Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48497 * 109.47426 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47209 * 300.00347 * 3 2 1 6 6 H 1.48504 * 109.47141 * 60.00248 * 3 2 1 7 7 C 1.38818 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99947 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99724 * 359.97438 * 7 2 1 10 10 C 1.47474 * 125.62920 * 180.02562 * 9 7 2 11 11 C 1.54908 * 104.80937 * 204.05076 * 10 9 7 12 12 H 1.09004 * 111.00254 * 81.13908 * 11 10 9 13 13 N 1.46506 * 110.99923 * 204.94594 * 11 10 9 14 14 C 1.34773 * 119.99968 * 270.41578 * 13 11 10 15 15 O 1.21283 * 120.00360 * 359.73034 * 14 13 11 16 16 C 1.50706 * 120.00081 * 180.02562 * 14 13 11 17 17 C 1.50696 * 109.47259 * 179.72770 * 16 14 13 18 18 C 1.36114 * 120.12448 * 264.99971 * 17 16 14 19 19 C 1.39317 * 121.06055 * 180.02562 * 18 17 16 20 20 C 1.36174 * 120.87310 * 359.95170 * 19 18 17 21 21 C 1.40385 * 119.61726 * 0.02562 * 20 19 18 22 22 C 1.40776 * 121.39015 * 180.02562 * 21 20 19 23 23 C 1.36587 * 118.14510 * 179.13093 * 22 21 20 24 24 C 1.39325 * 119.94129 * 0.88321 * 23 22 21 25 25 N 1.31087 * 121.75552 * 359.38564 * 24 23 22 26 26 C 1.33694 * 121.31647 * 0.02606 * 25 24 23 27 27 C 1.55150 * 101.61795 * 323.03950 * 11 10 9 28 28 H 1.09000 * 110.71864 * 154.02511 * 27 11 10 29 29 O 1.42906 * 110.72116 * 277.12088 * 27 11 10 30 30 C 1.47019 * 125.65107 * 359.97438 * 9 7 2 31 31 H 0.97002 * 119.99552 * 359.97438 * 1 2 3 32 32 H 1.08994 * 110.35134 * 85.23099 * 10 9 7 33 33 H 1.09001 * 110.40196 * 322.89785 * 10 9 7 34 34 H 0.96998 * 119.99507 * 90.42434 * 13 11 10 35 35 H 1.09001 * 109.46564 * 299.73030 * 16 14 13 36 36 H 1.08998 * 109.47012 * 59.72084 * 16 14 13 37 37 H 1.07996 * 119.46809 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.55945 * 179.97438 * 19 18 17 39 39 H 1.08000 * 120.18863 * 180.02562 * 20 19 18 40 40 H 1.07997 * 120.91999 * 359.97438 * 22 21 20 41 41 H 1.07999 * 120.02485 * 180.27162 * 23 22 21 42 42 H 1.08003 * 119.12510 * 179.41429 * 24 23 22 43 43 H 0.96701 * 113.99858 * 179.97438 * 29 27 11 44 44 H 1.08996 * 109.88465 * 59.57732 * 30 9 7 45 45 H 1.09001 * 109.88169 * 298.40812 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 1.9340 -3.7314 -0.0005 11 6 0.8516 -4.6563 -0.6109 12 1 0.8561 -4.5976 -1.6993 13 7 1.0290 -6.0395 -0.1618 14 6 1.8112 -6.8815 -0.8657 15 8 2.3644 -6.4956 -1.8737 16 6 1.9932 -8.3045 -0.4041 17 6 2.9016 -9.0312 -1.3621 18 6 2.3743 -9.7710 -2.3755 19 6 3.1958 -10.4511 -3.2720 20 6 4.5516 -10.3933 -3.1592 21 6 5.1304 -9.6393 -2.1261 22 6 6.5274 -9.5533 -1.9750 23 6 7.0194 -8.7865 -0.9574 24 6 6.1437 -8.1319 -0.0938 25 7 4.8432 -8.2188 -0.2337 26 6 4.2968 -8.9431 -1.2156 27 6 -0.4485 -4.0441 -0.0261 28 1 -1.2992 -4.2544 -0.6742 29 8 -0.6883 -4.5338 1.2949 30 6 -0.1375 -2.5327 0.0005 31 1 -0.4849 0.8401 0.0004 32 1 2.1678 -4.0416 1.0178 33 1 2.8330 -3.7413 -0.6168 34 1 0.5833 -6.3493 0.6422 35 1 2.4365 -8.3095 0.5917 36 1 1.0244 -8.8031 -0.3729 37 1 1.3018 -9.8319 -2.4866 38 1 2.7514 -11.0314 -4.0671 39 1 5.1781 -10.9245 -3.8605 40 1 7.1916 -10.0682 -2.6533 41 1 8.0863 -8.6956 -0.8164 42 1 6.5470 -7.5367 0.7121 43 1 -1.4895 -4.1810 1.7057 44 1 -0.5582 -2.0523 -0.8828 45 1 -0.5537 -2.0843 0.9027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083684477.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -24.926529 kcal Electronic energy + Delta-G solvation = -29122.768691 eV Core-core repulsion = 25104.775452 eV Total energy + Delta-G solvation = -4017.993240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.88046 -40.87629 -39.43244 -37.99020 -36.47161 -35.40189 -35.00898 -33.62632 -32.30386 -31.43152 -30.39453 -29.20515 -28.04914 -26.30885 -25.08815 -24.49245 -22.92008 -22.25323 -21.61362 -21.12630 -19.25320 -19.16323 -18.35028 -18.01541 -17.84950 -17.65505 -16.94029 -16.62240 -16.16031 -15.79712 -15.51303 -15.47868 -15.20676 -14.95836 -14.81640 -14.67910 -14.48782 -14.25014 -14.00527 -13.88129 -13.78790 -13.21782 -12.98745 -12.80069 -12.74462 -12.63726 -12.51934 -12.30575 -12.12045 -12.09237 -11.93376 -11.89008 -11.43817 -10.93770 -10.83350 -10.79204 -10.38623 -10.05028 -9.67077 -9.09079 -8.97370 -7.91090 -5.27115 -0.51143 -0.07239 1.04715 1.43148 1.44389 1.55067 1.69921 2.00326 2.23974 2.47805 3.14548 3.20900 3.27651 3.42516 3.57438 3.61609 3.80519 3.83590 3.91158 3.94574 4.05421 4.08902 4.18198 4.24683 4.31883 4.40650 4.48764 4.50127 4.58769 4.65436 4.66827 4.79429 4.90885 5.03647 5.10677 5.16794 5.18869 5.33228 5.44300 5.49098 5.49978 5.51852 5.62419 5.66193 5.99316 6.12150 6.65779 6.88574 7.02028 7.04550 7.34288 7.67870 8.32143 9.18967 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.002725 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.160328 B =10272.541034 C =11422.647927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.249 4.249 8 H 0.073 0.927 9 N -0.622 5.622 10 C 0.135 3.865 11 C 0.154 3.846 12 H 0.086 0.914 13 N -0.698 5.698 14 C 0.518 3.482 15 O -0.583 6.583 16 C -0.084 4.084 17 C -0.069 4.069 18 C -0.095 4.095 19 C -0.119 4.119 20 C -0.101 4.101 21 C -0.128 4.128 22 C -0.060 4.060 23 C -0.179 4.179 24 C 0.113 3.887 25 N -0.506 5.506 26 C 0.109 3.891 27 C 0.094 3.906 28 H 0.094 0.906 29 O -0.563 6.563 30 C 0.160 3.840 31 H 0.250 0.750 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.419 0.581 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.398 0.602 44 H 0.025 0.975 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -26.459 -2.581 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.253 4.253 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.349 5.349 10 C 0.008 3.992 11 C 0.047 3.953 12 H 0.104 0.896 13 N -0.351 5.351 14 C 0.306 3.694 15 O -0.463 6.463 16 C -0.124 4.124 17 C -0.070 4.070 18 C -0.115 4.115 19 C -0.136 4.136 20 C -0.119 4.119 21 C -0.129 4.129 22 C -0.086 4.086 23 C -0.198 4.198 24 C -0.059 4.059 25 N -0.215 5.215 26 C -0.012 4.012 27 C 0.034 3.966 28 H 0.111 0.889 29 O -0.372 6.372 30 C 0.035 3.965 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.257 0.743 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.189 0.811 41 H 0.186 0.814 42 H 0.189 0.811 43 H 0.249 0.751 44 H 0.043 0.957 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.643 -25.892 -2.854 26.653 hybrid contribution 0.334 1.429 0.054 1.469 sum 5.977 -24.462 -2.800 25.337 Atomic orbital electron populations 1.70118 1.06004 1.25496 1.57908 1.25619 0.96815 1.00781 1.02074 0.84980 0.77925 0.79164 0.77056 1.19610 1.21453 1.21280 1.19438 0.90820 0.83762 1.43760 0.90879 1.44585 1.02611 1.00496 1.87174 1.21831 0.95011 0.85459 0.96860 1.21851 0.94205 0.81123 0.98146 0.89579 1.45601 1.49744 1.09743 1.29964 1.21091 0.77097 0.88370 0.82809 1.90686 1.48843 1.79041 1.27723 1.20520 1.01766 0.89968 1.00111 1.19195 0.91229 0.98514 0.98048 1.21147 1.01787 0.95621 0.92939 1.21270 0.93672 0.99275 0.99428 1.21361 0.96123 0.97754 0.96678 1.19204 0.95323 1.00475 0.97947 1.21897 0.93398 0.96063 0.97210 1.22212 1.02875 0.98450 0.96302 1.23446 0.88506 0.95632 0.98359 1.67961 1.15167 1.16969 1.21375 1.19023 0.94455 0.95014 0.92679 1.23117 0.96049 0.92548 0.84901 0.88853 1.86220 1.50760 1.71014 1.29206 1.21725 0.83958 0.91606 0.99231 0.94041 0.96041 0.96306 0.74333 0.87073 0.84492 0.83277 0.82342 0.82248 0.81090 0.81366 0.81100 0.75062 0.95705 0.95402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.84 10.31 21.65 0.22 -56.61 16 2 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 3 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.25 -14.87 10.28 84.04 0.86 -14.01 16 8 H 0.07 4.31 7.83 -2.91 -0.02 4.28 16 9 N -0.62 -34.21 3.40 -691.88 -2.35 -36.56 16 10 C 0.14 6.49 6.92 86.85 0.60 7.10 16 11 C 0.15 6.02 3.25 46.38 0.15 6.18 16 12 H 0.09 3.68 7.63 -2.38 -0.02 3.66 16 13 N -0.70 -22.07 5.18 -435.96 -2.26 -24.33 16 14 C 0.52 17.01 7.82 87.66 0.69 17.70 16 15 O -0.58 -24.72 15.72 -3.04 -0.05 -24.77 16 16 C -0.08 -2.02 5.56 29.10 0.16 -1.86 16 17 C -0.07 -1.79 4.38 -19.79 -0.09 -1.88 16 18 C -0.10 -1.94 9.57 22.03 0.21 -1.73 16 19 C -0.12 -1.99 9.95 22.05 0.22 -1.77 16 20 C -0.10 -1.75 9.78 22.31 0.22 -1.54 16 21 C -0.13 -2.94 5.74 -21.28 -0.12 -3.06 16 22 C -0.06 -1.05 9.90 22.50 0.22 -0.83 16 23 C -0.18 -3.15 10.03 22.15 0.22 -2.93 16 24 C 0.11 2.65 11.14 85.07 0.95 3.60 16 25 N -0.51 -15.25 9.51 -188.63 -1.79 -17.04 16 26 C 0.11 3.13 6.58 40.29 0.27 3.40 16 27 C 0.09 3.39 4.20 31.78 0.13 3.52 16 28 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 29 O -0.56 -17.16 12.13 -148.98 -1.81 -18.97 16 30 C 0.16 7.87 5.14 86.73 0.45 8.31 16 31 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 32 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.42 11.06 7.57 -92.71 -0.70 10.36 16 35 H 0.11 2.64 7.72 -2.39 -0.02 2.62 16 36 H 0.14 2.12 8.04 -2.39 -0.02 2.10 16 37 H 0.15 2.23 8.04 -2.91 -0.02 2.20 16 38 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 42 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 43 H 0.40 9.02 9.12 -74.06 -0.68 8.35 16 44 H 0.02 1.35 7.38 -2.39 -0.02 1.33 16 45 H 0.03 1.49 7.43 -2.39 -0.02 1.47 16 Total: -1.00 -84.35 376.65 -0.74 -85.09 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.34 Total: 26.83 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 5.61 Total: 17.20 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -6.18 Total: -134.54 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -1.86 Total: -43.74 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -84.35 -0.74 -85.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083684477.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.168 kcal (2) G-P(sol) polarization free energy of solvation -84.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds