * 299.99544 * 3 2 1 6 6 H 1.48500 * 109.47467 * 59.99536 * 3 2 1 7 7 C 1.38805 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00127 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.46781 * 125.36380 * 0.02972 * 9 7 2 11 11 C 1.53905 * 107.62753 * 178.78429 * 10 9 7 12 12 H 1.08998 * 109.52227 * 100.77585 * 11 10 9 13 13 O 1.40854 * 110.30167 * 221.40651 * 11 10 9 14 14 C 1.41322 * 118.30879 * 68.00564 * 13 11 10 15 15 C 1.51965 * 111.60598 * 56.89647 * 14 13 11 16 16 N 1.44963 * 111.93762 * 319.69780 * 15 14 13 17 17 C 1.34780 * 117.33603 * 203.72767 * 16 15 14 18 18 O 1.21577 * 119.99753 * 176.75610 * 17 16 15 19 19 C 1.47649 * 120.00184 * 356.75688 * 17 16 15 20 20 C 1.40205 * 119.97763 * 316.87440 * 19 17 16 21 21 C 1.36312 * 120.67330 * 179.97438 * 20 19 17 22 22 C 1.39375 * 120.23915 * 0.02562 * 21 20 19 23 23 N 1.37394 * 133.25420 * 179.97438 * 22 21 20 24 24 H 0.97002 * 125.00478 * 359.97438 * 23 22 21 25 25 C 1.36855 * 109.98147 * 180.02562 * 23 22 21 26 26 C 1.34188 * 109.96257 * 359.97438 * 25 23 22 27 27 C 1.40869 * 119.63269 * 0.02562 * 22 21 20 28 28 C 1.39153 * 119.97138 * 136.59619 * 19 17 16 29 29 C 1.44547 * 125.32327 * 24.01036 * 16 15 14 30 30 H 1.09001 * 109.64058 * 106.18495 * 29 16 15 31 31 C 1.46877 * 125.36720 * 179.97438 * 9 7 2 32 32 H 0.96995 * 120.00061 * 0.02562 * 1 2 3 33 33 H 1.09002 * 109.81902 * 59.25973 * 10 9 7 34 34 H 1.08995 * 109.88937 * 298.35005 * 10 9 7 35 35 H 1.08998 * 109.05652 * 296.35578 * 14 13 11 36 36 H 1.08998 * 109.00014 * 177.40389 * 14 13 11 37 37 H 1.08998 * 108.99294 * 199.06262 * 15 14 13 38 38 H 1.09002 * 108.98515 * 80.32517 * 15 14 13 39 39 H 1.08007 * 119.66207 * 359.97438 * 20 19 17 40 40 H 1.07998 * 119.88310 * 179.97438 * 21 20 19 41 41 H 1.08004 * 125.02028 * 180.02562 * 25 23 22 42 42 H 1.08003 * 126.54770 * 180.02562 * 26 25 23 43 43 H 1.07992 * 120.30484 * 0.02562 * 28 19 17 44 44 H 1.08996 * 110.06676 * 317.06526 * 31 9 7 45 45 H 1.08997 * 110.06334 * 78.58354 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1357 -2.5253 0.0016 11 6 -0.4626 -4.0289 -0.0281 12 1 -0.7257 -4.3644 0.9750 13 8 -1.5362 -4.2784 -0.9050 14 6 -1.3290 -4.0868 -2.2897 15 6 -0.1711 -4.9261 -2.8037 16 7 0.9384 -4.9470 -1.8711 17 6 2.1617 -5.2131 -2.3704 18 8 3.1348 -5.1848 -1.6422 19 6 2.3200 -5.5391 -3.8017 20 6 1.4159 -6.4100 -4.4261 21 6 1.5484 -6.7202 -5.7468 22 6 2.5891 -6.1733 -6.4953 23 7 2.9693 -6.2966 -7.8098 24 1 2.5158 -6.8422 -8.4714 25 6 4.0828 -5.5374 -8.0478 26 6 4.4569 -4.9078 -6.9233 27 6 3.5047 -5.2977 -5.8794 28 6 3.3630 -4.9770 -4.5315 29 6 0.8389 -4.7115 -0.4484 30 1 0.9522 -5.6537 0.0878 31 6 1.9379 -3.7231 0.0017 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5526 -2.0388 -0.8802 34 1 -0.5505 -2.0746 0.9032 35 1 -1.1153 -3.0342 -2.4753 36 1 -2.2360 -4.3654 -2.8262 37 1 0.1713 -4.5145 -3.7531 38 1 -0.5175 -5.9468 -2.9657 39 1 0.6062 -6.8395 -3.8547 40 1 0.8449 -7.3929 -6.2147 41 1 4.5857 -5.4562 -9.0001 42 1 5.2992 -4.2415 -6.8091 43 1 4.0594 -4.3024 -4.0557 44 1 2.7746 -3.7509 -0.6963 45 1 2.2788 -3.9780 1.0051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083180536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:48 Heat of formation + Delta-G solvation = 48.491827 kcal Electronic energy + Delta-G solvation = -30508.320709 eV Core-core repulsion = 26493.511128 eV Total energy + Delta-G solvation = -4014.809581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.49616 -40.65411 -38.45182 -36.78382 -35.65554 -34.73073 -32.34412 -32.16292 -30.00565 -29.84831 -28.97767 -27.86367 -27.16647 -24.68914 -23.64600 -23.19370 -22.28382 -21.15391 -20.75659 -19.71002 -18.62604 -18.21333 -17.54320 -16.82381 -16.56233 -16.08944 -15.51803 -15.36726 -14.80035 -14.71486 -14.59134 -14.47755 -14.12040 -13.91259 -13.89960 -13.47491 -13.31435 -12.81495 -12.69700 -12.47616 -12.35685 -12.04050 -11.91530 -11.51349 -11.24625 -11.09880 -10.96993 -10.86200 -10.56704 -10.54375 -10.33867 -10.01182 -9.94943 -9.65660 -9.30045 -8.83038 -8.54664 -8.31952 -8.12741 -7.92515 -6.72295 -5.65169 -2.97678 0.97288 1.19219 2.53042 2.88025 2.95274 3.20234 3.44022 3.49925 3.52643 3.84594 4.16825 4.50182 4.55633 4.57593 4.67795 4.86229 4.96555 5.12549 5.16863 5.22431 5.33307 5.40290 5.44107 5.48969 5.59584 5.60773 5.75986 5.77843 5.80136 5.92363 5.94107 6.07001 6.13883 6.19210 6.36176 6.37338 6.46865 6.55371 6.63412 6.91616 6.93052 7.26355 7.26970 7.47478 7.57517 7.63026 7.79793 7.96352 8.31656 8.48342 9.28970 9.89465 10.53156 11.46394 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003763 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.955417 B = 7439.808368 C = 8693.701156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.153 3.847 11 C 0.069 3.931 12 H 0.109 0.891 13 O -0.371 6.371 14 C 0.057 3.943 15 C 0.079 3.921 16 N -0.579 5.579 17 C 0.556 3.444 18 O -0.522 6.522 19 C -0.152 4.152 20 C -0.071 4.071 21 C -0.137 4.137 22 C 0.110 3.890 23 N -0.595 5.595 24 H 0.415 0.585 25 C 0.041 3.959 26 C -0.191 4.191 27 C -0.119 4.119 28 C -0.007 4.007 29 C 0.109 3.891 30 H 0.072 0.928 31 C 0.108 3.892 32 H 0.250 0.750 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.171 0.829 42 H 0.149 0.851 43 H 0.133 0.867 44 H 0.088 0.912 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 -15.653 -16.484 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.028 3.972 11 C 0.010 3.990 12 H 0.127 0.873 13 O -0.288 6.288 14 C -0.021 4.021 15 C -0.044 4.044 16 N -0.312 5.312 17 C 0.345 3.655 18 O -0.399 6.399 19 C -0.157 4.157 20 C -0.090 4.090 21 C -0.158 4.158 22 C 0.002 3.998 23 N -0.198 5.198 24 H 0.251 0.749 25 C -0.084 4.084 26 C -0.216 4.216 27 C -0.124 4.124 28 C -0.026 4.026 29 C 0.005 3.995 30 H 0.090 0.910 31 C -0.018 4.018 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.188 0.812 42 H 0.167 0.833 43 H 0.151 0.849 44 H 0.106 0.894 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.773 -15.515 -16.101 22.374 hybrid contribution 0.385 0.789 -0.525 1.023 sum 1.157 -14.726 -16.627 22.241 Atomic orbital electron populations 1.69962 1.04791 1.24756 1.57805 1.24775 0.95728 0.97572 1.02570 0.86046 0.78816 0.83839 0.77148 1.20491 1.21890 1.21798 1.19117 0.90526 0.82235 1.42832 0.90340 1.44243 1.01103 1.00310 1.87269 1.21660 0.85297 0.88085 1.02207 1.22988 0.84750 0.98633 0.92636 0.87290 1.86857 1.37262 1.89006 1.15705 1.22260 0.97235 0.99841 0.82729 1.21863 0.88609 1.00601 0.93349 1.46478 1.07274 1.69576 1.07849 1.18312 0.82873 0.77083 0.87202 1.90686 1.38738 1.50712 1.59793 1.19610 0.98876 1.03310 0.93882 1.20839 0.97819 0.96635 0.93723 1.19614 0.98352 1.03969 0.93873 1.18401 0.97383 0.99536 0.84510 1.41751 1.26376 1.42683 1.08959 0.74857 1.21799 0.90130 0.96415 1.00047 1.21789 1.02317 1.06042 0.91459 1.19127 0.97905 1.01454 0.93908 1.20627 0.94897 0.95947 0.91167 1.21843 0.98958 0.98944 0.79752 0.90966 1.22197 0.95956 0.84470 0.99134 0.93914 0.92658 0.93106 0.92011 0.88041 0.89660 0.91775 0.84743 0.85872 0.81213 0.83320 0.84875 0.89443 0.95761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 10.26 55.49 0.57 -27.03 16 2 C -0.01 -0.32 5.48 -17.43 -0.10 -0.41 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.22 -6.35 10.25 -15.06 -0.15 -6.51 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -16.06 3.39 -171.22 -0.58 -16.64 16 10 C 0.15 3.80 5.02 -3.42 -0.02 3.79 16 11 C 0.07 1.36 3.82 -26.33 -0.10 1.26 16 12 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 13 O -0.37 -6.73 10.24 -34.45 -0.35 -7.08 16 14 C 0.06 0.87 6.72 36.63 0.25 1.12 16 15 C 0.08 1.12 4.89 -5.39 -0.03 1.09 16 16 N -0.58 -10.17 3.08 -169.71 -0.52 -10.69 16 17 C 0.56 10.10 6.76 -12.42 -0.08 10.02 16 18 O -0.52 -11.08 13.81 5.30 0.07 -11.01 16 19 C -0.15 -2.28 4.80 -104.98 -0.50 -2.78 16 20 C -0.07 -0.82 7.70 -39.54 -0.30 -1.13 16 21 C -0.14 -1.38 10.00 -39.85 -0.40 -1.78 16 22 C 0.11 1.20 7.27 -83.95 -0.61 0.59 16 23 N -0.59 -4.63 6.05 -10.61 -0.06 -4.70 16 24 H 0.41 1.84 8.96 -40.82 -0.37 1.47 16 25 C 0.04 0.32 11.81 -16.74 -0.20 0.12 16 26 C -0.19 -1.98 11.09 -37.65 -0.42 -2.40 16 27 C -0.12 -1.54 6.36 -105.15 -0.67 -2.20 16 28 C -0.01 -0.10 9.72 -38.86 -0.38 -0.48 16 29 C 0.11 2.12 3.46 -68.25 -0.24 1.89 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 31 C 0.11 2.51 6.29 -3.04 -0.02 2.49 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.93 16 33 H 0.06 1.52 5.74 -51.93 -0.30 1.22 16 34 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 35 H 0.06 1.12 6.81 -51.93 -0.35 0.77 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.15 6.34 -51.93 -0.33 0.83 16 38 H 0.06 0.72 6.27 -51.93 -0.33 0.40 16 39 H 0.13 1.34 5.71 -52.48 -0.30 1.04 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 42 H 0.15 1.32 8.06 -52.48 -0.42 0.89 16 43 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 44 H 0.09 2.18 4.78 -52.58 -0.25 1.93 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -35.58 352.20 -10.10 -45.68 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.54 Total: 3.71 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -3.97 Total: 4.67 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.60 Total: -59.06 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.28 Total: -18.09 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.58 -10.10 -45.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083180536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.176 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds