Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86805 * 120.00245 * 2 1 4 4 H 1.48502 * 109.47072 * 95.67913 * 3 2 1 5 5 H 1.48493 * 109.47241 * 215.68213 * 3 2 1 6 6 H 1.48503 * 109.46826 * 335.68494 * 3 2 1 7 7 C 1.38813 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00293 * 31.91986 * 7 2 1 9 9 N 1.36942 * 119.99967 * 211.92034 * 7 2 1 10 10 C 1.46781 * 125.36179 * 356.19063 * 9 7 2 11 11 C 1.53920 * 107.62081 * 178.65868 * 10 9 7 12 12 H 1.09004 * 108.57495 * 101.53909 * 11 10 9 13 13 O 1.40852 * 110.46551 * 221.67524 * 11 10 9 14 14 C 1.41325 * 118.30831 * 68.18661 * 13 11 10 15 15 C 1.51956 * 111.60341 * 56.90069 * 14 13 11 16 16 N 1.44964 * 111.94170 * 319.69771 * 15 14 13 17 17 C 1.34776 * 117.33869 * 203.73439 * 16 15 14 18 18 O 1.21608 * 120.00168 * 187.94464 * 17 16 15 19 19 C 1.47382 * 120.00271 * 7.94381 * 17 16 15 20 20 C 1.39314 * 120.33843 * 328.76210 * 19 17 16 21 21 C 1.38278 * 120.19810 * 179.80433 * 20 19 17 22 22 C 1.38058 * 120.88181 * 0.46113 * 21 20 19 23 23 C 1.38979 * 120.27083 * 359.77556 * 22 21 20 24 24 N 1.37788 * 133.37584 * 180.02562 * 23 22 21 25 25 H 0.97000 * 125.07446 * 0.02694 * 24 23 22 26 26 C 1.36550 * 109.85655 * 180.02562 * 24 23 22 27 27 C 1.34547 * 109.89519 * 359.97438 * 26 24 23 28 28 C 1.40672 * 119.51704 * 0.02562 * 23 22 21 29 29 C 1.44547 * 125.32497 * 23.75034 * 16 15 14 30 30 H 1.09005 * 109.64012 * 105.96525 * 29 16 15 31 31 C 1.46870 * 125.36602 * 176.49051 * 9 7 2 32 32 H 0.97001 * 120.00068 * 174.97625 * 1 2 3 33 33 H 1.08999 * 109.82202 * 298.33775 * 10 9 7 34 34 H 1.09004 * 109.81881 * 59.28463 * 10 9 7 35 35 H 1.09000 * 109.05300 * 296.35647 * 14 13 11 36 36 H 1.08997 * 108.99480 * 177.41033 * 14 13 11 37 37 H 1.09002 * 108.99214 * 199.06442 * 15 14 13 38 38 H 1.08998 * 108.92499 * 80.28310 * 15 14 13 39 39 H 1.08004 * 119.90716 * 0.02562 * 20 19 17 40 40 H 1.08001 * 119.56186 * 180.24267 * 21 20 19 41 41 H 1.07997 * 119.86335 * 179.80663 * 22 21 20 42 42 H 1.07994 * 125.05389 * 180.02562 * 26 24 23 43 43 H 1.07995 * 126.49830 * 179.97438 * 27 26 24 44 44 H 1.09006 * 110.06650 * 317.03600 * 31 9 7 45 45 H 1.09003 * 110.06592 * 78.55610 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6177 1.9771 1.3932 5 1 3.4825 1.4778 -0.8166 6 1 1.3927 2.6844 -0.5765 7 6 2.0101 -1.2022 -0.0005 8 1 1.5927 -2.0666 -0.4954 9 7 3.2242 -1.2921 0.6265 10 6 3.9356 -0.1778 1.2642 11 6 5.2356 -0.7392 1.8676 12 1 6.0629 -0.4892 1.2033 13 8 5.4684 -0.1824 3.1402 14 6 4.5936 -0.5303 4.1942 15 6 4.5404 -2.0344 4.4038 16 7 4.5313 -2.7565 3.1468 17 6 4.0073 -3.9982 3.1501 18 8 4.1042 -4.7017 2.1630 19 6 3.3167 -4.5035 4.3502 20 6 3.7100 -4.0817 5.6183 21 6 3.0575 -4.5546 6.7420 22 6 2.0169 -5.4550 6.6308 23 6 1.6047 -5.8983 5.3798 24 7 0.6231 -6.7697 4.9608 25 1 0.0152 -7.2479 5.5462 26 6 0.6335 -6.8596 3.5983 27 6 1.5984 -6.0687 3.0946 28 6 2.2559 -5.4232 4.2270 29 6 5.0386 -2.2535 1.8903 30 1 5.9837 -2.7428 1.6545 31 6 4.0226 -2.5175 0.7614 32 1 -0.4850 -0.8368 -0.0736 33 1 4.1693 0.5850 0.5215 34 1 3.3188 0.2507 2.0543 35 1 3.5926 -0.1681 3.9600 36 1 4.9380 -0.0550 5.1127 37 1 3.6379 -2.2831 4.9622 38 1 5.4113 -2.3416 4.9828 39 1 4.5247 -3.3805 5.7240 40 1 3.3683 -4.2177 7.7200 41 1 1.5209 -5.8160 7.5196 42 1 -0.0341 -7.4735 3.0120 43 1 1.8410 -5.9369 2.0505 44 1 3.3787 -3.3561 1.0263 45 1 4.5461 -2.7273 -0.1714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083202046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = 69.834108 kcal Electronic energy + Delta-G solvation = -31157.045761 eV Core-core repulsion = 27143.161650 eV Total energy + Delta-G solvation = -4013.884110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.54139 -40.70025 -38.51989 -37.03021 -36.01314 -34.90398 -32.65895 -31.91420 -30.54048 -29.57558 -29.05554 -28.10009 -27.72711 -24.57541 -23.77437 -23.43857 -21.79041 -21.39304 -20.48218 -20.21167 -19.08991 -18.01723 -17.39343 -17.09895 -16.91470 -16.29921 -15.71139 -15.46693 -15.30956 -15.05665 -14.65863 -14.43169 -14.10764 -14.06786 -13.91841 -13.40732 -13.11040 -12.99107 -12.85897 -12.74165 -12.39474 -12.11528 -11.91714 -11.75456 -11.47182 -11.37942 -11.14618 -11.06226 -10.81375 -10.52939 -10.22709 -9.80139 -9.75887 -9.58959 -9.24888 -9.01256 -8.37780 -8.28343 -8.21391 -7.74710 -6.99275 -6.33398 -3.06203 0.71177 1.47724 2.70067 2.89205 3.04557 3.11331 3.44979 3.53046 3.70164 3.83227 3.96898 4.42721 4.63407 4.69759 4.72307 4.79366 4.87198 4.96692 5.05557 5.07912 5.20282 5.25632 5.27637 5.31394 5.50852 5.51927 5.53077 5.64152 5.68361 5.75321 5.82492 5.88506 6.02008 6.08184 6.28403 6.30483 6.35935 6.51153 6.58541 6.66352 6.71673 6.75599 7.01659 7.06133 7.42938 7.44634 7.57260 7.80536 8.37951 8.40993 9.10512 9.67478 10.32223 11.18040 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.004551 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.005814 B = 6150.368011 C = 7173.941363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.019 4.019 3 Si 1.062 2.938 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.299 1.299 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.078 3.922 11 C 0.089 3.911 12 H 0.119 0.881 13 O -0.369 6.369 14 C 0.051 3.949 15 C 0.063 3.937 16 N -0.582 5.582 17 C 0.558 3.442 18 O -0.519 6.519 19 C -0.081 4.081 20 C -0.137 4.137 21 C -0.111 4.111 22 C -0.109 4.109 23 C 0.086 3.914 24 N -0.597 5.597 25 H 0.415 0.585 26 C 0.048 3.952 27 C -0.183 4.183 28 C -0.056 4.056 29 C 0.113 3.887 30 H 0.080 0.920 31 C 0.123 3.877 32 H 0.263 0.737 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.149 0.851 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.173 0.827 43 H 0.154 0.846 44 H 0.077 0.923 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.007 -10.567 16.243 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.220 4.220 3 Si 0.895 3.105 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.459 4.459 8 H 0.097 0.903 9 N -0.332 5.332 10 C -0.047 4.047 11 C 0.030 3.970 12 H 0.137 0.863 13 O -0.286 6.286 14 C -0.026 4.026 15 C -0.060 4.060 16 N -0.315 5.315 17 C 0.347 3.653 18 O -0.396 6.396 19 C -0.084 4.084 20 C -0.156 4.156 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.021 4.021 24 N -0.201 5.201 25 H 0.251 0.749 26 C -0.078 4.078 27 C -0.207 4.207 28 C -0.062 4.062 29 C 0.009 3.991 30 H 0.098 0.902 31 C -0.003 4.003 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.190 0.810 43 H 0.171 0.829 44 H 0.095 0.905 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.853 -9.206 15.766 19.501 hybrid contribution -0.393 -1.973 0.056 2.013 sum 6.459 -11.179 15.822 20.422 Atomic orbital electron populations 1.70907 1.05948 1.30079 1.48322 1.25605 0.96034 1.00762 0.99558 0.83908 0.73953 0.76346 0.76249 1.22102 1.22087 1.22699 1.19928 0.92552 0.98891 1.34508 0.90323 1.44564 1.20729 1.02324 1.65630 1.22291 0.92363 0.93036 0.97050 1.22532 0.99515 0.90511 0.84468 0.86308 1.86887 1.54496 1.69802 1.17395 1.22412 0.95956 0.93237 0.90996 1.22533 1.02774 0.94201 0.86509 1.46519 1.61034 1.15204 1.08784 1.18206 0.78294 0.81304 0.87488 1.90731 1.57799 1.56463 1.34611 1.19305 0.97160 0.98630 0.93321 1.21984 1.01656 1.00724 0.91220 1.20705 0.96194 0.97635 0.98499 1.20134 0.99133 0.99877 0.93839 1.18154 0.93144 0.96111 0.94703 1.41684 1.31274 1.40240 1.06877 0.74864 1.21923 1.01048 1.02378 0.82436 1.21901 0.98630 1.01271 0.98927 1.18936 0.96323 0.97870 0.93099 1.21634 0.98102 0.95135 0.84261 0.90222 1.21849 0.92963 0.91991 0.93522 0.92676 0.94094 0.93473 0.92135 0.87403 0.87817 0.91042 0.83347 0.85155 0.86100 0.81004 0.82871 0.90476 0.95206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.08 13.70 55.49 0.76 -28.32 16 2 C -0.02 -0.56 5.44 -17.43 -0.09 -0.66 16 3 Si 1.06 27.46 24.64 -169.99 -4.19 23.27 16 4 H -0.29 -7.19 6.34 56.52 0.36 -6.83 16 5 H -0.29 -7.21 6.43 56.52 0.36 -6.85 16 6 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 7 C -0.33 -9.89 10.39 -15.06 -0.16 -10.05 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -15.61 3.37 -171.43 -0.58 -16.19 16 10 C 0.08 1.79 4.49 -3.41 -0.02 1.77 16 11 C 0.09 1.61 3.82 -26.39 -0.10 1.51 16 12 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 13 O -0.37 -6.08 10.24 -34.45 -0.35 -6.43 16 14 C 0.05 0.72 6.72 36.63 0.25 0.96 16 15 C 0.06 0.84 4.66 -5.40 -0.03 0.81 16 16 N -0.58 -10.03 3.09 -170.11 -0.53 -10.55 16 17 C 0.56 10.28 6.65 -12.54 -0.08 10.20 16 18 O -0.52 -10.90 13.36 5.27 0.07 -10.83 16 19 C -0.08 -1.29 5.47 -104.75 -0.57 -1.86 16 20 C -0.14 -1.65 7.42 -39.17 -0.29 -1.94 16 21 C -0.11 -1.12 9.99 -39.63 -0.40 -1.51 16 22 C -0.11 -1.14 10.05 -39.37 -0.40 -1.54 16 23 C 0.09 1.11 7.27 -83.99 -0.61 0.50 16 24 N -0.60 -6.21 6.06 -10.66 -0.06 -6.28 16 25 H 0.41 2.73 8.96 -40.82 -0.37 2.36 16 26 C 0.05 0.56 11.82 -16.76 -0.20 0.36 16 27 C -0.18 -2.87 10.42 -37.78 -0.39 -3.27 16 28 C -0.06 -0.91 6.11 -104.85 -0.64 -1.55 16 29 C 0.11 2.10 3.33 -68.51 -0.23 1.87 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 C 0.12 2.78 6.29 -3.24 -0.02 2.76 16 32 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16 33 H 0.04 0.97 4.46 -51.93 -0.23 0.74 16 34 H 0.05 1.16 5.12 -51.93 -0.27 0.89 16 35 H 0.06 0.99 6.84 -51.93 -0.35 0.64 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.32 4.92 -51.93 -0.26 1.06 16 38 H 0.07 0.74 6.83 -51.93 -0.35 0.39 16 39 H 0.15 1.46 4.16 -52.48 -0.22 1.24 16 40 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.15 2.64 7.66 -52.49 -0.40 2.24 16 44 H 0.08 1.91 5.19 -51.93 -0.27 1.64 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -37.41 342.34 -9.03 -46.43 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.33 Total: 5.37 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -3.98 Total: -1.64 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.41 Total: -61.34 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.28 Total: -17.26 kcal Atomic # 14 Polarization: 27.46 SS G_CDS: -4.19 Total: 23.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.41 -9.03 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083202046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.268 kcal (2) G-P(sol) polarization free energy of solvation -37.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds