Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85084 * 23.79834 * 10 9 7 12 12 C 1.53776 * 113.62100 * 154.99786 * 10 9 7 13 13 C 1.53773 * 87.08681 * 139.98000 * 12 10 9 14 14 H 1.09002 * 113.61621 * 89.19873 * 13 12 10 15 15 C 1.52993 * 113.61935 * 220.02087 * 13 12 10 16 16 N 1.46501 * 109.47735 * 184.99535 * 15 13 12 17 17 C 1.34772 * 120.00366 * 180.02562 * 16 15 13 18 18 O 1.21636 * 119.99882 * 359.97438 * 17 16 15 19 19 C 1.47138 * 119.99925 * 180.02562 * 17 16 15 20 20 C 1.37941 * 120.55229 * 359.72089 * 19 17 16 21 21 N 1.33959 * 122.20187 * 179.67411 * 20 19 17 22 22 H 0.97004 * 118.59897 * 180.30294 * 21 20 19 23 23 C 1.37800 * 122.80623 * 0.64383 * 21 20 19 24 24 C 1.39273 * 120.53037 * 179.68587 * 23 21 20 25 25 C 1.37736 * 119.97604 * 180.02562 * 24 23 21 26 26 C 1.38786 * 120.72032 * 359.95251 * 25 24 23 27 27 C 1.37715 * 120.29689 * 0.02562 * 26 25 24 28 28 C 1.39489 * 119.60312 * 359.97438 * 27 26 25 29 29 C 1.47142 * 120.55179 * 179.97438 * 19 17 16 30 30 O 1.21860 * 121.41234 * 359.97438 * 29 19 17 31 31 C 1.53785 * 87.08204 * 334.56955 * 13 12 10 32 32 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 33 33 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 34 34 H 1.08998 * 113.61884 * 254.53041 * 12 10 9 35 35 H 1.09007 * 113.61103 * 25.42554 * 12 10 9 36 36 H 1.09005 * 109.47432 * 305.00111 * 15 13 12 37 37 H 1.09006 * 109.46807 * 64.99722 * 15 13 12 38 38 H 0.96998 * 119.99515 * 0.02562 * 16 15 13 39 39 H 1.07994 * 118.89914 * 0.02562 * 20 19 17 40 40 H 1.08009 * 120.01207 * 359.97388 * 24 23 21 41 41 H 1.07993 * 119.63922 * 179.97438 * 25 24 23 42 42 H 1.08006 * 119.84809 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.19844 * 179.97438 * 27 26 25 44 44 H 1.09004 * 113.61417 * 270.88633 * 31 13 12 45 45 H 1.09000 * 113.61689 * 139.97406 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5281 -3.2968 -0.4047 12 6 5.5264 -2.3656 -0.5938 13 6 5.9845 -3.3092 0.5306 14 1 5.9141 -4.3654 0.2702 15 6 7.3411 -2.9345 1.1306 16 7 7.7432 -3.9535 2.1033 17 6 8.9123 -3.8316 2.7626 18 8 9.6339 -2.8758 2.5497 19 6 9.3164 -4.8554 3.7391 20 6 8.5048 -5.9415 3.9928 21 7 8.8429 -6.8959 4.8699 22 1 8.2346 -7.6394 5.0046 23 6 10.0148 -6.8632 5.5941 24 6 10.3160 -7.8783 6.4989 25 6 11.4904 -7.8338 7.2171 26 6 12.3843 -6.7853 7.0503 27 6 12.1072 -5.7710 6.1609 28 6 10.9216 -5.8031 5.4267 29 6 10.5905 -4.7348 4.4654 30 8 11.3404 -3.7923 4.2800 31 6 4.7868 -2.7926 1.3451 32 1 -0.4850 0.8401 0.0004 33 1 3.8646 -0.3620 0.0007 34 1 5.6143 -2.7988 -1.5902 35 1 5.9551 -1.3657 -0.5266 36 1 8.0858 -2.8759 0.3368 37 1 7.2636 -1.9677 1.6282 38 1 7.1680 -4.7159 2.2728 39 1 7.5681 -6.0282 3.4625 40 1 9.6285 -8.6996 6.6378 41 1 11.7183 -8.6236 7.9175 42 1 13.3013 -6.7648 7.6206 43 1 12.8037 -4.9556 6.0327 44 1 5.0133 -1.9094 1.9425 45 1 4.2774 -3.5705 1.9140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086136255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 9.971480 kcal Electronic energy + Delta-G solvation = -27782.262834 eV Core-core repulsion = 23765.782885 eV Total energy + Delta-G solvation = -4016.479949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53657 -39.69041 -38.63844 -38.07392 -37.61832 -34.67907 -33.40375 -32.46176 -31.43622 -30.72860 -30.39782 -27.52858 -25.21141 -24.70987 -24.55349 -23.52285 -22.81125 -21.24019 -20.97645 -19.53271 -18.99637 -18.69577 -18.27800 -17.41808 -16.69615 -16.20816 -15.86476 -15.73179 -15.23683 -15.13117 -14.86654 -14.81156 -14.49493 -14.42804 -14.12899 -13.81225 -13.65193 -13.20220 -13.16656 -12.67973 -12.60363 -12.49911 -12.18836 -11.97923 -11.87101 -11.61705 -11.54527 -10.89739 -10.49348 -10.36172 -10.14898 -10.11533 -9.85454 -9.84185 -9.59991 -9.59671 -9.46816 -9.02064 -8.89557 -8.26851 -7.27708 -5.79541 -3.14944 0.19501 0.30026 1.13552 2.17759 2.36739 3.03818 3.11939 3.38175 3.41813 3.46097 3.63479 3.66256 4.01224 4.18402 4.28968 4.41234 4.57724 4.57952 4.71244 4.83245 4.88883 4.96025 5.09982 5.13214 5.25529 5.34959 5.38953 5.40459 5.42660 5.67656 5.74873 5.78678 5.80845 5.90223 5.96897 5.99160 6.17948 6.20585 6.23914 6.32068 6.37725 6.42569 6.49867 6.68596 6.97658 7.49620 7.62298 7.96674 8.31415 8.40362 9.18376 9.91358 10.11164 11.38589 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.001851 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.531536 B =15124.439821 C =15522.602684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.171 3.829 11 H 0.083 0.917 12 C -0.146 4.146 13 C -0.126 4.126 14 H 0.090 0.910 15 C 0.134 3.866 16 N -0.731 5.731 17 C 0.572 3.428 18 O -0.517 6.517 19 C -0.324 4.324 20 C 0.211 3.789 21 N -0.596 5.596 22 H 0.423 0.577 23 C 0.179 3.821 24 C -0.167 4.167 25 C -0.061 4.061 26 C -0.152 4.152 27 C -0.032 4.032 28 C -0.181 4.181 29 C 0.431 3.569 30 O -0.447 6.447 31 C -0.161 4.161 32 H 0.260 0.740 33 H 0.363 0.637 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.391 0.609 39 H 0.169 0.831 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.078 0.922 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.532 -23.547 14.218 35.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.101 0.899 12 C -0.185 4.185 13 C -0.146 4.146 14 H 0.108 0.892 15 C 0.011 3.989 16 N -0.384 5.384 17 C 0.359 3.641 18 O -0.393 6.393 19 C -0.336 4.336 20 C 0.077 3.923 21 N -0.204 5.204 22 H 0.259 0.741 23 C 0.078 3.922 24 C -0.188 4.188 25 C -0.080 4.080 26 C -0.171 4.171 27 C -0.051 4.051 28 C -0.185 4.185 29 C 0.311 3.689 30 O -0.323 6.323 31 C -0.201 4.201 32 H 0.070 0.930 33 H 0.196 0.804 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.225 0.775 39 H 0.186 0.814 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.096 0.904 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.232 -22.306 13.930 35.090 hybrid contribution -0.221 0.346 0.221 0.466 sum 23.011 -21.960 14.152 34.814 Atomic orbital electron populations 1.69705 1.05128 1.25891 1.57335 1.24694 0.95266 0.97298 1.01859 0.86558 0.79262 0.84902 0.77875 1.21025 1.20225 1.21695 1.19128 0.80721 0.94728 1.43250 0.89172 1.42767 1.04072 1.02068 1.88779 1.21510 0.89546 0.90023 0.92925 0.89869 1.23467 0.98855 0.99082 0.97120 1.22636 0.93177 0.99771 0.98974 0.89189 1.21403 0.95447 0.91194 0.90826 1.45929 1.21342 1.27369 1.43751 1.17381 0.81154 0.85268 0.80277 1.90866 1.52195 1.31615 1.64579 1.21975 1.01185 1.00272 1.10166 1.22034 0.97172 0.86366 0.86725 1.40827 1.19279 1.23805 1.36453 0.74053 1.17897 0.86095 0.95311 0.92883 1.20727 0.99933 0.98960 0.99175 1.21137 0.92463 0.97577 0.96812 1.21200 1.00770 0.94879 1.00250 1.21198 0.94316 0.97723 0.91828 1.20320 0.97113 0.97410 1.03676 1.19351 0.84929 0.84423 0.80201 1.90764 1.49823 1.31044 1.60708 1.23921 0.95925 1.00540 0.99760 0.93038 0.80410 0.91642 0.90273 0.91645 0.91259 0.77462 0.81434 0.84730 0.84861 0.84914 0.84059 0.90374 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 6 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 7 C -0.25 -6.91 10.45 -15.06 -0.16 -7.07 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.74 -17.14 5.21 -52.64 -0.27 -17.41 16 10 C 0.17 3.09 4.48 -67.12 -0.30 2.79 16 11 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 12 C -0.15 -2.13 7.39 -25.93 -0.19 -2.32 16 13 C -0.13 -1.52 3.75 -89.81 -0.34 -1.86 16 14 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 16 N -0.73 -7.93 5.51 -61.47 -0.34 -8.27 16 17 C 0.57 8.08 7.76 -12.65 -0.10 7.98 16 18 O -0.52 -10.08 15.55 -14.88 -0.23 -10.31 16 19 C -0.32 -3.61 6.04 -102.78 -0.62 -4.23 16 20 C 0.21 1.14 10.65 -16.73 -0.18 0.96 16 21 N -0.60 -2.17 5.21 -10.42 -0.05 -2.22 16 22 H 0.42 -0.17 8.73 -40.82 -0.36 -0.53 16 23 C 0.18 1.11 6.66 -83.94 -0.56 0.55 16 24 C -0.17 -0.66 9.86 -39.38 -0.39 -1.05 16 25 C -0.06 -0.24 10.01 -39.56 -0.40 -0.64 16 26 C -0.15 -0.82 10.03 -39.57 -0.40 -1.22 16 27 C -0.03 -0.27 9.65 -39.31 -0.38 -0.65 16 28 C -0.18 -1.75 5.89 -104.81 -0.62 -2.36 16 29 C 0.43 5.79 7.15 -32.20 -0.23 5.56 16 30 O -0.45 -7.94 15.85 -15.08 -0.24 -8.18 16 31 C -0.16 -2.42 7.43 -25.91 -0.19 -2.61 16 32 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 33 H 0.36 8.40 5.78 -40.82 -0.24 8.16 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.02 7.84 -51.93 -0.41 0.61 16 38 H 0.39 2.73 6.48 -40.82 -0.26 2.46 16 39 H 0.17 0.25 6.31 -52.49 -0.33 -0.08 16 40 H 0.13 0.12 8.06 -52.48 -0.42 -0.30 16 41 H 0.13 0.18 8.06 -52.49 -0.42 -0.24 16 42 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 43 H 0.14 1.20 7.79 -52.49 -0.41 0.79 16 44 H 0.08 1.30 7.90 -51.93 -0.41 0.89 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 378.10 15.07 5.70 5.70 Total: -1.00 -40.52 378.10 -10.35 -50.86 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.80 Total: 5.14 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -5.16 Total: -4.44 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.11 Total: -56.27 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.47 Total: -18.49 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.52 -10.35 -50.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086136255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.836 kcal (2) G-P(sol) polarization free energy of solvation -40.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds