Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47277 * 353.67397 * 3 2 1 5 5 H 1.48501 * 109.46994 * 113.67231 * 3 2 1 6 6 H 1.48496 * 109.47129 * 233.66966 * 3 2 1 7 7 C 1.38812 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00092 * 30.72182 * 7 2 1 9 9 N 1.36939 * 119.99947 * 210.72078 * 7 2 1 10 10 C 1.46772 * 125.35943 * 356.52569 * 9 7 2 11 11 C 1.53931 * 107.61568 * 178.66419 * 10 9 7 12 12 H 1.08997 * 108.57774 * 101.53691 * 11 10 9 13 13 O 1.40855 * 110.45851 * 221.67465 * 11 10 9 14 14 C 1.41320 * 118.30980 * 68.18660 * 13 11 10 15 15 C 1.51963 * 111.60573 * 56.89550 * 14 13 11 16 16 N 1.44954 * 111.94151 * 319.69901 * 15 14 13 17 17 C 1.34771 * 117.34206 * 203.77721 * 16 15 14 18 18 O 1.21596 * 120.00586 * 187.86456 * 17 16 15 19 19 C 1.47510 * 119.99643 * 7.85936 * 17 16 15 20 20 C 1.39346 * 120.21052 * 328.82081 * 19 17 16 21 21 C 1.38322 * 120.49877 * 179.76723 * 20 19 17 22 22 C 1.37905 * 120.58760 * 0.51309 * 21 20 19 23 23 C 1.39541 * 119.99572 * 359.74737 * 22 21 20 24 24 C 1.46565 * 133.95988 * 179.97438 * 23 22 21 25 25 C 1.34204 * 106.89647 * 179.97438 * 24 23 22 26 26 N 1.36904 * 109.88268 * 0.02562 * 25 24 23 27 27 H 0.96994 * 125.01814 * 179.97438 * 26 25 24 28 28 C 1.37120 * 109.96986 * 359.97438 * 26 25 24 29 29 C 1.44546 * 125.32392 * 23.74966 * 16 15 14 30 30 H 1.09008 * 109.64472 * 105.97066 * 29 16 15 31 31 C 1.46868 * 125.36062 * 176.82570 * 9 7 2 32 32 H 0.96999 * 119.99681 * 174.96789 * 1 2 3 33 33 H 1.09000 * 109.82016 * 298.33061 * 10 9 7 34 34 H 1.08996 * 109.82678 * 59.29103 * 10 9 7 35 35 H 1.08999 * 109.05479 * 296.34832 * 14 13 11 36 36 H 1.08996 * 108.99619 * 177.40851 * 14 13 11 37 37 H 1.09002 * 108.98675 * 199.06330 * 15 14 13 38 38 H 1.08997 * 108.91893 * 80.28717 * 15 14 13 39 39 H 1.08003 * 119.74528 * 359.97438 * 20 19 17 40 40 H 1.07999 * 119.69940 * 180.26160 * 21 20 19 41 41 H 1.08004 * 120.00472 * 179.72337 * 22 21 20 42 42 H 1.08003 * 126.55334 * 0.02562 * 24 23 22 43 43 H 1.08004 * 125.06078 * 179.97438 * 25 24 23 44 44 H 1.08998 * 110.06929 * 317.03470 * 31 9 7 45 45 H 1.09005 * 110.06913 * 78.55461 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2927 2.7422 -0.1543 5 1 2.9846 1.7653 1.2823 6 1 3.2161 1.6317 -1.1279 7 6 2.0103 -1.2022 0.0005 8 1 1.5840 -2.0720 -0.4769 9 7 3.2356 -1.2852 0.6064 10 6 3.9551 -0.1651 1.2245 11 6 5.2672 -0.7196 1.8080 12 1 6.0818 -0.4717 1.1276 13 8 5.5211 -0.1543 3.0729 14 6 4.6661 -0.4979 4.1444 15 6 4.6206 -2.0009 4.3641 16 7 4.5910 -2.7307 3.1120 17 6 4.0695 -3.9733 3.1320 18 8 4.1493 -4.6821 2.1472 19 6 3.4021 -4.4735 4.3486 20 6 3.8197 -4.0410 5.6057 21 6 3.1950 -4.5025 6.7502 22 6 2.1561 -5.4057 6.6670 23 6 1.7231 -5.8579 5.4200 24 6 0.6790 -6.7884 4.9816 25 6 0.7293 -6.8276 3.6411 26 7 1.7203 -5.9989 3.1879 27 1 1.9471 -5.8608 2.2550 28 6 2.3449 -5.3928 4.2474 29 6 5.0746 -2.2341 1.8436 30 1 6.0166 -2.7226 1.5939 31 6 4.0393 -2.5077 0.7345 32 1 -0.4849 -0.8368 -0.0737 33 1 4.1735 0.5936 0.4730 34 1 3.3514 0.2666 2.0228 35 1 3.6601 -0.1397 3.9259 36 1 5.0254 -0.0161 5.0536 37 1 3.7288 -2.2483 4.9400 38 1 5.5024 -2.3023 4.9295 39 1 4.6353 -3.3376 5.6867 40 1 3.5264 -4.1555 7.7177 41 1 1.6779 -5.7632 7.5670 42 1 -0.0015 -7.3370 5.6160 43 1 0.0845 -7.4248 3.0132 44 1 3.4025 -3.3463 1.0160 45 1 4.5467 -2.7220 -0.2061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083202074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = 69.171439 kcal Electronic energy + Delta-G solvation = -31224.501325 eV Core-core repulsion = 27210.588479 eV Total energy + Delta-G solvation = -4013.912846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.65575 -40.71801 -38.56467 -37.14392 -36.12984 -35.00467 -32.78650 -31.90722 -30.52690 -29.64775 -28.99982 -28.20695 -27.87327 -24.66420 -23.89357 -23.46636 -21.78471 -21.45818 -20.64247 -20.19762 -19.19396 -17.83065 -17.57622 -17.19632 -17.10408 -16.33598 -15.86660 -15.54008 -15.30092 -15.11081 -14.71901 -14.41946 -14.22710 -14.14156 -13.88066 -13.50463 -13.18116 -13.12733 -13.02952 -12.69575 -12.44791 -12.11848 -11.95511 -11.85468 -11.61631 -11.39311 -11.23926 -11.18617 -10.86923 -10.60787 -10.26021 -9.93208 -9.82240 -9.66105 -9.26555 -9.02575 -8.45695 -8.36868 -8.24416 -7.79947 -7.09371 -6.40055 -3.16164 0.70448 1.55294 2.48654 2.82827 3.06583 3.19404 3.39625 3.49699 3.67628 3.77180 3.89160 4.36084 4.58670 4.61427 4.63731 4.76204 4.84614 4.93111 4.97452 5.07431 5.11949 5.18054 5.21731 5.28536 5.43005 5.45119 5.47600 5.58494 5.65363 5.70030 5.77230 5.81594 5.85707 5.92673 6.18626 6.23840 6.39612 6.43112 6.58421 6.60140 6.60847 6.66500 6.90797 7.05445 7.29617 7.47631 7.54247 7.69636 8.21352 8.31059 9.01583 9.58126 10.22274 11.10972 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.004590 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.684484 B = 6099.384292 C = 7119.830517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.017 4.017 3 Si 1.050 2.950 4 H -0.298 1.298 5 H -0.279 1.279 6 H -0.296 1.296 7 C -0.335 4.335 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.090 3.910 11 C 0.087 3.913 12 H 0.120 0.880 13 O -0.368 6.368 14 C 0.051 3.949 15 C 0.062 3.938 16 N -0.579 5.579 17 C 0.560 3.440 18 O -0.537 6.537 19 C -0.143 4.143 20 C -0.088 4.088 21 C -0.161 4.161 22 C -0.046 4.046 23 C -0.121 4.121 24 C -0.207 4.207 25 C 0.055 3.945 26 N -0.579 5.579 27 H 0.425 0.575 28 C 0.151 3.849 29 C 0.112 3.888 30 H 0.081 0.919 31 C 0.124 3.876 32 H 0.262 0.738 33 H 0.034 0.966 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.151 0.849 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.172 0.828 44 H 0.073 0.927 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.168 -9.651 14.936 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.218 4.218 3 Si 0.883 3.117 4 H -0.226 1.226 5 H -0.206 1.206 6 H -0.225 1.225 7 C -0.462 4.462 8 H 0.095 0.905 9 N -0.334 5.334 10 C -0.036 4.036 11 C 0.028 3.972 12 H 0.137 0.863 13 O -0.285 6.285 14 C -0.026 4.026 15 C -0.061 4.061 16 N -0.311 5.311 17 C 0.350 3.650 18 O -0.415 6.415 19 C -0.149 4.149 20 C -0.107 4.107 21 C -0.180 4.180 22 C -0.065 4.065 23 C -0.125 4.125 24 C -0.232 4.232 25 C -0.072 4.072 26 N -0.181 5.181 27 H 0.264 0.736 28 C 0.040 3.960 29 C 0.008 3.992 30 H 0.099 0.901 31 C -0.002 4.002 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.168 0.832 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.166 0.834 43 H 0.189 0.811 44 H 0.091 0.909 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.100 -8.208 14.279 18.354 hybrid contribution 0.015 -1.719 -0.778 1.887 sum 8.115 -9.927 13.502 18.619 Atomic orbital electron populations 1.70954 1.05901 1.29995 1.48284 1.25662 0.96043 1.00860 0.99244 0.84158 0.74362 0.76346 0.76847 1.22582 1.20562 1.22471 1.19926 0.91635 0.98654 1.35942 0.90478 1.44606 1.19439 1.02220 1.67093 1.22463 0.91985 0.92297 0.96843 1.22575 0.99536 0.90284 0.84843 0.86277 1.86896 1.55071 1.69470 1.17016 1.22417 0.96367 0.93135 0.90673 1.22566 1.02789 0.94223 0.86547 1.46486 1.61192 1.14883 1.08522 1.18280 0.77954 0.81335 0.87433 1.90704 1.58679 1.56383 1.35778 1.18843 0.99669 1.02421 0.93976 1.21920 0.99900 0.98189 0.90694 1.20793 0.98597 1.00494 0.98148 1.20679 0.95198 0.94977 0.95622 1.19203 0.99430 1.01606 0.92298 1.21652 1.02754 1.05016 0.93795 1.21946 0.93285 0.96462 0.95517 1.41933 1.29490 1.37633 1.09037 0.73579 1.17908 0.94835 0.95610 0.87677 1.21665 0.98335 0.95374 0.83871 0.90147 1.21828 0.92660 0.91934 0.93796 0.92766 0.94848 0.93048 0.92085 0.87257 0.87737 0.90858 0.83231 0.85360 0.85706 0.83406 0.81087 0.90908 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.77 13.70 55.49 0.76 -28.00 16 2 C -0.02 -0.50 5.45 -17.43 -0.09 -0.60 16 3 Si 1.05 26.67 24.85 -169.99 -4.22 22.45 16 4 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 5 H -0.28 -6.50 5.09 56.52 0.29 -6.21 16 6 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.33 -9.79 10.41 -15.06 -0.16 -9.95 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 9 N -0.60 -15.24 3.37 -171.44 -0.58 -15.82 16 10 C 0.09 2.00 4.22 -3.41 -0.01 1.98 16 11 C 0.09 1.53 3.82 -26.39 -0.10 1.43 16 12 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 13 O -0.37 -5.89 10.24 -34.45 -0.35 -6.25 16 14 C 0.05 0.69 6.72 36.63 0.25 0.94 16 15 C 0.06 0.79 4.65 -5.40 -0.03 0.76 16 16 N -0.58 -9.59 3.09 -170.06 -0.53 -10.11 16 17 C 0.56 9.84 6.66 -12.48 -0.08 9.75 16 18 O -0.54 -10.61 13.36 5.28 0.07 -10.54 16 19 C -0.14 -2.20 5.46 -104.87 -0.57 -2.78 16 20 C -0.09 -1.04 7.41 -39.14 -0.29 -1.33 16 21 C -0.16 -1.65 10.00 -39.67 -0.40 -2.05 16 22 C -0.05 -0.51 10.09 -39.22 -0.40 -0.91 16 23 C -0.12 -1.63 6.37 -105.15 -0.67 -2.30 16 24 C -0.21 -2.42 11.09 -37.65 -0.42 -2.84 16 25 C 0.05 0.64 11.82 -16.71 -0.20 0.44 16 26 N -0.58 -8.49 5.92 -10.45 -0.06 -8.55 16 27 H 0.43 6.42 8.13 -40.82 -0.33 6.09 16 28 C 0.15 2.35 6.86 -83.76 -0.57 1.78 16 29 C 0.11 2.01 3.33 -68.51 -0.23 1.78 16 30 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 31 C 0.12 2.71 6.29 -3.24 -0.02 2.69 16 32 H 0.26 8.23 8.73 -40.82 -0.36 7.87 16 33 H 0.03 0.78 4.83 -51.93 -0.25 0.53 16 34 H 0.05 1.23 4.88 -51.93 -0.25 0.98 16 35 H 0.06 0.97 6.84 -51.93 -0.35 0.61 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.11 1.28 4.93 -51.93 -0.26 1.02 16 38 H 0.07 0.73 6.82 -51.93 -0.35 0.37 16 39 H 0.15 1.42 4.13 -52.48 -0.22 1.20 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 42 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.17 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.07 1.72 5.18 -51.93 -0.27 1.46 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -35.96 341.82 -9.11 -45.07 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.36 Total: 7.80 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.99 Total: -1.20 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.40 Total: -62.48 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.28 Total: -16.79 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.22 Total: 22.45 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.96 -9.11 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083202074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.238 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds