Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00365 * 2 1 4 4 H 1.48499 * 109.47349 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47030 * 300.00069 * 3 2 1 6 6 H 1.48494 * 109.47244 * 60.00210 * 3 2 1 7 7 C 1.38816 * 119.99479 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99777 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00508 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00426 * 180.02562 * 9 7 2 11 11 H 1.08999 * 112.84479 * 336.19304 * 10 9 7 12 12 C 1.53778 * 113.69432 * 107.46185 * 10 9 7 13 13 C 1.53788 * 87.07943 * 139.99162 * 12 10 9 14 14 H 1.08999 * 113.68610 * 89.13431 * 13 12 10 15 15 C 1.52997 * 113.61311 * 220.01748 * 13 12 10 16 16 N 1.46498 * 109.47315 * 272.50131 * 15 13 12 17 17 C 1.34783 * 119.99761 * 180.02562 * 16 15 13 18 18 O 1.21542 * 120.00177 * 359.97438 * 17 16 15 19 19 C 1.47922 * 119.99688 * 179.97438 * 17 16 15 20 20 C 1.38260 * 119.24117 * 180.25231 * 19 17 16 21 21 C 1.40703 * 118.65159 * 180.24501 * 20 19 17 22 22 C 1.40235 * 122.05550 * 179.79219 * 21 20 19 23 23 C 1.36306 * 119.48090 * 179.72744 * 22 21 20 24 24 C 1.39251 * 120.94364 * 359.97438 * 23 22 21 25 25 C 1.36362 * 121.05792 * 359.97438 * 24 23 22 26 26 C 1.40042 * 119.59029 * 0.03944 * 25 24 23 27 27 C 1.41354 * 121.85291 * 180.02562 * 26 25 24 28 28 O 1.35494 * 119.95314 * 359.97393 * 27 26 25 29 29 N 1.31378 * 120.09538 * 179.97438 * 27 26 25 30 30 C 1.53778 * 87.08110 * 334.56662 * 13 12 10 31 31 H 0.97006 * 119.99629 * 0.02562 * 1 2 3 32 32 H 0.97008 * 119.99833 * 0.02562 * 9 7 2 33 33 H 1.09007 * 113.61236 * 25.44881 * 12 10 9 34 34 H 1.08994 * 113.61695 * 254.54093 * 12 10 9 35 35 H 1.09002 * 109.47148 * 152.50021 * 15 13 12 36 36 H 1.09005 * 109.47134 * 32.50191 * 15 13 12 37 37 H 0.96989 * 120.00251 * 359.97438 * 16 15 13 38 38 H 1.07998 * 120.67882 * 0.02562 * 20 19 17 39 39 H 1.08001 * 120.25561 * 359.74293 * 22 21 20 40 40 H 1.08003 * 119.53204 * 179.97438 * 23 22 21 41 41 H 1.07999 * 119.47283 * 179.97438 * 24 23 22 42 42 H 1.08002 * 120.20197 * 179.97438 * 25 24 23 43 43 H 0.96699 * 113.99651 * 90.00154 * 28 27 26 44 44 H 1.09005 * 113.60885 * 139.97476 * 30 13 12 45 45 H 1.08997 * 113.61802 * 270.79523 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 1 3.0653 -3.5639 -0.4060 12 6 2.0008 -4.4033 1.3427 13 6 1.8494 -5.6982 0.5270 14 1 2.7992 -6.1645 0.2654 15 6 0.8475 -6.6868 1.1269 16 7 1.5303 -7.5451 2.0981 17 6 0.8413 -8.4985 2.7563 18 8 -0.3464 -8.6457 2.5444 19 6 1.5308 -9.3656 3.7365 20 6 0.8101 -10.3420 4.3990 21 6 1.4772 -11.1563 5.3325 22 6 0.8153 -12.1648 6.0475 23 6 1.5144 -12.9268 6.9356 24 6 2.8756 -12.7182 7.1420 25 6 3.5495 -11.7468 6.4625 26 6 2.8638 -10.9442 5.5422 27 6 3.5148 -9.9242 4.8116 28 8 4.8389 -9.7015 4.9935 29 7 2.8379 -9.1918 3.9563 30 6 1.2598 -4.8288 -0.5961 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 -0.0005 33 1 1.1230 -4.1590 1.9411 34 1 2.9295 -4.3513 1.9109 35 1 0.4241 -7.3019 0.3328 36 1 0.0491 -6.1373 1.6257 37 1 2.4781 -7.4279 2.2669 38 1 -0.2442 -10.4746 4.2064 39 1 -0.2401 -12.3366 5.8955 40 1 1.0053 -13.7035 7.4870 41 1 3.4062 -13.3356 7.8517 42 1 4.6052 -11.5967 6.6337 43 1 5.4086 -10.2149 4.4045 44 1 1.5904 -5.1202 -1.5930 45 1 0.1793 -4.7020 -0.5286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086107496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 10.431491 kcal Electronic energy + Delta-G solvation = -27612.392910 eV Core-core repulsion = 23595.932909 eV Total energy + Delta-G solvation = -4016.460001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55479 -39.76381 -38.48230 -38.37635 -36.93845 -34.73320 -33.28896 -32.75464 -31.76708 -30.35706 -29.92275 -27.51633 -25.05548 -24.86975 -24.50583 -23.69546 -22.64255 -21.34450 -20.95345 -19.42375 -18.93072 -18.43399 -18.02909 -17.07550 -16.97818 -16.34311 -15.93006 -15.83339 -15.32859 -14.98450 -14.76899 -14.62385 -14.48929 -14.03841 -13.95585 -13.60118 -13.42735 -13.30335 -12.91232 -12.48317 -12.36160 -12.22159 -11.86347 -11.76926 -11.75217 -11.36083 -11.21223 -10.83663 -10.68742 -10.56547 -10.43650 -10.16059 -10.06141 -9.78854 -9.77450 -9.68302 -9.45475 -9.02420 -8.84381 -8.50158 -6.93185 -5.75846 -3.04363 -0.30259 0.17382 1.28930 2.03747 2.87953 2.97505 3.11151 3.44420 3.49979 3.52320 3.57885 3.99828 4.06103 4.23203 4.33631 4.50844 4.60785 4.64429 4.75848 4.91099 5.01756 5.03704 5.17345 5.22894 5.28088 5.39404 5.41944 5.49759 5.56243 5.79309 5.84187 5.85170 5.87868 5.92110 5.97341 6.12549 6.22144 6.29013 6.35046 6.40738 6.48153 6.65308 6.87242 6.94540 7.15660 7.22272 7.55108 7.72338 8.10672 8.42833 9.53901 10.12606 10.46848 11.46660 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.001794 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.292975 B =15607.137571 C =16187.762515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.161 4.161 13 C -0.127 4.127 14 H 0.089 0.911 15 C 0.130 3.870 16 N -0.702 5.702 17 C 0.567 3.433 18 O -0.536 6.536 19 C 0.082 3.918 20 C -0.093 4.093 21 C -0.023 4.023 22 C -0.103 4.103 23 C -0.097 4.097 24 C -0.114 4.114 25 C -0.083 4.083 26 C -0.108 4.108 27 C 0.355 3.645 28 O -0.471 6.471 29 N -0.484 5.484 30 C -0.141 4.141 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.411 0.589 38 H 0.157 0.843 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.405 0.595 44 H 0.061 0.939 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 -31.933 12.964 35.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.202 4.202 13 C -0.146 4.146 14 H 0.107 0.893 15 C 0.007 3.993 16 N -0.352 5.352 17 C 0.352 3.648 18 O -0.414 6.414 19 C -0.044 4.044 20 C -0.114 4.114 21 C -0.028 4.028 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.103 4.103 26 C -0.112 4.112 27 C 0.160 3.840 28 O -0.279 6.279 29 N -0.205 5.205 30 C -0.181 4.181 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.247 0.753 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.264 0.736 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.614 -30.736 12.664 33.894 hybrid contribution 0.470 0.083 0.343 0.588 sum 7.085 -30.654 13.007 34.044 Atomic orbital electron populations 1.69675 1.05128 1.25580 1.57645 1.24773 0.95533 0.97789 1.02945 0.86115 0.78790 0.84114 0.77160 1.20537 1.21875 1.21888 1.19361 0.91116 0.84254 1.42639 0.91031 1.42418 1.05770 0.99896 1.86982 1.21522 0.95307 0.85015 0.92802 0.90658 1.23947 1.01458 0.94858 0.99922 1.22641 0.98408 0.94384 0.99212 0.89282 1.21537 0.95422 0.91582 0.90786 1.45911 1.14037 1.33815 1.41431 1.17774 0.86127 0.80452 0.80492 1.90804 1.14415 1.70555 1.65593 1.20611 0.88451 0.96934 0.98405 1.22230 1.01822 0.93586 0.93749 1.18070 0.92179 0.96217 0.96286 1.21068 1.00514 0.94435 0.96091 1.21075 0.94433 0.98888 0.97179 1.21046 0.94646 0.97967 0.99506 1.20975 1.00580 0.94190 0.94512 1.19057 0.94263 0.97477 1.00384 1.19096 0.85575 0.88916 0.90437 1.84751 1.11943 1.69773 1.61412 1.66829 1.08900 1.26904 1.17908 1.23445 1.01021 0.96989 0.96665 0.93535 0.78073 0.90354 0.92689 0.91463 0.90923 0.75272 0.82496 0.84361 0.85070 0.85147 0.84348 0.73642 0.91991 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.81 9.97 -15.06 -0.15 -6.96 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.53 16 9 N -0.71 -18.08 5.40 -52.64 -0.28 -18.36 16 10 C 0.17 3.28 4.48 -67.12 -0.30 2.98 16 11 H 0.08 1.48 8.10 -51.93 -0.42 1.05 16 12 C -0.16 -2.78 7.43 -25.92 -0.19 -2.98 16 13 C -0.13 -1.79 3.75 -89.81 -0.34 -2.13 16 14 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 15 C 0.13 1.81 5.51 -4.04 -0.02 1.78 16 16 N -0.70 -9.28 5.54 -61.22 -0.34 -9.62 16 17 C 0.57 8.05 7.80 -12.29 -0.10 7.96 16 18 O -0.54 -8.96 16.27 5.33 0.09 -8.88 16 19 C 0.08 1.00 6.73 -83.09 -0.56 0.44 16 20 C -0.09 -0.96 9.41 -38.64 -0.36 -1.32 16 21 C -0.02 -0.20 5.74 -106.84 -0.61 -0.81 16 22 C -0.10 -0.65 9.81 -39.53 -0.39 -1.04 16 23 C -0.10 -0.47 9.95 -39.90 -0.40 -0.87 16 24 C -0.11 -0.55 9.95 -39.88 -0.40 -0.94 16 25 C -0.08 -0.50 9.58 -39.58 -0.38 -0.88 16 26 C -0.11 -0.92 5.76 -106.66 -0.61 -1.54 16 27 C 0.35 3.40 7.80 -16.56 -0.13 3.27 16 28 O -0.47 -3.45 12.83 -18.17 -0.23 -3.69 16 29 N -0.48 -5.61 9.47 -9.60 -0.09 -5.70 16 30 C -0.14 -2.30 7.39 -25.92 -0.19 -2.49 16 31 H 0.25 7.52 8.31 -40.82 -0.34 7.19 16 32 H 0.39 10.39 7.93 -40.82 -0.32 10.06 16 33 H 0.08 1.49 7.90 -51.92 -0.41 1.08 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.13 7.84 -51.93 -0.41 0.72 16 37 H 0.41 4.98 7.77 -40.82 -0.32 4.67 16 38 H 0.16 1.48 7.59 -52.49 -0.40 1.08 16 39 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.13 0.31 8.06 -52.48 -0.42 -0.11 16 41 H 0.13 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.14 0.58 7.65 -52.49 -0.40 0.18 16 43 H 0.40 0.87 9.06 45.56 0.41 1.29 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.37 8.08 -51.93 -0.42 0.96 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -35.13 384.80 -9.78 -44.91 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.19 Total: 11.78 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -5.23 Total: -6.05 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.01 Total: -61.47 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.15 Total: -12.57 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.13 -9.78 -44.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086107496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.342 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds