Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99597 * 2 1 4 4 H 1.48505 * 109.47084 * 270.00218 * 3 2 1 5 5 H 1.48498 * 109.47418 * 30.00174 * 3 2 1 6 6 H 1.48503 * 109.46728 * 150.00419 * 3 2 1 7 7 C 1.38805 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00426 * 359.97438 * 7 2 1 10 10 C 1.47015 * 125.64968 * 180.02562 * 9 7 2 11 11 C 1.54327 * 107.27178 * 178.97794 * 10 9 7 12 12 H 1.08999 * 110.71901 * 96.34149 * 11 10 9 13 13 N 1.46497 * 110.72198 * 219.44621 * 11 10 9 14 14 C 1.34777 * 119.99525 * 271.15203 * 13 11 10 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 11 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 11 17 17 C 1.50703 * 109.47148 * 180.28037 * 16 14 13 18 18 C 1.39375 * 119.48668 * 269.72814 * 17 16 14 19 19 C 1.36178 * 121.08482 * 179.70884 * 18 17 16 20 20 C 1.40374 * 119.51170 * 0.55647 * 19 18 17 21 21 C 1.40436 * 122.07918 * 179.72859 * 20 19 18 22 22 N 1.31244 * 119.88451 * 180.02562 * 21 20 19 23 23 C 1.32606 * 122.77421 * 359.97438 * 22 21 20 24 24 C 1.36174 * 121.87938 * 359.97438 * 23 22 21 25 25 C 1.40695 * 118.66753 * 0.02562 * 24 23 22 26 26 C 1.36214 * 119.49346 * 89.99788 * 17 16 14 27 27 C 1.55159 * 103.10062 * 337.89860 * 11 10 9 28 28 H 1.08994 * 111.00616 * 153.48974 * 27 11 10 29 29 O 1.42908 * 111.00108 * 277.33551 * 27 11 10 30 30 C 1.47424 * 125.64349 * 0.04801 * 9 7 2 31 31 H 0.97000 * 119.99901 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.88553 * 59.56438 * 10 9 7 33 33 H 1.09004 * 110.00988 * 298.46543 * 10 9 7 34 34 H 0.97000 * 120.00580 * 91.15949 * 13 11 10 35 35 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 36 36 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 37 37 H 1.08001 * 119.46156 * 359.97438 * 18 17 16 38 38 H 1.07994 * 120.24500 * 180.25995 * 19 18 17 39 39 H 1.07997 * 120.05661 * 0.02562 * 21 20 19 40 40 H 1.07998 * 119.06437 * 179.97438 * 23 22 21 41 41 H 1.07996 * 120.67222 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.25951 * 359.97438 * 26 17 16 43 43 H 0.96699 * 113.99576 * 179.97438 * 29 27 11 44 44 H 1.09003 * 110.36642 * 322.92719 * 30 9 7 45 45 H 1.08993 * 110.36884 * 85.13982 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 1.9320 -3.7274 -0.0005 11 6 0.7786 -4.7524 0.0257 12 1 0.5488 -5.1002 -0.9814 13 7 1.1082 -5.8813 0.8994 14 6 1.7584 -6.9515 0.4011 15 8 2.0711 -6.9799 -0.7704 16 6 2.1029 -8.1101 1.3012 17 6 2.8278 -9.1655 0.5063 18 6 2.0982 -10.1740 -0.1206 19 6 2.7193 -11.1405 -0.8518 20 6 4.1183 -11.1285 -0.9671 21 6 4.8144 -12.1015 -1.7026 22 7 6.1234 -12.0492 -1.7814 23 6 6.8410 -11.1038 -1.1900 24 6 6.2613 -10.1149 -0.4550 25 6 4.8605 -10.1038 -0.3242 26 6 4.1863 -9.1222 0.4162 27 6 -0.4050 -3.9352 0.6077 28 1 -1.3604 -4.3374 0.2708 29 8 -0.3446 -3.8916 2.0348 30 6 -0.1414 -2.5332 -0.0010 31 1 -0.4850 0.8400 0.0004 32 1 2.5579 -3.8510 0.8832 33 1 2.5305 -3.8658 -0.9010 34 1 0.8584 -5.8585 1.8364 35 1 2.7431 -7.7624 2.1121 36 1 1.1879 -8.5324 1.7163 37 1 1.0222 -10.1869 -0.0286 38 1 2.1403 -11.9133 -1.3353 39 1 4.2735 -12.8914 -2.2024 40 1 7.9158 -11.1186 -1.2942 41 1 6.8646 -9.3542 0.0180 42 1 4.7397 -8.3373 0.9103 43 1 -1.0640 -3.3912 2.4437 44 1 -0.5994 -1.7590 0.6147 45 1 -0.5271 -2.4846 -1.0192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083637024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = -24.634581 kcal Electronic energy + Delta-G solvation = -28521.086436 eV Core-core repulsion = 24503.105856 eV Total energy + Delta-G solvation = -4017.980580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.82207 -40.98321 -39.51407 -38.28794 -36.36777 -35.40863 -34.08454 -33.75608 -33.35330 -30.79406 -30.43982 -29.34552 -28.25475 -26.36336 -24.90733 -24.00029 -23.19247 -22.42658 -21.77084 -21.19775 -19.25538 -18.75664 -18.28543 -18.14983 -17.84995 -17.54534 -16.92254 -16.66658 -16.18001 -15.89517 -15.80305 -15.51374 -15.22321 -15.00417 -14.78358 -14.68247 -14.48708 -14.38486 -14.28514 -13.60635 -13.53726 -13.23014 -13.01645 -12.93002 -12.80701 -12.74310 -12.68055 -12.24041 -12.13126 -11.95229 -11.90720 -11.84395 -11.16150 -11.01779 -10.86341 -10.72155 -10.47892 -10.06867 -9.87878 -9.00295 -8.91927 -7.82529 -5.25930 -0.57155 -0.09080 0.98337 1.45067 1.46591 1.55229 1.65309 1.94248 2.32407 2.48718 3.11935 3.23319 3.28500 3.49195 3.56736 3.62796 3.64651 3.85513 3.88739 3.93211 3.94404 4.04321 4.12814 4.24574 4.31312 4.37806 4.49680 4.50844 4.62067 4.71306 4.73604 4.80674 4.84662 4.86603 5.00287 5.13423 5.14276 5.33175 5.39733 5.44502 5.51547 5.54336 5.70702 5.70903 5.91151 6.24566 6.64352 6.91898 7.00365 7.07275 7.31585 7.71749 8.34199 9.19400 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.002222 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.084918 B =12595.452779 C =13651.719820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.617 5.617 10 C 0.132 3.868 11 C 0.155 3.845 12 H 0.092 0.908 13 N -0.698 5.698 14 C 0.510 3.490 15 O -0.582 6.582 16 C -0.097 4.097 17 C -0.046 4.046 18 C -0.113 4.113 19 C -0.087 4.087 20 C -0.131 4.131 21 C 0.142 3.858 22 N -0.517 5.517 23 C 0.060 3.940 24 C -0.163 4.163 25 C -0.044 4.044 26 C -0.119 4.119 27 C 0.092 3.908 28 H 0.095 0.905 29 O -0.561 6.561 30 C 0.125 3.875 31 H 0.250 0.750 32 H 0.024 0.976 33 H 0.005 0.995 34 H 0.420 0.580 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.164 0.836 39 H 0.191 0.809 40 H 0.171 0.829 41 H 0.153 0.847 42 H 0.134 0.866 43 H 0.396 0.604 44 H 0.091 0.909 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -24.154 5.460 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.253 4.253 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.343 5.343 10 C 0.005 3.995 11 C 0.049 3.951 12 H 0.110 0.890 13 N -0.350 5.350 14 C 0.298 3.702 15 O -0.462 6.462 16 C -0.136 4.136 17 C -0.048 4.048 18 C -0.131 4.131 19 C -0.106 4.106 20 C -0.133 4.133 21 C -0.029 4.029 22 N -0.226 5.226 23 C -0.082 4.082 24 C -0.182 4.182 25 C -0.049 4.049 26 C -0.137 4.137 27 C 0.031 3.969 28 H 0.113 0.887 29 O -0.369 6.369 30 C -0.001 4.001 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.023 0.977 34 H 0.258 0.742 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.182 0.818 39 H 0.208 0.792 40 H 0.188 0.812 41 H 0.170 0.830 42 H 0.152 0.848 43 H 0.246 0.754 44 H 0.109 0.891 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.731 -24.883 4.112 25.368 hybrid contribution -0.336 2.476 0.502 2.548 sum 2.395 -22.407 4.614 23.002 Atomic orbital electron populations 1.69943 1.05889 1.25241 1.58374 1.25552 0.96770 1.00636 1.02360 0.85059 0.77633 0.79092 0.77396 1.21548 1.21303 1.19828 1.19378 0.90809 0.83831 1.43048 0.90985 1.44555 1.02714 1.00286 1.86731 1.21640 0.95224 0.85596 0.97033 1.21740 0.93556 0.85254 0.94595 0.88970 1.45703 1.58614 1.16339 1.14357 1.21208 0.76510 0.83894 0.88567 1.90732 1.54291 1.81574 1.19568 1.20818 1.04353 0.91146 0.97324 1.19401 0.93401 0.95148 0.96866 1.21123 1.01333 0.93868 0.96788 1.21292 0.92196 0.99493 0.97639 1.19327 0.95904 0.97324 1.00761 1.23684 0.89751 0.96245 0.93207 1.67453 1.09080 1.25313 1.20734 1.22511 1.01233 0.90474 0.94001 1.22158 0.93957 1.00943 1.01142 1.18456 0.94390 0.95216 0.96853 1.20983 0.94676 0.98203 0.99802 1.23284 0.96801 0.94817 0.81958 0.88723 1.86195 1.55868 1.77047 1.17828 1.22550 0.84443 0.95458 0.97609 0.94028 0.95827 0.97690 0.74184 0.85453 0.84045 0.83390 0.81823 0.79220 0.81191 0.82977 0.84778 0.75368 0.89113 0.98439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.45 10.09 21.65 0.22 -54.23 16 2 C -0.06 -3.40 5.49 84.86 0.47 -2.94 16 3 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.24 -13.83 10.27 84.03 0.86 -12.97 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.62 -32.24 3.40 -691.61 -2.35 -34.59 16 10 C 0.13 5.91 7.00 86.73 0.61 6.51 16 11 C 0.16 5.46 3.15 46.18 0.15 5.60 16 12 H 0.09 3.42 7.62 -2.39 -0.02 3.40 16 13 N -0.70 -18.70 5.08 -436.91 -2.22 -20.92 16 14 C 0.51 13.50 7.82 87.66 0.69 14.19 16 15 O -0.58 -21.10 15.72 -3.04 -0.05 -21.15 16 16 C -0.10 -1.57 5.80 29.10 0.17 -1.40 16 17 C -0.05 -0.92 4.34 -20.06 -0.09 -1.01 16 18 C -0.11 -1.96 9.58 22.06 0.21 -1.75 16 19 C -0.09 -1.43 9.81 22.31 0.22 -1.21 16 20 C -0.13 -2.70 5.74 -21.31 -0.12 -2.82 16 21 C 0.14 2.69 11.05 85.32 0.94 3.63 16 22 N -0.52 -11.50 10.30 -195.53 -2.01 -13.52 16 23 C 0.06 1.21 11.07 84.10 0.93 2.14 16 24 C -0.16 -3.31 9.88 22.39 0.22 -3.09 16 25 C -0.04 -1.00 5.75 -21.28 -0.12 -1.13 16 26 C -0.12 -2.59 9.42 22.28 0.21 -2.38 16 27 C 0.09 3.08 4.31 32.06 0.14 3.22 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 O -0.56 -16.71 12.23 -148.98 -1.82 -18.53 16 30 C 0.12 5.83 5.62 86.92 0.49 6.32 16 31 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 32 H 0.02 1.07 8.03 -2.39 -0.02 1.05 16 33 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 34 H 0.42 9.29 7.58 -92.71 -0.70 8.59 16 35 H 0.13 1.54 8.07 -2.38 -0.02 1.52 16 36 H 0.14 1.29 8.08 -2.39 -0.02 1.27 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 38 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 40 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 43 H 0.40 9.17 9.12 -74.06 -0.68 8.50 16 44 H 0.09 4.70 5.87 -2.39 -0.01 4.68 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -78.61 377.05 -0.58 -79.19 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -0.34 Total: 25.22 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.97 Total: 10.92 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -6.36 Total: -123.26 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.87 Total: -39.68 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.61 -0.58 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083637024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.559 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds