Wall clock time and date at job start Sat Apr 11 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86805 * 120.00245 * 2 1 4 4 H 1.48502 * 109.47072 * 95.67913 * 3 2 1 5 5 H 1.48493 * 109.47241 * 215.68213 * 3 2 1 6 6 H 1.48503 * 109.46826 * 335.68494 * 3 2 1 7 7 C 1.38813 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00293 * 31.91986 * 7 2 1 9 9 N 1.36942 * 119.99967 * 211.92034 * 7 2 1 10 10 C 1.46781 * 125.36179 * 356.19063 * 9 7 2 11 11 C 1.53920 * 107.62081 * 178.65868 * 10 9 7 12 12 H 1.09004 * 108.57495 * 101.53909 * 11 10 9 13 13 O 1.40852 * 110.46551 * 221.67524 * 11 10 9 14 14 C 1.41325 * 118.30831 * 68.18661 * 13 11 10 15 15 C 1.51956 * 111.60341 * 56.90069 * 14 13 11 16 16 N 1.44964 * 111.94170 * 319.69771 * 15 14 13 17 17 C 1.34776 * 117.33869 * 203.73439 * 16 15 14 18 18 O 1.21608 * 120.00168 * 187.94464 * 17 16 15 19 19 C 1.47382 * 120.00271 * 7.94381 * 17 16 15 20 20 C 1.39314 * 120.33843 * 328.76210 * 19 17 16 21 21 C 1.38278 * 120.19810 * 179.80433 * 20 19 17 22 22 C 1.38058 * 120.88181 * 0.46113 * 21 20 19 23 23 C 1.38979 * 120.27083 * 359.77556 * 22 21 20 24 24 N 1.37788 * 133.37584 * 180.02562 * 23 22 21 25 25 H 0.97000 * 125.07446 * 0.02694 * 24 23 22 26 26 C 1.36550 * 109.85655 * 180.02562 * 24 23 22 27 27 C 1.34547 * 109.89519 * 359.97438 * 26 24 23 28 28 C 1.40672 * 119.51704 * 0.02562 * 23 22 21 29 29 C 1.44547 * 125.32497 * 23.75034 * 16 15 14 30 30 H 1.09005 * 109.64012 * 105.96525 * 29 16 15 31 31 C 1.46870 * 125.36602 * 176.49051 * 9 7 2 32 32 H 0.97001 * 120.00068 * 174.97625 * 1 2 3 33 33 H 1.08999 * 109.82202 * 298.33775 * 10 9 7 34 34 H 1.09004 * 109.81881 * 59.28463 * 10 9 7 35 35 H 1.09000 * 109.05300 * 296.35647 * 14 13 11 36 36 H 1.08997 * 108.99480 * 177.41033 * 14 13 11 37 37 H 1.09002 * 108.99214 * 199.06442 * 15 14 13 38 38 H 1.08998 * 108.92499 * 80.28310 * 15 14 13 39 39 H 1.08004 * 119.90716 * 0.02562 * 20 19 17 40 40 H 1.08001 * 119.56186 * 180.24267 * 21 20 19 41 41 H 1.07997 * 119.86335 * 179.80663 * 22 21 20 42 42 H 1.07994 * 125.05389 * 180.02562 * 26 24 23 43 43 H 1.07995 * 126.49830 * 179.97438 * 27 26 24 44 44 H 1.09006 * 110.06650 * 317.03600 * 31 9 7 45 45 H 1.09003 * 110.06592 * 78.55610 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6177 1.9771 1.3932 5 1 3.4825 1.4778 -0.8166 6 1 1.3927 2.6844 -0.5765 7 6 2.0101 -1.2022 -0.0005 8 1 1.5927 -2.0666 -0.4954 9 7 3.2242 -1.2921 0.6265 10 6 3.9356 -0.1778 1.2642 11 6 5.2356 -0.7392 1.8676 12 1 6.0629 -0.4892 1.2033 13 8 5.4684 -0.1824 3.1402 14 6 4.5936 -0.5303 4.1942 15 6 4.5404 -2.0344 4.4038 16 7 4.5313 -2.7565 3.1468 17 6 4.0073 -3.9982 3.1501 18 8 4.1042 -4.7017 2.1630 19 6 3.3167 -4.5035 4.3502 20 6 3.7100 -4.0817 5.6183 21 6 3.0575 -4.5546 6.7420 22 6 2.0169 -5.4550 6.6308 23 6 1.6047 -5.8983 5.3798 24 7 0.6231 -6.7697 4.9608 25 1 0.0152 -7.2479 5.5462 26 6 0.6335 -6.8596 3.5983 27 6 1.5984 -6.0687 3.0946 28 6 2.2559 -5.4232 4.2270 29 6 5.0386 -2.2535 1.8903 30 1 5.9837 -2.7428 1.6545 31 6 4.0226 -2.5175 0.7614 32 1 -0.4850 -0.8368 -0.0736 33 1 4.1693 0.5850 0.5215 34 1 3.3188 0.2507 2.0543 35 1 3.5926 -0.1681 3.9600 36 1 4.9380 -0.0550 5.1127 37 1 3.6379 -2.2831 4.9622 38 1 5.4113 -2.3416 4.9828 39 1 4.5247 -3.3805 5.7240 40 1 3.3683 -4.2177 7.7200 41 1 1.5209 -5.8160 7.5196 42 1 -0.0341 -7.4735 3.0120 43 1 1.8410 -5.9369 2.0505 44 1 3.3787 -3.3561 1.0263 45 1 4.5461 -2.7273 -0.1714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083202046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:50 Heat of formation + Delta-G solvation = 40.775790 kcal Electronic energy + Delta-G solvation = -31158.305824 eV Core-core repulsion = 27143.161650 eV Total energy + Delta-G solvation = -4015.144174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.66637 -41.89892 -39.86794 -38.23014 -37.53100 -36.19906 -34.65241 -33.05608 -32.16299 -30.65668 -30.11277 -29.68383 -29.19000 -26.27863 -25.12958 -24.69618 -23.05694 -22.54567 -22.00967 -21.52678 -20.45035 -19.52498 -19.11084 -18.47918 -18.04481 -17.66811 -17.02220 -16.69706 -16.51740 -16.32543 -16.01403 -15.66154 -15.47310 -15.41790 -15.27904 -14.89849 -14.85265 -14.60797 -14.06630 -13.94392 -13.66388 -13.57428 -13.39947 -13.09020 -12.95032 -12.78670 -12.52067 -12.46214 -12.18832 -12.06749 -11.82562 -11.65703 -11.39774 -11.02096 -10.76460 -10.55659 -10.41900 -9.67296 -9.20334 -9.18583 -8.79199 -8.72507 -5.43346 -0.28231 0.57228 1.34568 1.46194 1.52476 1.65303 1.70624 1.93335 2.19808 2.45820 2.61646 2.88987 2.92182 3.20591 3.39643 3.45151 3.56769 3.72887 3.88113 3.92655 3.99904 4.06161 4.15171 4.23681 4.28652 4.33377 4.37052 4.39159 4.58052 4.59635 4.63307 4.78371 4.82494 4.87034 4.87736 4.93501 4.98277 5.05581 5.38364 5.42061 5.48609 5.57040 5.63902 5.66176 6.00761 6.07959 6.15028 6.29664 6.68577 6.77130 7.07283 7.41725 8.05620 8.73586 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012370 B = 0.004551 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.005814 B = 6150.368011 C = 7173.941363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.070 4.070 3 Si 1.108 2.892 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.300 1.300 7 C -0.333 4.333 8 H 0.036 0.964 9 N -0.620 5.620 10 C 0.072 3.928 11 C 0.104 3.896 12 H 0.150 0.850 13 O -0.362 6.362 14 C 0.045 3.955 15 C 0.056 3.944 16 N -0.588 5.588 17 C 0.548 3.452 18 O -0.565 6.565 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.094 4.094 23 C 0.070 3.930 24 N -0.579 5.579 25 H 0.436 0.564 26 C 0.080 3.920 27 C -0.250 4.250 28 C -0.095 4.095 29 C 0.122 3.878 30 H 0.101 0.899 31 C 0.120 3.880 32 H 0.247 0.753 33 H 0.043 0.957 34 H 0.032 0.968 35 H 0.029 0.971 36 H 0.160 0.840 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.174 0.826 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.209 0.791 43 H 0.113 0.887 44 H 0.045 0.955 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.063 -9.660 20.933 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.265 4.265 3 Si 0.934 3.066 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.228 1.228 7 C -0.461 4.461 8 H 0.054 0.946 9 N -0.349 5.349 10 C -0.053 4.053 11 C 0.045 3.955 12 H 0.168 0.832 13 O -0.278 6.278 14 C -0.032 4.032 15 C -0.065 4.065 16 N -0.321 5.321 17 C 0.339 3.661 18 O -0.446 6.446 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.115 4.115 23 C -0.037 4.037 24 N -0.184 5.184 25 H 0.277 0.723 26 C -0.048 4.048 27 C -0.276 4.276 28 C -0.101 4.101 29 C 0.017 3.983 30 H 0.118 0.882 31 C -0.005 4.005 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.177 0.823 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.191 0.809 40 H 0.195 0.805 41 H 0.179 0.821 42 H 0.226 0.774 43 H 0.132 0.868 44 H 0.063 0.937 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.930 -8.317 20.531 23.884 hybrid contribution -1.154 -2.420 -1.341 2.998 sum 7.775 -10.738 19.190 23.324 Atomic orbital electron populations 1.71034 1.07068 1.29109 1.51047 1.27018 0.96003 1.04310 0.99125 0.83330 0.73409 0.71983 0.77882 1.19478 1.19778 1.22814 1.19758 0.94565 0.97594 1.34141 0.94570 1.44534 1.20284 1.04714 1.65324 1.22462 0.94187 0.92188 0.96417 1.22461 0.97775 0.89357 0.85912 0.83230 1.86921 1.54522 1.69598 1.16792 1.22757 0.94453 0.93931 0.92045 1.22909 1.04988 0.93464 0.85169 1.46680 1.60727 1.15130 1.09530 1.18823 0.77856 0.81419 0.88018 1.90686 1.59408 1.57922 1.36552 1.19359 0.98797 1.01156 0.93828 1.22328 1.01637 0.99882 0.90100 1.21268 0.95222 0.96633 0.99630 1.20708 0.98433 0.98428 0.93913 1.18466 0.93608 0.96797 0.94793 1.41657 1.30827 1.39408 1.06506 0.72282 1.22303 0.99121 1.00110 0.83274 1.21797 1.02408 1.05499 0.97866 1.19307 0.97516 0.98922 0.94344 1.21468 0.97158 0.96025 0.83652 0.88159 1.21870 0.93256 0.89936 0.95486 0.94413 0.93923 0.95056 0.95226 0.82266 0.87254 0.86685 0.80911 0.80519 0.82062 0.77423 0.86844 0.93713 0.95401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.82 13.70 21.65 0.30 -62.53 16 2 C -0.07 -4.38 5.44 84.86 0.46 -3.92 16 3 Si 1.11 55.92 24.64 68.60 1.69 57.61 16 4 H -0.27 -12.46 6.34 99.48 0.63 -11.83 16 5 H -0.27 -12.66 6.43 99.48 0.64 -12.02 16 6 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 7 C -0.33 -21.09 10.39 84.03 0.87 -20.22 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 9 N -0.62 -33.38 3.37 -696.29 -2.35 -35.73 16 10 C 0.07 3.26 4.49 86.64 0.39 3.65 16 11 C 0.10 3.56 3.82 30.81 0.12 3.68 16 12 H 0.15 4.23 8.14 -2.38 -0.02 4.21 16 13 O -0.36 -10.56 10.24 -146.19 -1.50 -12.06 16 14 C 0.04 1.09 6.72 71.64 0.48 1.57 16 15 C 0.06 1.32 4.66 86.32 0.40 1.73 16 16 N -0.59 -20.09 3.09 -810.36 -2.50 -22.60 16 17 C 0.55 21.26 6.65 86.65 0.58 21.83 16 18 O -0.57 -26.19 13.36 -4.06 -0.05 -26.24 16 19 C -0.13 -4.17 5.47 -19.95 -0.11 -4.28 16 20 C -0.12 -2.58 7.42 22.54 0.17 -2.42 16 21 C -0.11 -1.68 9.99 22.24 0.22 -1.45 16 22 C -0.09 -1.60 10.05 22.40 0.23 -1.37 16 23 C 0.07 1.72 7.27 38.98 0.28 2.00 16 24 N -0.58 -11.18 6.06 -187.64 -1.14 -12.32 16 25 H 0.44 4.48 8.96 -92.71 -0.83 3.65 16 26 C 0.08 1.90 11.82 83.11 0.98 2.89 16 27 C -0.25 -8.81 10.42 23.43 0.24 -8.57 16 28 C -0.10 -3.22 6.11 -20.01 -0.12 -3.34 16 29 C 0.12 4.50 3.33 45.65 0.15 4.65 16 30 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 31 C 0.12 5.76 6.29 86.70 0.55 6.31 16 32 H 0.25 16.75 8.73 -92.71 -0.81 15.94 16 33 H 0.04 1.94 4.46 -2.39 -0.01 1.93 16 34 H 0.03 1.52 5.12 -2.38 -0.01 1.51 16 35 H 0.03 0.92 6.84 -2.39 -0.02 0.90 16 36 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.11 2.49 4.92 -2.39 -0.01 2.48 16 38 H 0.12 1.78 6.83 -2.39 -0.02 1.77 16 39 H 0.17 2.64 4.16 -2.91 -0.01 2.63 16 40 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.21 3.17 8.06 -2.91 -0.02 3.14 16 43 H 0.11 4.72 7.66 -2.91 -0.02 4.70 16 44 H 0.04 2.46 5.19 -2.38 -0.01 2.44 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -92.59 342.34 0.39 -92.20 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.05 Total: 18.92 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.89 Total: 2.74 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -5.69 Total: -133.17 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.55 Total: -38.30 kcal Atomic # 14 Polarization: 55.92 SS G_CDS: 1.69 Total: 57.61 kcal Total: -92.59 0.39 -92.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083202046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.976 kcal (2) G-P(sol) polarization free energy of solvation -92.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds