Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99597 * 2 1 4 4 H 1.48505 * 109.47084 * 270.00218 * 3 2 1 5 5 H 1.48498 * 109.47418 * 30.00174 * 3 2 1 6 6 H 1.48503 * 109.46728 * 150.00419 * 3 2 1 7 7 C 1.38805 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00426 * 359.97438 * 7 2 1 10 10 C 1.47015 * 125.64968 * 180.02562 * 9 7 2 11 11 C 1.54327 * 107.27178 * 178.97794 * 10 9 7 12 12 H 1.08999 * 110.71901 * 96.34149 * 11 10 9 13 13 N 1.46497 * 110.72198 * 219.44621 * 11 10 9 14 14 C 1.34777 * 119.99525 * 271.15203 * 13 11 10 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 11 17 17 C 1.50703 * 109.47148 * 180.28037 * 16 14 13 18 18 C 1.39375 * 119.48668 * 269.72814 * 17 16 14 19 19 C 1.36178 * 121.08482 * 179.70884 * 18 17 16 20 20 C 1.40374 * 119.51170 * 0.55647 * 19 18 17 21 21 C 1.40436 * 122.07918 * 179.72859 * 20 19 18 22 22 N 1.31244 * 119.88451 * 180.02562 * 21 20 19 23 23 C 1.32606 * 122.77421 * 359.97438 * 22 21 20 24 24 C 1.36174 * 121.87938 * 359.97438 * 23 22 21 25 25 C 1.40695 * 118.66753 * 0.02562 * 24 23 22 26 26 C 1.36214 * 119.49346 * 89.99788 * 17 16 14 27 27 C 1.55159 * 103.10062 * 337.89860 * 11 10 9 28 28 H 1.08994 * 111.00616 * 153.48974 * 27 11 10 29 29 O 1.42908 * 111.00108 * 277.33551 * 27 11 10 30 30 C 1.47424 * 125.64349 * 0.04801 * 9 7 2 31 31 H 0.97000 * 119.99901 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.88553 * 59.56438 * 10 9 7 33 33 H 1.09004 * 110.00988 * 298.46543 * 10 9 7 34 34 H 0.97000 * 120.00580 * 91.15949 * 13 11 10 35 35 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 36 36 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 37 37 H 1.08001 * 119.46156 * 359.97438 * 18 17 16 38 38 H 1.07994 * 120.24500 * 180.25995 * 19 18 17 39 39 H 1.07997 * 120.05661 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.06437 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.67222 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.25951 * 359.97438 * 26 17 16 43 43 H 0.96699 * 113.99576 * 179.97438 * 29 27 11 44 44 H 1.09003 * 110.36642 * 322.92719 * 30 9 7 45 45 H 1.08993 * 110.36884 * 85.13982 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 1.9320 -3.7274 -0.0005 11 6 0.7786 -4.7524 0.0257 12 1 0.5488 -5.1002 -0.9814 13 7 1.1082 -5.8813 0.8994 14 6 1.7584 -6.9515 0.4011 15 8 2.0711 -6.9799 -0.7704 16 6 2.1029 -8.1101 1.3012 17 6 2.8278 -9.1655 0.5063 18 6 2.0982 -10.1740 -0.1206 19 6 2.7193 -11.1405 -0.8518 20 6 4.1183 -11.1285 -0.9671 21 6 4.8144 -12.1015 -1.7026 22 7 6.1234 -12.0492 -1.7814 23 6 6.8410 -11.1038 -1.1900 24 6 6.2613 -10.1149 -0.4550 25 6 4.8605 -10.1038 -0.3242 26 6 4.1863 -9.1222 0.4162 27 6 -0.4050 -3.9352 0.6077 28 1 -1.3604 -4.3374 0.2708 29 8 -0.3446 -3.8916 2.0348 30 6 -0.1414 -2.5332 -0.0010 31 1 -0.4850 0.8400 0.0004 32 1 2.5579 -3.8510 0.8832 33 1 2.5305 -3.8658 -0.9010 34 1 0.8584 -5.8585 1.8364 35 1 2.7431 -7.7624 2.1121 36 1 1.1879 -8.5324 1.7163 37 1 1.0222 -10.1869 -0.0286 38 1 2.1403 -11.9133 -1.3353 39 1 4.2735 -12.8914 -2.2024 40 1 7.9158 -11.1186 -1.2942 41 1 6.8646 -9.3542 0.0180 42 1 4.7397 -8.3373 0.9103 43 1 -1.0640 -3.3912 2.4437 44 1 -0.5994 -1.7590 0.6147 45 1 -0.5271 -2.4846 -1.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083637024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = 0.856657 kcal Electronic energy + Delta-G solvation = -28519.981053 eV Core-core repulsion = 24503.105856 eV Total energy + Delta-G solvation = -4016.875197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.05972 -39.77666 -38.17453 -37.35203 -34.77060 -33.97640 -33.31752 -32.79396 -31.67294 -30.01165 -28.96299 -28.05218 -26.76027 -24.55916 -24.13124 -23.11459 -22.43399 -20.81337 -20.39768 -19.77781 -18.03502 -17.55463 -17.31603 -16.82212 -16.75291 -16.65749 -15.47155 -15.15835 -15.07672 -14.84649 -14.44578 -14.43990 -14.20381 -13.88629 -13.87211 -13.65846 -13.05851 -12.98708 -12.87930 -12.62870 -12.18176 -12.11875 -11.94551 -11.73550 -11.36681 -11.26186 -11.10601 -10.88149 -10.64849 -10.41227 -10.39138 -10.07758 -9.87114 -9.79756 -9.70757 -9.29084 -9.07491 -8.75004 -8.69976 -8.26394 -6.88018 -5.72318 -3.12197 0.16265 0.68342 1.73273 2.74370 2.78132 3.37261 3.39884 3.43039 3.45241 3.90150 4.17578 4.28792 4.35132 4.45419 4.57344 4.59491 4.63827 4.78433 4.91680 5.01403 5.08449 5.16504 5.28131 5.31529 5.34231 5.38969 5.46138 5.49502 5.59605 5.69447 5.83661 5.85117 5.89048 6.01704 6.13081 6.24247 6.29160 6.42397 6.50809 6.62076 6.67220 6.91091 7.22605 7.53248 7.68366 7.75254 7.77495 8.07729 8.28257 8.42037 9.15373 9.76339 10.39486 11.32881 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.002222 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.084918 B =12595.452779 C =13651.719820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.013 4.013 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.132 3.868 11 C 0.143 3.857 12 H 0.099 0.901 13 N -0.708 5.708 14 C 0.510 3.490 15 O -0.537 6.537 16 C -0.108 4.108 17 C -0.036 4.036 18 C -0.100 4.100 19 C -0.089 4.089 20 C -0.113 4.113 21 C 0.144 3.856 22 N -0.493 5.493 23 C 0.070 3.930 24 C -0.152 4.152 25 C -0.021 4.021 26 C -0.099 4.099 27 C 0.067 3.933 28 H 0.059 0.941 29 O -0.561 6.561 30 C 0.127 3.873 31 H 0.252 0.748 32 H 0.029 0.971 33 H 0.027 0.973 34 H 0.408 0.592 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.134 0.866 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.379 0.621 44 H 0.116 0.884 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.223 -22.695 4.288 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.005 3.995 11 C 0.038 3.962 12 H 0.117 0.883 13 N -0.359 5.359 14 C 0.295 3.705 15 O -0.413 6.413 16 C -0.148 4.148 17 C -0.038 4.038 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.115 4.115 21 C -0.027 4.027 22 N -0.201 5.201 23 C -0.072 4.072 24 C -0.171 4.171 25 C -0.026 4.026 26 C -0.117 4.117 27 C 0.007 3.993 28 H 0.077 0.923 29 O -0.367 6.367 30 C 0.001 3.999 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.243 0.757 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.169 0.831 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.227 0.773 44 H 0.133 0.867 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.550 -23.400 2.892 23.843 hybrid contribution -0.610 2.037 0.895 2.307 sum 2.940 -21.363 3.788 21.894 Atomic orbital electron populations 1.69718 1.04913 1.24833 1.58199 1.24761 0.95779 0.97724 1.02500 0.86029 0.78521 0.83105 0.77605 1.21600 1.21631 1.20690 1.19097 0.90576 0.82284 1.42502 0.90424 1.44281 1.01428 0.99711 1.86856 1.21580 0.93873 0.85607 0.98451 1.22136 0.95182 0.84991 0.93933 0.88266 1.45844 1.58524 1.17337 1.14243 1.20412 0.78049 0.83381 0.88660 1.90742 1.52703 1.80675 1.17209 1.20783 1.02399 0.93462 0.98194 1.19149 0.93420 0.94572 0.96655 1.20788 1.00160 0.94026 0.96879 1.20907 0.92653 0.99034 0.98279 1.19030 0.94921 0.97144 1.00413 1.23179 0.89938 0.95890 0.93731 1.67406 1.08272 1.24568 1.19838 1.22141 1.00171 0.90676 0.94248 1.21935 0.93984 1.00385 1.00815 1.18130 0.93579 0.94579 0.96277 1.20803 0.93997 0.97806 0.99093 1.23620 0.95588 0.98720 0.81417 0.92344 1.86229 1.54614 1.76904 1.18995 1.22630 0.85917 0.92404 0.98926 0.93708 0.95354 0.95518 0.75656 0.87618 0.87679 0.85559 0.84864 0.82115 0.83126 0.84464 0.85124 0.77304 0.86698 0.96030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.33 10.09 55.49 0.56 -25.77 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 3 Si 0.92 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.05 10.27 -15.06 -0.15 -6.21 16 8 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 9 N -0.60 -15.27 3.40 -169.95 -0.58 -15.84 16 10 C 0.13 2.91 7.00 -3.07 -0.02 2.88 16 11 C 0.14 2.58 3.15 -66.09 -0.21 2.37 16 12 H 0.10 1.86 7.62 -51.93 -0.40 1.47 16 13 N -0.71 -10.24 5.08 -52.03 -0.26 -10.50 16 14 C 0.51 7.21 7.82 -10.98 -0.09 7.13 16 15 O -0.54 -9.87 15.72 5.55 0.09 -9.78 16 16 C -0.11 -1.03 5.80 -29.03 -0.17 -1.20 16 17 C -0.04 -0.39 4.34 -104.93 -0.46 -0.85 16 18 C -0.10 -0.99 9.58 -39.90 -0.38 -1.37 16 19 C -0.09 -0.82 9.81 -39.52 -0.39 -1.21 16 20 C -0.11 -1.22 5.74 -106.86 -0.61 -1.83 16 21 C 0.14 1.44 11.05 -16.98 -0.19 1.25 16 22 N -0.49 -5.61 10.30 -13.15 -0.14 -5.75 16 23 C 0.07 0.72 11.07 -17.96 -0.20 0.52 16 24 C -0.15 -1.54 9.88 -39.40 -0.39 -1.93 16 25 C -0.02 -0.24 5.75 -106.81 -0.61 -0.85 16 26 C -0.10 -1.11 9.42 -39.56 -0.37 -1.48 16 27 C 0.07 1.18 4.31 -24.48 -0.11 1.07 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 O -0.56 -9.07 12.23 -35.23 -0.43 -9.50 16 30 C 0.13 2.93 5.62 -2.42 -0.01 2.92 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.41 5.16 7.58 -40.82 -0.31 4.85 16 35 H 0.11 0.81 8.07 -51.92 -0.42 0.40 16 36 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.38 4.90 9.12 45.56 0.42 5.32 16 44 H 0.12 2.93 5.87 -51.93 -0.31 2.62 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -35.14 377.05 -9.76 -44.89 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.20 Total: 8.82 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -4.45 Total: 0.75 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.42 Total: -57.86 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.34 Total: -19.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.14 -9.76 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083637024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.750 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds