Wall clock time and date at job start Sat Apr 11 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00338 * 2 1 4 4 H 1.48493 * 109.47257 * 269.99622 * 3 2 1 5 5 H 1.48507 * 109.47158 * 29.99573 * 3 2 1 6 6 H 1.48503 * 109.47321 * 149.99196 * 3 2 1 7 7 C 1.38814 * 119.99550 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99594 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64583 * 180.02562 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.09666 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 N 1.46505 * 111.00202 * 204.91694 * 11 10 9 14 14 C 1.34778 * 120.00074 * 273.54598 * 13 11 10 15 15 O 1.21708 * 119.99775 * 0.02562 * 14 13 11 16 16 C 1.46578 * 119.99992 * 179.97438 * 14 13 11 17 17 C 1.38053 * 126.00822 * 180.02562 * 16 14 13 18 18 C 1.39366 * 107.44111 * 179.97438 * 17 16 14 19 19 C 1.37821 * 107.65402 * 359.97438 * 18 17 16 20 20 C 1.47812 * 125.82163 * 179.97438 * 19 18 17 21 21 C 1.39585 * 120.14417 * 179.70120 * 20 19 18 22 22 C 1.37958 * 119.85178 * 179.76633 * 21 20 19 23 23 C 1.38367 * 120.14313 * 0.51191 * 22 21 20 24 24 C 1.38359 * 120.29367 * 359.74186 * 23 22 21 25 25 C 1.37955 * 120.14985 * 359.97438 * 24 23 22 26 26 N 1.36404 * 108.35530 * 359.75807 * 19 18 17 27 27 H 0.96993 * 125.72480 * 180.24503 * 26 19 18 28 28 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 29 29 H 1.09002 * 110.85092 * 153.69981 * 28 11 10 30 30 O 1.42895 * 110.69130 * 277.05126 * 28 11 10 31 31 C 1.47018 * 125.64899 * 359.97438 * 9 7 2 32 32 H 0.97004 * 119.99606 * 0.02562 * 1 2 3 33 33 H 1.08999 * 110.36956 * 322.94042 * 10 9 7 34 34 H 1.09003 * 110.36599 * 85.25946 * 10 9 7 35 35 H 0.96998 * 119.99743 * 93.55096 * 13 11 10 36 36 H 1.07996 * 126.27529 * 359.97438 * 17 16 14 37 37 H 1.08004 * 126.17017 * 180.02562 * 18 17 16 38 38 H 1.08004 * 120.07761 * 0.02562 * 21 20 19 39 39 H 1.07995 * 119.92896 * 180.25250 * 22 21 20 40 40 H 1.08001 * 119.84850 * 179.71920 * 23 22 21 41 41 H 1.08008 * 119.92266 * 180.02562 * 24 23 22 42 42 H 1.08000 * 120.07167 * 179.97438 * 25 24 23 43 43 H 0.96706 * 113.99347 * 174.82523 * 30 28 11 44 44 H 1.09002 * 109.88241 * 298.39024 * 31 9 7 45 45 H 1.09000 * 109.88049 * 59.40154 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7002 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 1.9333 -3.7312 0.0016 11 6 0.8518 -4.6564 -0.6102 12 1 0.8571 -4.5970 -1.6986 13 7 1.0289 -6.0396 -0.1611 14 6 1.8614 -6.8633 -0.8280 15 8 2.4665 -6.4579 -1.8031 16 6 2.0390 -8.2471 -0.3782 17 6 2.8562 -9.1926 -0.9648 18 6 2.7310 -10.3683 -0.2271 19 6 1.8420 -10.1260 0.7978 20 6 1.4167 -11.1022 1.8230 21 6 0.5102 -10.7263 2.8156 22 6 0.1137 -11.6436 3.7666 23 6 0.6206 -12.9309 3.7441 24 6 1.5234 -13.3085 2.7661 25 6 1.9238 -12.4027 1.8058 26 7 1.4253 -8.8303 0.7077 27 1 0.7996 -8.3937 1.3065 28 6 -0.4522 -4.0433 -0.0281 29 1 -1.3017 -4.2483 -0.6795 30 8 -0.6952 -4.5339 1.2918 31 6 -0.1376 -2.5327 0.0005 32 1 -0.4850 0.8401 -0.0004 33 1 2.8331 -3.7409 -0.6135 34 1 2.1658 -4.0415 1.0203 35 1 0.5468 -6.3625 0.6162 36 1 3.4783 -9.0477 -1.8356 37 1 3.2396 -11.3008 -0.4227 38 1 0.1170 -9.7206 2.8367 39 1 -0.5907 -11.3552 4.5328 40 1 0.3103 -13.6440 4.4936 41 1 1.9150 -14.3151 2.7540 42 1 2.6289 -12.6986 1.0431 43 1 -1.4528 -4.1232 1.7307 44 1 -0.5545 -2.0842 0.9023 45 1 -0.5578 -2.0500 -0.8818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084114947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:28 Heat of formation + Delta-G solvation = 15.277929 kcal Electronic energy + Delta-G solvation = -28454.346321 eV Core-core repulsion = 24438.096477 eV Total energy + Delta-G solvation = -4016.249844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.49293 -39.53514 -38.92239 -37.75695 -34.90356 -34.09659 -32.38689 -31.90066 -31.59197 -30.82400 -28.94328 -28.11543 -26.92087 -24.66261 -23.63892 -23.06744 -21.75409 -20.76557 -20.59384 -19.96209 -19.87463 -18.86693 -17.39996 -16.97934 -16.78701 -16.01177 -15.39289 -15.17275 -15.13779 -14.87966 -14.65474 -14.23221 -14.14538 -13.92398 -13.85888 -13.67467 -13.20124 -13.01144 -12.95811 -12.76027 -12.66789 -12.49902 -12.26878 -11.66895 -11.38444 -11.34538 -11.00340 -10.85631 -10.57547 -10.48027 -10.18019 -9.92289 -9.84540 -9.78646 -9.41263 -9.35372 -9.21066 -8.82114 -8.68324 -7.85410 -6.91065 -5.77936 -3.10868 0.49078 1.01294 1.63664 2.59765 2.77247 3.23195 3.38918 3.43997 3.45819 3.46129 3.55548 4.28399 4.43847 4.45364 4.49271 4.56306 4.73599 4.90200 5.01584 5.08822 5.13999 5.21416 5.24181 5.33570 5.48547 5.50659 5.61773 5.65482 5.80246 5.80622 5.91252 5.99971 6.06975 6.12040 6.13143 6.16173 6.49791 6.55001 6.57482 6.64864 6.72047 6.88295 7.11598 7.27089 7.39603 7.67473 7.72360 7.98400 8.16285 8.33132 9.14966 9.74931 10.38952 11.34496 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020243 B = 0.002179 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.849239 B =12844.366450 C =13588.215677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.010 4.010 3 Si 0.916 3.084 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.131 3.869 11 C 0.141 3.859 12 H 0.105 0.895 13 N -0.708 5.708 14 C 0.582 3.418 15 O -0.527 6.527 16 C -0.031 4.031 17 C -0.109 4.109 18 C -0.183 4.183 19 C 0.075 3.925 20 C -0.016 4.016 21 C -0.121 4.121 22 C -0.112 4.112 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.100 4.100 26 N -0.530 5.530 27 H 0.416 0.584 28 C 0.067 3.933 29 H 0.063 0.937 30 O -0.571 6.571 31 C 0.154 3.846 32 H 0.253 0.747 33 H 0.047 0.953 34 H 0.025 0.975 35 H 0.400 0.600 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.381 0.619 44 H 0.053 0.947 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 -26.413 5.906 27.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.035 3.965 12 H 0.123 0.877 13 N -0.359 5.359 14 C 0.368 3.632 15 O -0.403 6.403 16 C -0.145 4.145 17 C -0.135 4.135 18 C -0.207 4.207 19 C -0.041 4.041 20 C -0.017 4.017 21 C -0.140 4.140 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.132 4.132 25 C -0.119 4.119 26 N -0.126 5.126 27 H 0.255 0.745 28 C 0.008 3.992 29 H 0.081 0.919 30 O -0.378 6.378 31 C 0.028 3.972 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.234 0.766 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.148 0.852 43 H 0.229 0.771 44 H 0.071 0.929 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.454 -26.072 5.127 26.611 hybrid contribution -0.693 1.408 0.889 1.804 sum -2.146 -24.664 6.016 25.478 Atomic orbital electron populations 1.69907 1.04922 1.25161 1.57564 1.24800 0.95807 0.97762 1.02209 0.86053 0.78572 0.83127 0.77644 1.21495 1.21678 1.20640 1.19103 0.90592 0.82112 1.43388 0.90203 1.44280 1.01190 0.99920 1.87328 1.21836 0.94675 0.85676 0.97403 1.22435 0.95502 0.79072 0.99462 0.87708 1.45674 1.45713 1.12262 1.32221 1.17080 0.79757 0.83077 0.83275 1.90865 1.47180 1.75606 1.26658 1.20623 1.05092 0.94781 0.94044 1.21221 0.99912 0.91457 1.00930 1.21073 1.02928 0.99560 0.97164 1.19092 1.01733 0.84102 0.99207 1.18102 0.97391 0.92603 0.93611 1.21146 0.97973 0.99692 0.95161 1.21061 0.99829 0.93526 0.98547 1.21254 0.97573 0.96401 0.98850 1.21104 0.97680 0.99586 0.94806 1.21126 0.99773 0.91899 0.99130 1.42062 1.36422 1.10019 1.24050 0.74545 1.23573 0.95433 0.97070 0.83172 0.91922 1.86203 1.54685 1.67201 1.29668 1.21873 0.85649 0.87568 1.02077 0.93707 0.93462 0.95732 0.76588 0.83056 0.83628 0.86431 0.85697 0.85905 0.85580 0.85216 0.77076 0.92889 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.71 10.31 55.49 0.57 -26.14 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.31 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 9 N -0.60 -15.43 3.39 -170.07 -0.58 -16.01 16 10 C 0.13 2.91 6.92 -2.53 -0.02 2.89 16 11 C 0.14 2.61 3.20 -65.64 -0.21 2.40 16 12 H 0.11 2.06 7.73 -51.93 -0.40 1.66 16 13 N -0.71 -10.95 5.18 -52.93 -0.27 -11.23 16 14 C 0.58 9.49 7.78 -12.90 -0.10 9.39 16 15 O -0.53 -10.48 16.62 5.18 0.09 -10.39 16 16 C -0.03 -0.42 7.04 -81.94 -0.58 -1.00 16 17 C -0.11 -1.37 10.60 -39.23 -0.42 -1.79 16 18 C -0.18 -1.91 10.22 -39.31 -0.40 -2.31 16 19 C 0.07 0.78 6.93 -82.07 -0.57 0.21 16 20 C -0.02 -0.15 5.87 -104.97 -0.62 -0.76 16 21 C -0.12 -0.99 9.70 -39.18 -0.38 -1.37 16 22 C -0.11 -0.79 10.03 -39.64 -0.40 -1.19 16 23 C -0.12 -0.80 10.04 -39.49 -0.40 -1.19 16 24 C -0.11 -0.74 10.03 -39.64 -0.40 -1.14 16 25 C -0.10 -0.77 9.56 -39.18 -0.37 -1.14 16 26 N -0.53 -5.66 5.90 -5.81 -0.03 -5.69 16 27 H 0.42 3.58 7.24 -40.82 -0.30 3.29 16 28 C 0.07 1.18 4.22 -24.76 -0.10 1.08 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 O -0.57 -8.70 12.15 -35.23 -0.43 -9.13 16 31 C 0.15 3.56 5.13 -3.07 -0.02 3.54 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.40 5.30 6.67 -40.82 -0.27 5.03 16 36 H 0.15 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.15 1.14 7.26 -52.48 -0.38 0.76 16 38 H 0.12 0.81 7.14 -52.48 -0.37 0.43 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.13 0.78 6.98 -52.49 -0.37 0.42 16 43 H 0.38 4.53 9.09 45.56 0.41 4.94 16 44 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 45 H 0.06 1.45 7.37 -51.93 -0.38 1.07 16 LS Contribution 377.17 15.07 5.68 5.68 Total: -1.00 -34.00 377.17 -10.17 -44.17 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.95 Total: 10.77 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -5.22 Total: 0.78 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.31 Total: -59.07 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.34 Total: -19.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.00 -10.17 -44.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084114947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.451 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds