Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48497 * 109.47426 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47209 * 300.00347 * 3 2 1 6 6 H 1.48504 * 109.47141 * 60.00248 * 3 2 1 7 7 C 1.38818 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99947 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99724 * 359.97438 * 7 2 1 10 10 C 1.47474 * 125.62920 * 180.02562 * 9 7 2 11 11 C 1.54908 * 104.80937 * 204.05076 * 10 9 7 12 12 H 1.09004 * 111.00254 * 81.13908 * 11 10 9 13 13 N 1.46506 * 110.99923 * 204.94594 * 11 10 9 14 14 C 1.34773 * 119.99968 * 270.41578 * 13 11 10 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 11 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 11 17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 13 18 18 C 1.36114 * 120.12448 * 264.99971 * 17 16 14 19 19 C 1.39317 * 121.06055 * 180.02562 * 18 17 16 20 20 C 1.36174 * 120.87310 * 359.95170 * 19 18 17 21 21 C 1.40385 * 119.61726 * 0.02562 * 20 19 18 22 22 C 1.40776 * 121.39015 * 180.02562 * 21 20 19 23 23 C 1.36587 * 118.14510 * 179.13093 * 22 21 20 24 24 C 1.39325 * 119.94129 * 0.88321 * 23 22 21 25 25 N 1.31087 * 121.75552 * 359.38564 * 24 23 22 26 26 C 1.33694 * 121.31647 * 0.02606 * 25 24 23 27 27 C 1.55150 * 101.61795 * 323.03950 * 11 10 9 28 28 H 1.09000 * 110.71864 * 154.02511 * 27 11 10 29 29 O 1.42906 * 110.72116 * 277.12088 * 27 11 10 30 30 C 1.47019 * 125.65107 * 359.97438 * 9 7 2 31 31 H 0.97002 * 119.99552 * 359.97438 * 1 2 3 32 32 H 1.08994 * 110.35134 * 85.23099 * 10 9 7 33 33 H 1.09001 * 110.40196 * 322.89785 * 10 9 7 34 34 H 0.96998 * 119.99507 * 90.42434 * 13 11 10 35 35 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 36 36 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 37 37 H 1.07996 * 119.46809 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.55945 * 179.97438 * 19 18 17 39 39 H 1.08000 * 120.18863 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.91999 * 359.97438 * 22 21 20 41 41 H 1.07999 * 120.02485 * 180.27162 * 23 22 21 42 42 H 1.08003 * 119.12510 * 179.41429 * 24 23 22 43 43 H 0.96701 * 113.99858 * 179.97438 * 29 27 11 44 44 H 1.08996 * 109.88465 * 59.57732 * 30 9 7 45 45 H 1.09001 * 109.88169 * 298.40812 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9340 -3.7314 -0.0005 11 6 0.8516 -4.6563 -0.6109 12 1 0.8561 -4.5976 -1.6993 13 7 1.0290 -6.0395 -0.1618 14 6 1.8112 -6.8815 -0.8657 15 8 2.3644 -6.4956 -1.8737 16 6 1.9932 -8.3045 -0.4041 17 6 2.9016 -9.0312 -1.3621 18 6 2.3743 -9.7710 -2.3755 19 6 3.1958 -10.4511 -3.2720 20 6 4.5516 -10.3933 -3.1592 21 6 5.1304 -9.6393 -2.1261 22 6 6.5274 -9.5533 -1.9750 23 6 7.0194 -8.7865 -0.9574 24 6 6.1437 -8.1319 -0.0938 25 7 4.8432 -8.2188 -0.2337 26 6 4.2968 -8.9431 -1.2156 27 6 -0.4485 -4.0441 -0.0261 28 1 -1.2992 -4.2544 -0.6742 29 8 -0.6883 -4.5338 1.2949 30 6 -0.1375 -2.5327 0.0005 31 1 -0.4849 0.8401 0.0004 32 1 2.1678 -4.0416 1.0178 33 1 2.8330 -3.7413 -0.6168 34 1 0.5833 -6.3493 0.6422 35 1 2.4365 -8.3095 0.5917 36 1 1.0244 -8.8031 -0.3729 37 1 1.3018 -9.8319 -2.4866 38 1 2.7514 -11.0314 -4.0671 39 1 5.1781 -10.9245 -3.8605 40 1 7.1916 -10.0682 -2.6533 41 1 8.0863 -8.6956 -0.8164 42 1 6.5470 -7.5367 0.7121 43 1 -1.4895 -4.1810 1.7057 44 1 -0.5582 -2.0523 -0.8828 45 1 -0.5537 -2.0843 0.9027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083684477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = 2.618352 kcal Electronic energy + Delta-G solvation = -29121.574256 eV Core-core repulsion = 25104.775452 eV Total energy + Delta-G solvation = -4016.798804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.04788 -39.48408 -37.91592 -37.14159 -34.79983 -34.19323 -33.79604 -31.79090 -31.28068 -30.66414 -28.70078 -27.76087 -26.55785 -24.45639 -24.20373 -23.71131 -21.74559 -20.52659 -20.16024 -19.74143 -18.41284 -17.44412 -17.10627 -16.96391 -16.63854 -16.57930 -15.29431 -15.11199 -14.75730 -14.66147 -14.43921 -14.25315 -14.00628 -13.89653 -13.60806 -13.19134 -13.15740 -12.95169 -12.66806 -12.59885 -12.27266 -11.90162 -11.83656 -11.73004 -11.36700 -11.23984 -10.89997 -10.82255 -10.60495 -10.46418 -10.38254 -10.06411 -9.77985 -9.57914 -9.52650 -9.26518 -8.87883 -8.64952 -8.53945 -8.28625 -6.82958 -5.71589 -3.03926 0.25770 0.72196 1.85218 2.79883 2.99247 3.41549 3.46886 3.49303 3.53181 4.02068 4.21173 4.35291 4.52343 4.57882 4.61652 4.63621 4.74863 4.89568 4.99813 5.15020 5.18235 5.24011 5.31617 5.35790 5.43549 5.48511 5.59009 5.66844 5.78319 5.84781 5.88080 5.92685 5.93936 6.15250 6.24110 6.28416 6.29895 6.39212 6.71564 6.73104 6.75891 7.03610 7.37598 7.48391 7.76497 7.84949 7.94784 8.11705 8.23586 8.62158 9.21821 9.81882 10.46909 11.40855 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.002725 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.160328 B =10272.541034 C =11422.647927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.133 3.867 11 C 0.141 3.859 12 H 0.101 0.899 13 N -0.710 5.710 14 C 0.519 3.481 15 O -0.538 6.538 16 C -0.097 4.097 17 C -0.032 4.032 18 C -0.096 4.096 19 C -0.111 4.111 20 C -0.102 4.102 21 C -0.102 4.102 22 C -0.061 4.061 23 C -0.176 4.176 24 C 0.130 3.870 25 N -0.464 5.464 26 C 0.142 3.858 27 C 0.068 3.932 28 H 0.060 0.940 29 O -0.567 6.567 30 C 0.155 3.845 31 H 0.251 0.749 32 H 0.026 0.974 33 H 0.042 0.958 34 H 0.406 0.594 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.159 0.841 43 H 0.379 0.621 44 H 0.055 0.945 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 -24.371 -2.003 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.005 3.995 11 C 0.035 3.965 12 H 0.119 0.881 13 N -0.361 5.361 14 C 0.304 3.696 15 O -0.415 6.415 16 C -0.137 4.137 17 C -0.033 4.033 18 C -0.116 4.116 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.104 4.104 22 C -0.087 4.087 23 C -0.196 4.196 24 C -0.042 4.042 25 N -0.172 5.172 26 C 0.021 3.979 27 C 0.008 3.992 28 H 0.078 0.922 29 O -0.373 6.373 30 C 0.029 3.971 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.241 0.759 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.176 0.824 43 H 0.226 0.774 44 H 0.073 0.927 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.459 -23.762 -2.318 24.490 hybrid contribution 0.333 0.810 -0.128 0.885 sum 5.792 -22.952 -2.445 23.797 Atomic orbital electron populations 1.69925 1.04889 1.24916 1.57808 1.24786 0.95785 0.97673 1.02406 0.85999 0.78782 0.83580 0.77180 1.20468 1.21756 1.21775 1.19152 0.90588 0.82217 1.43001 0.90262 1.44307 1.01268 0.99970 1.87274 1.21828 0.94592 0.85633 0.97406 1.22282 0.95173 0.79852 0.99183 0.88120 1.45738 1.49580 1.11319 1.29498 1.20311 0.78556 0.86940 0.83753 1.90712 1.47252 1.77964 1.25564 1.20552 0.99814 0.92903 1.00430 1.18968 0.91191 0.96683 0.96470 1.20765 1.00376 0.96671 0.93760 1.20854 0.93612 0.99383 0.99034 1.20931 0.95407 0.98644 0.97127 1.18801 0.94177 0.99967 0.97487 1.21432 0.93780 0.96504 0.96949 1.21885 1.01548 0.99212 0.96976 1.22988 0.88634 0.95250 0.97363 1.68014 1.13694 1.15411 1.20032 1.18628 0.93447 0.94044 0.91809 1.23509 0.95614 0.96925 0.83162 0.92225 1.86256 1.49193 1.71573 1.30287 1.21845 0.85570 0.87773 1.01863 0.93836 0.95607 0.93927 0.75896 0.87092 0.88243 0.85347 0.85497 0.85428 0.84590 0.84638 0.82420 0.77380 0.92738 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 10.31 55.49 0.57 -26.68 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.98 3.40 -170.04 -0.58 -16.56 16 10 C 0.13 3.07 6.92 -2.50 -0.02 3.06 16 11 C 0.14 2.74 3.25 -65.78 -0.21 2.53 16 12 H 0.10 2.11 7.63 -51.93 -0.40 1.71 16 13 N -0.71 -11.44 5.18 -51.73 -0.27 -11.71 16 14 C 0.52 8.53 7.82 -10.98 -0.09 8.44 16 15 O -0.54 -11.12 15.72 5.56 0.09 -11.03 16 16 C -0.10 -1.20 5.56 -29.03 -0.16 -1.36 16 17 C -0.03 -0.42 4.38 -104.51 -0.46 -0.88 16 18 C -0.10 -1.05 9.57 -39.94 -0.38 -1.43 16 19 C -0.11 -1.06 9.95 -39.92 -0.40 -1.46 16 20 C -0.10 -1.01 9.78 -39.52 -0.39 -1.39 16 21 C -0.10 -1.23 5.74 -106.80 -0.61 -1.84 16 22 C -0.06 -0.58 9.90 -39.22 -0.39 -0.97 16 23 C -0.18 -1.65 10.03 -39.77 -0.40 -2.05 16 24 C 0.13 1.51 11.14 -17.47 -0.19 1.31 16 25 N -0.46 -6.75 9.51 -10.97 -0.10 -6.85 16 26 C 0.14 2.02 6.58 -84.85 -0.56 1.46 16 27 C 0.07 1.25 4.20 -24.90 -0.10 1.15 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 O -0.57 -9.19 12.13 -35.23 -0.43 -9.62 16 30 C 0.15 3.72 5.14 -3.07 -0.02 3.70 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.41 5.70 7.57 -40.82 -0.31 5.40 16 35 H 0.11 1.32 7.72 -51.93 -0.40 0.92 16 36 H 0.10 0.89 8.04 -51.93 -0.42 0.47 16 37 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 38 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 43 H 0.38 4.75 9.12 45.56 0.42 5.16 16 44 H 0.05 1.44 7.38 -51.93 -0.38 1.05 16 45 H 0.05 1.37 7.43 -51.93 -0.39 0.98 16 LS Contribution 376.65 15.07 5.68 5.68 Total: -1.00 -36.79 376.65 -9.92 -46.71 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.23 Total: 9.20 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -4.63 Total: 3.30 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.38 Total: -61.81 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.34 Total: -20.65 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.79 -9.92 -46.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083684477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.329 kcal (2) G-P(sol) polarization free energy of solvation -36.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds