Wall clock time and date at job start Sat Apr 11 2020 06:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99939 * 2 1 4 4 H 1.48497 * 109.47277 * 353.67397 * 3 2 1 5 5 H 1.48501 * 109.46994 * 113.67231 * 3 2 1 6 6 H 1.48496 * 109.47129 * 233.66966 * 3 2 1 7 7 C 1.38812 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00092 * 30.72182 * 7 2 1 9 9 N 1.36939 * 119.99947 * 210.72078 * 7 2 1 10 10 C 1.46772 * 125.35943 * 356.52569 * 9 7 2 11 11 C 1.53931 * 107.61568 * 178.66419 * 10 9 7 12 12 H 1.08997 * 108.57774 * 101.53691 * 11 10 9 13 13 O 1.40855 * 110.45851 * 221.67465 * 11 10 9 14 14 C 1.41320 * 118.30980 * 68.18660 * 13 11 10 15 15 C 1.51963 * 111.60573 * 56.89550 * 14 13 11 16 16 N 1.44954 * 111.94151 * 319.69901 * 15 14 13 17 17 C 1.34771 * 117.34206 * 203.77721 * 16 15 14 18 18 O 1.21596 * 120.00586 * 187.86456 * 17 16 15 19 19 C 1.47510 * 119.99643 * 7.85936 * 17 16 15 20 20 C 1.39346 * 120.21052 * 328.82081 * 19 17 16 21 21 C 1.38322 * 120.49877 * 179.76723 * 20 19 17 22 22 C 1.37905 * 120.58760 * 0.51309 * 21 20 19 23 23 C 1.39541 * 119.99572 * 359.74737 * 22 21 20 24 24 C 1.46565 * 133.95988 * 179.97438 * 23 22 21 25 25 C 1.34204 * 106.89647 * 179.97438 * 24 23 22 26 26 N 1.36904 * 109.88268 * 0.02562 * 25 24 23 27 27 H 0.96994 * 125.01814 * 179.97438 * 26 25 24 28 28 C 1.37120 * 109.96986 * 359.97438 * 26 25 24 29 29 C 1.44546 * 125.32392 * 23.74966 * 16 15 14 30 30 H 1.09008 * 109.64472 * 105.97066 * 29 16 15 31 31 C 1.46868 * 125.36062 * 176.82570 * 9 7 2 32 32 H 0.96999 * 119.99681 * 174.96789 * 1 2 3 33 33 H 1.09000 * 109.82016 * 298.33061 * 10 9 7 34 34 H 1.08996 * 109.82678 * 59.29103 * 10 9 7 35 35 H 1.08999 * 109.05479 * 296.34832 * 14 13 11 36 36 H 1.08996 * 108.99619 * 177.40851 * 14 13 11 37 37 H 1.09002 * 108.98675 * 199.06330 * 15 14 13 38 38 H 1.08997 * 108.91893 * 80.28717 * 15 14 13 39 39 H 1.08003 * 119.74528 * 359.97438 * 20 19 17 40 40 H 1.07999 * 119.69940 * 180.26160 * 21 20 19 41 41 H 1.08004 * 120.00472 * 179.72337 * 22 21 20 42 42 H 1.08003 * 126.55334 * 0.02562 * 24 23 22 43 43 H 1.08004 * 125.06078 * 179.97438 * 25 24 23 44 44 H 1.08998 * 110.06929 * 317.03470 * 31 9 7 45 45 H 1.09005 * 110.06913 * 78.55461 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2927 2.7422 -0.1543 5 1 2.9846 1.7653 1.2823 6 1 3.2161 1.6317 -1.1279 7 6 2.0103 -1.2022 0.0005 8 1 1.5840 -2.0720 -0.4769 9 7 3.2356 -1.2852 0.6064 10 6 3.9551 -0.1651 1.2245 11 6 5.2672 -0.7196 1.8080 12 1 6.0818 -0.4717 1.1276 13 8 5.5211 -0.1543 3.0729 14 6 4.6661 -0.4979 4.1444 15 6 4.6206 -2.0009 4.3641 16 7 4.5910 -2.7307 3.1120 17 6 4.0695 -3.9733 3.1320 18 8 4.1493 -4.6821 2.1472 19 6 3.4021 -4.4735 4.3486 20 6 3.8197 -4.0410 5.6057 21 6 3.1950 -4.5025 6.7502 22 6 2.1561 -5.4057 6.6670 23 6 1.7231 -5.8579 5.4200 24 6 0.6790 -6.7884 4.9816 25 6 0.7293 -6.8276 3.6411 26 7 1.7203 -5.9989 3.1879 27 1 1.9471 -5.8608 2.2550 28 6 2.3449 -5.3928 4.2474 29 6 5.0746 -2.2341 1.8436 30 1 6.0166 -2.7226 1.5939 31 6 4.0393 -2.5077 0.7345 32 1 -0.4849 -0.8368 -0.0737 33 1 4.1735 0.5936 0.4730 34 1 3.3514 0.2666 2.0228 35 1 3.6601 -0.1397 3.9259 36 1 5.0254 -0.0161 5.0536 37 1 3.7288 -2.2483 4.9400 38 1 5.5024 -2.3023 4.9295 39 1 4.6353 -3.3376 5.6867 40 1 3.5264 -4.1555 7.7177 41 1 1.6779 -5.7632 7.5670 42 1 -0.0015 -7.3370 5.6160 43 1 0.0845 -7.4248 3.0132 44 1 3.4025 -3.3463 1.0160 45 1 4.5467 -2.7220 -0.2061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083202074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:54 Heat of formation + Delta-G solvation = 42.311074 kcal Electronic energy + Delta-G solvation = -31225.666077 eV Core-core repulsion = 27210.588479 eV Total energy + Delta-G solvation = -4015.077599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.76693 -41.88203 -39.86621 -38.29733 -37.60775 -36.23970 -34.70443 -33.12440 -32.07012 -30.64577 -30.10929 -29.64620 -29.30257 -26.33572 -25.16491 -24.74242 -23.02567 -22.60984 -22.06423 -21.45379 -20.50943 -19.57919 -18.92342 -18.46571 -18.36145 -17.66057 -17.14492 -16.74159 -16.52364 -16.32996 -16.05844 -15.68068 -15.45633 -15.36682 -15.33074 -14.93467 -14.88498 -14.57098 -14.11045 -13.97176 -13.78254 -13.58827 -13.27361 -13.07455 -12.94003 -12.72417 -12.66018 -12.51916 -12.16926 -12.02805 -11.93262 -11.70797 -11.36781 -11.02923 -10.79380 -10.52330 -10.44133 -9.73907 -9.23795 -9.20813 -8.80710 -8.74264 -5.48087 -0.25969 0.62718 1.35323 1.41521 1.45346 1.65401 1.66330 1.96616 2.21761 2.45783 2.59509 2.88352 2.91010 3.15636 3.35363 3.41665 3.52833 3.66999 3.82338 3.90213 3.96207 4.05014 4.12090 4.14609 4.29083 4.31306 4.33576 4.43917 4.54718 4.59698 4.62628 4.77525 4.80250 4.84517 4.85053 4.93547 4.95538 5.00085 5.33642 5.42734 5.50297 5.51900 5.73555 5.77596 5.97585 6.07101 6.13870 6.24534 6.48635 6.73223 6.95275 7.37809 8.01016 8.71826 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.004590 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.684484 B = 6099.384292 C = 7119.830517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.069 4.069 3 Si 1.093 2.907 4 H -0.305 1.305 5 H -0.243 1.243 6 H -0.282 1.282 7 C -0.332 4.332 8 H 0.037 0.963 9 N -0.621 5.621 10 C 0.082 3.918 11 C 0.102 3.898 12 H 0.150 0.850 13 O -0.362 6.362 14 C 0.045 3.955 15 C 0.055 3.945 16 N -0.585 5.585 17 C 0.551 3.449 18 O -0.575 6.575 19 C -0.180 4.180 20 C -0.077 4.077 21 C -0.156 4.156 22 C -0.042 4.042 23 C -0.143 4.143 24 C -0.207 4.207 25 C 0.038 3.962 26 N -0.598 5.598 27 H 0.414 0.586 28 C 0.112 3.888 29 C 0.121 3.879 30 H 0.102 0.898 31 C 0.121 3.879 32 H 0.246 0.754 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.160 0.840 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.177 0.823 40 H 0.172 0.828 41 H 0.158 0.842 42 H 0.178 0.822 43 H 0.200 0.800 44 H 0.046 0.954 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.782 -8.636 18.801 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.264 4.264 3 Si 0.919 3.081 4 H -0.233 1.233 5 H -0.168 1.168 6 H -0.209 1.209 7 C -0.459 4.459 8 H 0.055 0.945 9 N -0.349 5.349 10 C -0.043 4.043 11 C 0.042 3.958 12 H 0.167 0.833 13 O -0.278 6.278 14 C -0.032 4.032 15 C -0.067 4.067 16 N -0.316 5.316 17 C 0.343 3.657 18 O -0.457 6.457 19 C -0.186 4.186 20 C -0.095 4.095 21 C -0.174 4.174 22 C -0.061 4.061 23 C -0.148 4.148 24 C -0.231 4.231 25 C -0.087 4.087 26 N -0.199 5.199 27 H 0.251 0.749 28 C 0.001 3.999 29 C 0.016 3.984 30 H 0.119 0.881 31 C -0.005 4.005 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.177 0.823 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.194 0.806 40 H 0.189 0.811 41 H 0.176 0.824 42 H 0.195 0.805 43 H 0.216 0.784 44 H 0.064 0.936 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.745 -7.216 18.205 22.337 hybrid contribution -0.882 -2.174 -1.916 3.029 sum 9.863 -9.389 16.289 21.231 Atomic orbital electron populations 1.71079 1.07091 1.29038 1.51251 1.27038 0.96004 1.04386 0.98987 0.83651 0.73619 0.71868 0.78944 1.23319 1.16770 1.20892 1.19764 0.93616 0.97302 1.35261 0.94490 1.44569 1.18938 1.04652 1.66762 1.22618 0.93903 0.91560 0.96201 1.22502 0.97688 0.89317 0.86267 0.83300 1.86930 1.55076 1.69297 1.16516 1.22755 0.94934 0.93889 0.91606 1.22928 1.04974 0.93464 0.85290 1.46636 1.60956 1.14851 1.09182 1.18787 0.77601 0.81455 0.87890 1.90665 1.60023 1.57604 1.37366 1.18962 1.00903 1.04323 0.94421 1.22295 0.99976 0.97563 0.89692 1.21302 0.97520 0.99326 0.99297 1.21189 0.94953 0.94205 0.95708 1.19675 1.00033 1.02330 0.92725 1.22083 1.02563 1.04520 0.93952 1.22559 0.93183 0.96501 0.96472 1.42144 1.30544 1.38628 1.08586 0.74913 1.18427 0.95986 0.96746 0.88742 1.21497 0.97387 0.96109 0.83379 0.88067 1.21878 0.93043 0.89963 0.95605 0.94488 0.94659 0.94613 0.95071 0.82302 0.87226 0.86585 0.80626 0.81106 0.82449 0.80468 0.78350 0.93570 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.15 13.70 21.65 0.30 -61.85 16 2 C -0.07 -4.27 5.45 84.86 0.46 -3.81 16 3 Si 1.09 54.12 24.85 68.60 1.70 55.82 16 4 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 5 H -0.24 -10.62 5.09 99.48 0.51 -10.11 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 7 C -0.33 -20.39 10.41 84.03 0.87 -19.52 16 8 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 9 N -0.62 -32.04 3.37 -696.30 -2.35 -34.39 16 10 C 0.08 3.55 4.22 86.64 0.37 3.92 16 11 C 0.10 3.31 3.82 30.82 0.12 3.42 16 12 H 0.15 4.00 8.14 -2.39 -0.02 3.98 16 13 O -0.36 -10.09 10.24 -146.20 -1.50 -11.58 16 14 C 0.04 1.03 6.72 71.64 0.48 1.51 16 15 C 0.05 1.21 4.65 86.33 0.40 1.61 16 16 N -0.58 -18.64 3.09 -810.22 -2.50 -21.14 16 17 C 0.55 19.71 6.66 86.69 0.58 20.29 16 18 O -0.57 -24.13 13.36 -4.02 -0.05 -24.19 16 19 C -0.18 -5.53 5.46 -20.02 -0.11 -5.64 16 20 C -0.08 -1.59 7.41 22.56 0.17 -1.43 16 21 C -0.16 -2.55 10.00 22.21 0.22 -2.33 16 22 C -0.04 -0.80 10.09 22.51 0.23 -0.58 16 23 C -0.14 -3.74 6.37 -20.21 -0.13 -3.87 16 24 C -0.21 -4.69 11.09 23.52 0.26 -4.43 16 25 C 0.04 0.92 11.82 82.98 0.98 1.90 16 26 N -0.60 -18.94 5.92 -186.97 -1.11 -20.04 16 27 H 0.41 14.17 8.13 -92.71 -0.75 13.42 16 28 C 0.11 3.59 6.86 39.44 0.27 3.86 16 29 C 0.12 4.20 3.33 45.66 0.15 4.35 16 30 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 31 C 0.12 5.46 6.29 86.70 0.55 6.00 16 32 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 33 H 0.04 1.55 4.83 -2.39 -0.01 1.54 16 34 H 0.04 1.67 4.88 -2.39 -0.01 1.66 16 35 H 0.03 0.92 6.84 -2.39 -0.02 0.90 16 36 H 0.16 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.11 2.35 4.93 -2.39 -0.01 2.34 16 38 H 0.12 1.64 6.82 -2.39 -0.02 1.63 16 39 H 0.18 2.52 4.13 -2.91 -0.01 2.51 16 40 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.18 2.75 8.06 -2.91 -0.02 2.73 16 43 H 0.20 3.29 8.06 -2.91 -0.02 3.26 16 44 H 0.05 2.35 5.18 -2.39 -0.01 2.34 16 45 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -85.63 341.82 0.43 -85.20 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.07 Total: 26.87 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 5.87 Total: 5.30 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -5.66 Total: -137.42 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.55 Total: -35.77 kcal Atomic # 14 Polarization: 54.12 SS G_CDS: 1.70 Total: 55.82 kcal Total: -85.63 0.43 -85.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083202074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.512 kcal (2) G-P(sol) polarization free energy of solvation -85.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds