Wall clock time and date at job start Sat Apr 11 2020 06:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99689 * 2 1 4 4 H 1.48506 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47343 * 299.99544 * 3 2 1 6 6 H 1.48500 * 109.47467 * 59.99536 * 3 2 1 7 7 C 1.38805 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00127 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00199 * 359.97438 * 7 2 1 10 10 C 1.46781 * 125.36380 * 0.02972 * 9 7 2 11 11 C 1.53905 * 107.62753 * 178.78429 * 10 9 7 12 12 H 1.08998 * 109.52227 * 100.77585 * 11 10 9 13 13 O 1.40854 * 110.30167 * 221.40651 * 11 10 9 14 14 C 1.41322 * 118.30879 * 68.00564 * 13 11 10 15 15 C 1.51965 * 111.60598 * 56.89647 * 14 13 11 16 16 N 1.44963 * 111.93762 * 319.69780 * 15 14 13 17 17 C 1.34780 * 117.33603 * 203.72767 * 16 15 14 18 18 O 1.21577 * 119.99753 * 176.75610 * 17 16 15 19 19 C 1.47649 * 120.00184 * 356.75688 * 17 16 15 20 20 C 1.40205 * 119.97763 * 316.87440 * 19 17 16 21 21 C 1.36312 * 120.67330 * 179.97438 * 20 19 17 22 22 C 1.39375 * 120.23915 * 0.02562 * 21 20 19 23 23 N 1.37394 * 133.25420 * 179.97438 * 22 21 20 24 24 H 0.97002 * 125.00478 * 359.97438 * 23 22 21 25 25 C 1.36855 * 109.98147 * 180.02562 * 23 22 21 26 26 C 1.34188 * 109.96257 * 359.97438 * 25 23 22 27 27 C 1.40869 * 119.63269 * 0.02562 * 22 21 20 28 28 C 1.39153 * 119.97138 * 136.59619 * 19 17 16 29 29 C 1.44547 * 125.32327 * 24.01036 * 16 15 14 30 30 H 1.09001 * 109.64058 * 106.18495 * 29 16 15 31 31 C 1.46877 * 125.36720 * 179.97438 * 9 7 2 32 32 H 0.96995 * 120.00061 * 0.02562 * 1 2 3 33 33 H 1.09002 * 109.81902 * 59.25973 * 10 9 7 34 34 H 1.08995 * 109.88937 * 298.35005 * 10 9 7 35 35 H 1.08998 * 109.05652 * 296.35578 * 14 13 11 36 36 H 1.08998 * 109.00014 * 177.40389 * 14 13 11 37 37 H 1.08998 * 108.99294 * 199.06262 * 15 14 13 38 38 H 1.09002 * 108.98515 * 80.32517 * 15 14 13 39 39 H 1.08007 * 119.66207 * 359.97438 * 20 19 17 40 40 H 1.07998 * 119.88310 * 179.97438 * 21 20 19 41 41 H 1.08004 * 125.02028 * 180.02562 * 25 23 22 42 42 H 1.08003 * 126.54770 * 180.02562 * 26 25 23 43 43 H 1.07992 * 120.30484 * 0.02562 * 28 19 17 44 44 H 1.08996 * 110.06676 * 317.06526 * 31 9 7 45 45 H 1.08997 * 110.06334 * 78.58354 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1357 -2.5253 0.0016 11 6 -0.4626 -4.0289 -0.0281 12 1 -0.7257 -4.3644 0.9750 13 8 -1.5362 -4.2784 -0.9050 14 6 -1.3290 -4.0868 -2.2897 15 6 -0.1711 -4.9261 -2.8037 16 7 0.9384 -4.9470 -1.8711 17 6 2.1617 -5.2131 -2.3704 18 8 3.1348 -5.1848 -1.6422 19 6 2.3200 -5.5391 -3.8017 20 6 1.4159 -6.4100 -4.4261 21 6 1.5484 -6.7202 -5.7468 22 6 2.5891 -6.1733 -6.4953 23 7 2.9693 -6.2966 -7.8098 24 1 2.5158 -6.8422 -8.4714 25 6 4.0828 -5.5374 -8.0478 26 6 4.4569 -4.9078 -6.9233 27 6 3.5047 -5.2977 -5.8794 28 6 3.3630 -4.9770 -4.5315 29 6 0.8389 -4.7115 -0.4484 30 1 0.9522 -5.6537 0.0878 31 6 1.9379 -3.7231 0.0017 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5526 -2.0388 -0.8802 34 1 -0.5505 -2.0746 0.9032 35 1 -1.1153 -3.0342 -2.4753 36 1 -2.2360 -4.3654 -2.8262 37 1 0.1713 -4.5145 -3.7531 38 1 -0.5175 -5.9468 -2.9657 39 1 0.6062 -6.8395 -3.8547 40 1 0.8449 -7.3929 -6.2147 41 1 4.5857 -5.4562 -9.0001 42 1 5.2992 -4.2415 -6.8091 43 1 4.0594 -4.3024 -4.0557 44 1 2.7746 -3.7509 -0.6963 45 1 2.2788 -3.9780 1.0051 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083180536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:47 Heat of formation + Delta-G solvation = 23.370368 kcal Electronic energy + Delta-G solvation = -30509.410058 eV Core-core repulsion = 26493.511128 eV Total energy + Delta-G solvation = -4015.898929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.48408 -41.89677 -39.87316 -37.96509 -37.28994 -36.13718 -34.31861 -32.99325 -31.74385 -30.90645 -29.80680 -29.54253 -28.80401 -26.61024 -24.87955 -24.55276 -23.23188 -22.61640 -21.78108 -21.16322 -20.04671 -19.14803 -19.04374 -18.32583 -18.19114 -17.25050 -16.92259 -16.84376 -16.46878 -15.98491 -15.85245 -15.66980 -15.40632 -15.25488 -15.04827 -14.82093 -14.39869 -14.13786 -14.06277 -13.92861 -13.64386 -13.43342 -13.35050 -13.01680 -12.88034 -12.86183 -12.45707 -12.43109 -12.22499 -12.10424 -11.88006 -11.81998 -11.66610 -10.90571 -10.78920 -10.74448 -10.34470 -9.56891 -9.21207 -8.89547 -8.72608 -7.89223 -5.25065 0.01068 0.30349 1.40566 1.41854 1.52891 1.61839 1.81089 1.90970 2.24780 2.44575 2.75582 2.87389 3.27779 3.31295 3.60799 3.70041 3.73159 3.77055 3.90505 3.94215 4.11916 4.11979 4.28329 4.30332 4.38897 4.44104 4.45899 4.56199 4.68842 4.73200 4.75301 4.86877 4.95074 4.99961 5.07191 5.11979 5.32756 5.38404 5.43530 5.48114 5.60480 5.63516 5.67277 5.73133 6.09607 6.15248 6.23335 6.41759 6.72961 7.05327 7.10756 7.72523 8.34576 9.20185 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003763 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.955417 B = 7439.808368 C = 8693.701156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.978 3.022 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.619 5.619 10 C 0.164 3.836 11 C 0.086 3.914 12 H 0.130 0.870 13 O -0.369 6.369 14 C 0.051 3.949 15 C 0.077 3.923 16 N -0.584 5.584 17 C 0.551 3.449 18 O -0.567 6.567 19 C -0.168 4.168 20 C -0.075 4.075 21 C -0.118 4.118 22 C 0.104 3.896 23 N -0.578 5.578 24 H 0.436 0.564 25 C 0.074 3.926 26 C -0.235 4.235 27 C -0.143 4.143 28 C -0.037 4.037 29 C 0.120 3.880 30 H 0.096 0.904 31 C 0.105 3.895 32 H 0.248 0.752 33 H 0.024 0.976 34 H 0.016 0.984 35 H 0.023 0.977 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.216 0.784 42 H 0.151 0.849 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -18.125 -19.822 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.346 5.346 10 C 0.038 3.962 11 C 0.026 3.974 12 H 0.148 0.852 13 O -0.286 6.286 14 C -0.025 4.025 15 C -0.045 4.045 16 N -0.316 5.316 17 C 0.341 3.659 18 O -0.448 6.448 19 C -0.172 4.172 20 C -0.094 4.094 21 C -0.138 4.138 22 C -0.006 4.006 23 N -0.182 5.182 24 H 0.276 0.724 25 C -0.053 4.053 26 C -0.259 4.259 27 C -0.148 4.148 28 C -0.057 4.057 29 C 0.015 3.985 30 H 0.114 0.886 31 C -0.021 4.021 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.168 0.832 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.174 0.826 40 H 0.184 0.816 41 H 0.233 0.767 42 H 0.168 0.832 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -0.512 -18.027 -19.483 26.549 hybrid contribution 0.837 1.563 0.353 1.808 sum 0.324 -16.464 -19.131 25.242 Atomic orbital electron populations 1.70177 1.06021 1.25250 1.58130 1.25596 0.96701 1.00727 1.02295 0.85021 0.77923 0.79395 0.77067 1.19653 1.21498 1.21267 1.19377 0.90625 0.83831 1.43384 0.91131 1.44478 1.02110 1.00971 1.87086 1.21423 0.84073 0.91717 0.98964 1.22723 0.85560 0.94636 0.94447 0.85203 1.86870 1.36342 1.88451 1.16927 1.22567 1.00076 0.98155 0.81709 1.22144 0.86871 1.02924 0.92514 1.46624 1.08328 1.69119 1.07493 1.18924 0.82346 0.76089 0.88494 1.90644 1.40097 1.52820 1.61203 1.19457 1.00469 1.05319 0.91982 1.20977 0.97696 0.96126 0.94631 1.20012 0.97947 1.02859 0.92966 1.18591 0.97182 0.99012 0.85787 1.41812 1.26058 1.42167 1.08185 0.72379 1.22444 0.88787 0.93450 1.00590 1.22033 1.03309 1.08378 0.92166 1.19398 0.99560 1.02421 0.93458 1.20521 0.95318 0.97108 0.92716 1.21643 0.96737 0.98578 0.81527 0.88579 1.22255 0.96959 0.84213 0.98646 0.94240 0.95806 0.96615 0.95827 0.83212 0.89067 0.87221 0.82568 0.81642 0.76713 0.83175 0.87915 0.91321 0.96083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.87 10.26 21.65 0.22 -58.65 16 2 C -0.06 -3.61 5.48 84.86 0.47 -3.14 16 3 Si 0.98 48.38 29.55 68.60 2.03 50.41 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.24 -14.88 10.25 84.03 0.86 -14.02 16 8 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -34.91 3.39 -695.63 -2.36 -37.26 16 10 C 0.16 8.56 5.02 86.63 0.43 8.99 16 11 C 0.09 3.40 3.82 30.85 0.12 3.51 16 12 H 0.13 4.60 8.14 -2.39 -0.02 4.58 16 13 O -0.37 -12.88 10.24 -146.19 -1.50 -14.37 16 14 C 0.05 1.50 6.72 71.64 0.48 1.99 16 15 C 0.08 2.03 4.89 86.33 0.42 2.45 16 16 N -0.58 -20.42 3.08 -809.10 -2.49 -22.91 16 17 C 0.55 20.69 6.76 86.73 0.59 21.28 16 18 O -0.57 -25.73 13.81 -3.96 -0.05 -25.78 16 19 C -0.17 -5.10 4.80 -20.09 -0.10 -5.20 16 20 C -0.07 -1.55 7.70 22.30 0.17 -1.38 16 21 C -0.12 -1.89 10.00 22.09 0.22 -1.67 16 22 C 0.10 1.97 7.27 39.19 0.28 2.25 16 23 N -0.58 -6.53 6.05 -187.49 -1.13 -7.67 16 24 H 0.44 1.50 8.96 -92.71 -0.83 0.67 16 25 C 0.07 0.86 11.81 82.98 0.98 1.84 16 26 C -0.23 -4.68 11.09 23.52 0.26 -4.41 16 27 C -0.14 -3.68 6.36 -20.21 -0.13 -3.81 16 28 C -0.04 -1.17 9.72 22.74 0.22 -0.95 16 29 C 0.12 4.69 3.46 45.82 0.16 4.85 16 30 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 31 C 0.10 5.11 6.29 86.82 0.55 5.66 16 32 H 0.25 14.89 8.31 -92.71 -0.77 14.11 16 33 H 0.02 1.38 5.74 -2.39 -0.01 1.37 16 34 H 0.02 0.91 7.49 -2.39 -0.02 0.90 16 35 H 0.02 0.87 6.81 -2.39 -0.02 0.85 16 36 H 0.15 2.93 8.14 -2.39 -0.02 2.91 16 37 H 0.09 2.32 6.34 -2.39 -0.02 2.31 16 38 H 0.11 1.95 6.27 -2.39 -0.01 1.94 16 39 H 0.16 2.45 5.71 -2.91 -0.02 2.43 16 40 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 41 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 42 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.10 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.07 3.68 4.78 -12.70 -0.06 3.62 16 45 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -85.21 352.20 0.87 -84.34 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.17 Total: 13.67 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 5.99 Total: 18.23 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -5.76 Total: -126.49 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.55 Total: -40.16 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -85.21 0.87 -84.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083180536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.707 kcal (2) G-P(sol) polarization free energy of solvation -85.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds