Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99983 * 2 1 4 4 H 1.48500 * 109.47415 * 274.98271 * 3 2 1 5 5 H 1.48496 * 109.47176 * 34.98558 * 3 2 1 6 6 H 1.48501 * 109.46993 * 154.98524 * 3 2 1 7 7 C 1.38817 * 119.99478 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99139 * 172.83450 * 7 2 1 9 9 N 1.36936 * 120.00258 * 352.83027 * 7 2 1 10 10 C 1.46774 * 125.36344 * 6.42577 * 9 7 2 11 11 C 1.53911 * 107.62784 * 178.78426 * 10 9 7 12 12 H 1.08994 * 109.52080 * 100.76941 * 11 10 9 13 13 O 1.40852 * 110.30349 * 221.40714 * 11 10 9 14 14 C 1.41329 * 118.30670 * 68.00470 * 13 11 10 15 15 C 1.51962 * 111.60702 * 56.89862 * 14 13 11 16 16 N 1.44962 * 111.93477 * 319.69300 * 15 14 13 17 17 C 1.34780 * 117.33593 * 203.73169 * 16 15 14 18 18 O 1.21588 * 120.00029 * 183.51647 * 17 16 15 19 19 C 1.47581 * 119.99852 * 3.51627 * 17 16 15 20 20 C 1.40248 * 119.83128 * 334.75810 * 19 17 16 21 21 C 1.36191 * 120.37392 * 179.97438 * 20 19 17 22 22 C 1.39913 * 119.96258 * 0.02562 * 21 20 19 23 23 C 1.46259 * 133.83426 * 179.97438 * 22 21 20 24 24 C 1.34453 * 107.03214 * 179.97438 * 23 22 21 25 25 N 1.36562 * 109.97945 * 0.02562 * 24 23 22 26 26 H 0.96997 * 125.07014 * 180.02562 * 25 24 23 27 27 C 1.37823 * 109.85874 * 359.97438 * 25 24 23 28 28 C 1.38688 * 133.37726 * 180.33004 * 27 25 24 29 29 C 1.44543 * 125.32619 * 24.01658 * 16 15 14 30 30 H 1.08996 * 109.64630 * 106.18668 * 29 16 15 31 31 C 1.46873 * 125.36036 * 186.39158 * 9 7 2 32 32 H 0.97003 * 119.99984 * 0.02562 * 1 2 3 33 33 H 1.09007 * 109.82295 * 59.25579 * 10 9 7 34 34 H 1.09000 * 109.88990 * 298.34997 * 10 9 7 35 35 H 1.09000 * 109.05194 * 296.34878 * 14 13 11 36 36 H 1.08998 * 108.99299 * 177.40950 * 14 13 11 37 37 H 1.08995 * 108.98464 * 199.05997 * 15 14 13 38 38 H 1.08994 * 108.98779 * 80.32521 * 15 14 13 39 39 H 1.08000 * 119.81100 * 0.02713 * 20 19 17 40 40 H 1.08010 * 120.01810 * 179.97438 * 21 20 19 41 41 H 1.07999 * 126.48404 * 359.97438 * 23 22 21 42 42 H 1.08000 * 125.01327 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.16672 * 359.90263 * 28 27 25 44 44 H 1.08993 * 110.06782 * 317.06372 * 31 9 7 45 45 H 1.09005 * 110.05894 * 78.58518 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5043 2.6199 0.8027 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0838 -1.2058 -0.1172 9 7 1.3334 -2.3836 0.1469 10 6 -0.1268 -2.5276 0.1800 11 6 -0.4441 -4.0262 0.3298 12 1 -0.6938 -4.2436 1.3683 13 8 -1.5256 -4.3821 -0.4994 14 6 -1.3348 -4.3524 -1.8994 15 6 -0.1771 -5.2399 -2.3253 16 7 0.9427 -5.1458 -1.4095 17 6 2.1622 -5.4618 -1.8886 18 8 3.1256 -5.4617 -1.1467 19 6 2.3283 -5.8080 -3.3136 20 6 1.2428 -6.3222 -4.0377 21 6 1.3835 -6.6449 -5.3533 22 6 2.6167 -6.4642 -5.9891 23 6 3.0994 -6.7009 -7.3493 24 6 4.3926 -6.3342 -7.3776 25 7 4.7768 -5.8830 -6.1473 26 1 5.6647 -5.5635 -5.9231 27 6 3.7142 -5.9483 -5.2719 28 6 3.5605 -5.6166 -3.9341 29 6 0.8573 -4.7462 -0.0231 30 1 0.9828 -5.6187 0.6181 31 6 1.9546 -3.7061 0.2962 32 1 -0.4850 0.8401 -0.0004 33 1 -0.5567 -2.1496 -0.7477 34 1 -0.5347 -1.9768 1.0276 35 1 -1.1301 -3.3275 -2.2089 36 1 -2.2458 -4.6966 -2.3890 37 1 0.1522 -4.9401 -3.3201 38 1 -0.5184 -6.2743 -2.3630 39 1 0.2897 -6.4622 -3.5494 40 1 0.5438 -7.0409 -5.9053 41 1 2.5256 -7.0956 -8.1747 42 1 5.0334 -6.3892 -8.2452 43 1 4.3933 -5.2165 -3.3749 44 1 2.7840 -3.8108 -0.4032 45 1 2.3078 -3.8399 1.3187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083208737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = 69.987583 kcal Electronic energy + Delta-G solvation = -30547.401914 eV Core-core repulsion = 26533.524458 eV Total energy + Delta-G solvation = -4013.877455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53619 -40.72521 -38.48174 -36.93014 -35.68089 -34.86750 -32.45002 -32.06322 -30.23019 -29.52443 -29.24003 -27.93633 -27.15199 -24.73729 -23.92271 -23.21556 -22.21553 -20.99193 -20.80840 -19.77690 -18.81211 -18.26305 -17.48476 -16.74342 -16.61434 -16.02552 -15.72710 -15.25034 -14.88449 -14.78070 -14.54922 -14.40590 -14.02865 -13.97548 -13.85957 -13.59008 -13.36688 -13.15647 -12.68076 -12.46210 -12.16680 -12.04993 -11.88217 -11.49756 -11.17088 -11.07047 -10.91163 -10.82093 -10.61111 -10.53566 -10.28805 -10.09504 -9.89411 -9.70410 -9.40149 -8.90858 -8.54873 -8.31578 -8.20961 -7.85973 -6.77191 -5.70466 -3.02259 0.77292 1.39760 2.44089 2.82327 3.09234 3.21772 3.41073 3.46900 3.49440 3.88151 4.15228 4.48391 4.53148 4.58916 4.67607 4.86643 4.94894 5.09787 5.15672 5.23762 5.28685 5.39814 5.42758 5.45823 5.53124 5.58422 5.72189 5.75230 5.76783 5.87776 5.90237 6.02143 6.11239 6.24581 6.33084 6.38814 6.47019 6.57037 6.57525 6.86437 6.96377 7.16699 7.29880 7.41037 7.52087 7.60163 7.75649 7.92213 8.27574 8.42174 9.24290 9.84882 10.49043 11.41438 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.003771 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.932145 B = 7423.064239 C = 8637.879089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.602 5.602 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.111 0.889 13 O -0.371 6.371 14 C 0.053 3.947 15 C 0.063 3.937 16 N -0.576 5.576 17 C 0.555 3.445 18 O -0.527 6.527 19 C -0.109 4.109 20 C -0.146 4.146 21 C -0.084 4.084 22 C -0.090 4.090 23 C -0.212 4.212 24 C 0.057 3.943 25 N -0.593 5.593 26 H 0.417 0.583 27 C 0.081 3.919 28 C -0.061 4.061 29 C 0.109 3.891 30 H 0.075 0.925 31 C 0.117 3.883 32 H 0.252 0.748 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.147 0.853 42 H 0.171 0.829 43 H 0.132 0.868 44 H 0.075 0.925 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -15.756 -13.830 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.027 3.973 11 C 0.010 3.990 12 H 0.128 0.872 13 O -0.288 6.288 14 C -0.024 4.024 15 C -0.059 4.059 16 N -0.308 5.308 17 C 0.344 3.656 18 O -0.405 6.405 19 C -0.114 4.114 20 C -0.164 4.164 21 C -0.102 4.102 22 C -0.095 4.095 23 C -0.237 4.237 24 C -0.070 4.070 25 N -0.195 5.195 26 H 0.254 0.746 27 C -0.025 4.025 28 C -0.082 4.082 29 C 0.005 3.995 30 H 0.092 0.908 31 C -0.009 4.009 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.090 0.910 39 H 0.175 0.825 40 H 0.145 0.855 41 H 0.165 0.835 42 H 0.188 0.812 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.267 -15.522 -13.309 20.572 hybrid contribution 1.142 1.215 -0.165 1.676 sum 3.410 -14.307 -13.474 19.947 Atomic orbital electron populations 1.69963 1.04843 1.24986 1.57130 1.24796 0.95698 0.97574 1.02276 0.86133 0.78802 0.83682 0.77403 1.21813 1.21594 1.20622 1.19044 0.91148 0.82392 1.42596 0.90488 1.44224 1.01098 1.01519 1.86082 1.21682 0.85287 0.88228 1.02103 1.22991 0.84512 0.97469 0.93978 0.87178 1.86865 1.37242 1.88759 1.15929 1.22353 0.97403 0.99908 0.82743 1.22642 0.88581 0.99873 0.94848 1.46474 1.06963 1.66235 1.11177 1.18237 0.82820 0.77324 0.87227 1.90718 1.39145 1.51803 1.58851 1.19506 0.94141 1.04053 0.93689 1.22014 0.99722 0.99944 0.94762 1.20201 0.95611 1.00083 0.94320 1.19412 0.93543 1.02558 0.93965 1.21715 0.94805 1.11140 0.96087 1.21869 0.96681 1.00400 0.88089 1.41781 1.11922 1.57023 1.08786 0.74605 1.18074 0.88321 1.04175 0.91948 1.20043 0.97448 0.99872 0.90823 1.21847 0.98944 0.97883 0.80852 0.90756 1.22001 0.95267 0.84280 0.99387 0.93785 0.93034 0.92696 0.91916 0.87871 0.87911 0.91014 0.82514 0.85502 0.83533 0.81214 0.85053 0.90691 0.95462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 10.31 55.49 0.57 -26.70 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.58 29.56 -169.99 -5.02 17.56 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.44 10.24 -15.06 -0.15 -6.60 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 9 N -0.60 -15.90 3.39 -171.20 -0.58 -16.48 16 10 C 0.15 3.75 5.03 -3.42 -0.02 3.73 16 11 C 0.07 1.36 3.82 -26.33 -0.10 1.26 16 12 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 13 O -0.37 -6.61 10.24 -34.45 -0.35 -6.97 16 14 C 0.05 0.79 6.72 36.63 0.25 1.04 16 15 C 0.06 0.87 4.58 -5.39 -0.02 0.85 16 16 N -0.58 -10.05 3.08 -170.46 -0.53 -10.57 16 17 C 0.55 10.05 6.84 -12.45 -0.09 9.96 16 18 O -0.53 -11.00 13.78 5.29 0.07 -10.92 16 19 C -0.11 -1.66 5.53 -104.94 -0.58 -2.24 16 20 C -0.15 -1.78 7.39 -39.56 -0.29 -2.07 16 21 C -0.08 -0.93 10.03 -39.69 -0.40 -1.32 16 22 C -0.09 -1.07 6.37 -105.04 -0.67 -1.74 16 23 C -0.21 -1.99 11.08 -37.70 -0.42 -2.41 16 24 C 0.06 0.45 11.81 -16.78 -0.20 0.25 16 25 N -0.59 -5.52 6.07 -10.68 -0.06 -5.58 16 26 H 0.42 2.78 8.96 -40.82 -0.37 2.42 16 27 C 0.08 1.02 7.26 -84.00 -0.61 0.41 16 28 C -0.06 -0.88 9.60 -39.03 -0.37 -1.25 16 29 C 0.11 2.10 3.40 -68.24 -0.23 1.87 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 C 0.12 2.68 6.28 -3.03 -0.02 2.66 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.05 1.39 5.92 -51.92 -0.31 1.09 16 34 H 0.05 1.50 7.34 -51.93 -0.38 1.12 16 35 H 0.06 1.10 6.81 -51.93 -0.35 0.75 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.10 1.33 5.01 -51.93 -0.26 1.07 16 38 H 0.07 0.79 6.67 -51.93 -0.35 0.44 16 39 H 0.16 1.61 3.65 -53.42 -0.19 1.42 16 40 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 43 H 0.13 1.93 7.83 -52.49 -0.41 1.52 16 44 H 0.08 1.84 5.03 -51.93 -0.26 1.58 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -35.38 349.33 -10.05 -45.43 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.39 Total: 4.90 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -4.02 Total: 4.08 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.60 Total: -59.34 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.28 Total: -17.89 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.38 -10.05 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083208737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.419 kcal (2) G-P(sol) polarization free energy of solvation -35.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds