Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85084 * 23.79834 * 10 9 7 12 12 C 1.53776 * 113.62100 * 154.99786 * 10 9 7 13 13 C 1.53773 * 87.08681 * 139.98000 * 12 10 9 14 14 H 1.09002 * 113.61621 * 89.19873 * 13 12 10 15 15 C 1.52993 * 113.61935 * 220.02087 * 13 12 10 16 16 N 1.46501 * 109.47735 * 184.99535 * 15 13 12 17 17 C 1.34772 * 120.00366 * 180.02562 * 16 15 13 18 18 O 1.21636 * 119.99882 * 359.97438 * 17 16 15 19 19 C 1.47138 * 119.99925 * 180.02562 * 17 16 15 20 20 C 1.37941 * 120.55229 * 359.72089 * 19 17 16 21 21 N 1.33959 * 122.20187 * 179.67411 * 20 19 17 22 22 H 0.97004 * 118.59897 * 180.30294 * 21 20 19 23 23 C 1.37800 * 122.80623 * 0.64383 * 21 20 19 24 24 C 1.39273 * 120.53037 * 179.68587 * 23 21 20 25 25 C 1.37736 * 119.97604 * 180.02562 * 24 23 21 26 26 C 1.38786 * 120.72032 * 359.95251 * 25 24 23 27 27 C 1.37715 * 120.29689 * 0.02562 * 26 25 24 28 28 C 1.39489 * 119.60312 * 359.97438 * 27 26 25 29 29 C 1.47142 * 120.55179 * 179.97438 * 19 17 16 30 30 O 1.21860 * 121.41234 * 359.97438 * 29 19 17 31 31 C 1.53785 * 87.08204 * 334.56955 * 13 12 10 32 32 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 33 33 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 34 34 H 1.08998 * 113.61884 * 254.53041 * 12 10 9 35 35 H 1.09007 * 113.61103 * 25.42554 * 12 10 9 36 36 H 1.09005 * 109.47432 * 305.00111 * 15 13 12 37 37 H 1.09006 * 109.46807 * 64.99722 * 15 13 12 38 38 H 0.96998 * 119.99515 * 0.02562 * 16 15 13 39 39 H 1.07994 * 118.89914 * 0.02562 * 20 19 17 40 40 H 1.08009 * 120.01207 * 359.97388 * 24 23 21 41 41 H 1.07993 * 119.63922 * 179.97438 * 25 24 23 42 42 H 1.08006 * 119.84809 * 180.02562 * 26 25 24 43 43 H 1.08001 * 120.19844 * 179.97438 * 27 26 25 44 44 H 1.09004 * 113.61417 * 270.88633 * 31 13 12 45 45 H 1.09000 * 113.61689 * 139.97406 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5281 -3.2968 -0.4047 12 6 5.5264 -2.3656 -0.5938 13 6 5.9845 -3.3092 0.5306 14 1 5.9141 -4.3654 0.2702 15 6 7.3411 -2.9345 1.1306 16 7 7.7432 -3.9535 2.1033 17 6 8.9123 -3.8316 2.7626 18 8 9.6339 -2.8758 2.5497 19 6 9.3164 -4.8554 3.7391 20 6 8.5048 -5.9415 3.9928 21 7 8.8429 -6.8959 4.8699 22 1 8.2346 -7.6394 5.0046 23 6 10.0148 -6.8632 5.5941 24 6 10.3160 -7.8783 6.4989 25 6 11.4904 -7.8338 7.2171 26 6 12.3843 -6.7853 7.0503 27 6 12.1072 -5.7710 6.1609 28 6 10.9216 -5.8031 5.4267 29 6 10.5905 -4.7348 4.4654 30 8 11.3404 -3.7923 4.2800 31 6 4.7868 -2.7926 1.3451 32 1 -0.4850 0.8401 0.0004 33 1 3.8646 -0.3620 0.0007 34 1 5.6143 -2.7988 -1.5902 35 1 5.9551 -1.3657 -0.5266 36 1 8.0858 -2.8759 0.3368 37 1 7.2636 -1.9677 1.6282 38 1 7.1680 -4.7159 2.2728 39 1 7.5681 -6.0282 3.4625 40 1 9.6285 -8.6996 6.6378 41 1 11.7183 -8.6236 7.9175 42 1 13.3013 -6.7648 7.6206 43 1 12.8037 -4.9556 6.0327 44 1 5.0133 -1.9094 1.9425 45 1 4.2774 -3.5705 1.9140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086136255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = -20.285878 kcal Electronic energy + Delta-G solvation = -27783.574891 eV Core-core repulsion = 23765.782885 eV Total energy + Delta-G solvation = -4017.792006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13358 -40.69896 -39.78456 -38.95310 -38.20582 -36.06817 -35.03381 -33.25291 -32.66581 -31.88636 -31.01886 -28.70458 -26.43657 -25.82935 -25.14811 -24.88450 -23.37668 -22.46622 -22.03117 -20.85354 -19.70122 -19.42411 -19.24991 -18.86398 -17.54148 -16.97789 -16.87137 -16.58929 -16.47968 -16.12069 -15.86447 -15.69750 -15.58619 -15.34381 -14.95317 -14.82041 -14.65253 -14.48005 -14.32387 -14.02006 -13.88414 -13.22932 -13.20865 -13.07582 -13.00231 -12.91450 -12.66919 -12.29856 -12.15114 -11.90710 -11.69486 -11.55712 -11.21142 -11.06108 -10.84715 -10.45738 -10.45033 -10.09939 -10.01173 -9.24727 -8.88265 -8.02284 -5.33605 -0.35778 -0.26136 0.64504 1.38008 1.39182 1.46251 1.58152 1.75471 2.15183 2.38594 2.47814 2.92901 3.10200 3.28685 3.54194 3.61868 3.64692 3.76876 3.79486 3.87059 3.99008 4.13205 4.25724 4.29649 4.30777 4.36535 4.43803 4.54727 4.60009 4.73391 4.84891 4.87151 4.98050 4.99374 5.02060 5.08150 5.25822 5.36595 5.36833 5.47056 5.48413 5.49512 5.70755 5.79799 5.86498 6.12929 6.24290 6.67485 6.83239 7.09114 7.39324 7.88439 8.05067 9.19086 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022675 B = 0.001851 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.531536 B =15124.439821 C =15522.602684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.948 3.052 4 H -0.283 1.283 5 H -0.255 1.255 6 H -0.296 1.296 7 C -0.227 4.227 8 H 0.064 0.936 9 N -0.746 5.746 10 C 0.146 3.854 11 H 0.084 0.916 12 C -0.141 4.141 13 C -0.093 4.093 14 H 0.129 0.871 15 C 0.139 3.861 16 N -0.711 5.711 17 C 0.570 3.430 18 O -0.590 6.590 19 C -0.386 4.386 20 C 0.269 3.731 21 N -0.564 5.564 22 H 0.450 0.550 23 C 0.169 3.831 24 C -0.147 4.147 25 C -0.056 4.056 26 C -0.145 4.145 27 C -0.065 4.065 28 C -0.209 4.209 29 C 0.408 3.592 30 O -0.527 6.527 31 C -0.153 4.153 32 H 0.256 0.744 33 H 0.363 0.637 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.414 0.586 39 H 0.221 0.779 40 H 0.181 0.819 41 H 0.172 0.828 42 H 0.152 0.848 43 H 0.116 0.884 44 H 0.059 0.941 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.513 -28.543 15.796 39.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.256 4.256 3 Si 0.776 3.224 4 H -0.209 1.209 5 H -0.180 1.180 6 H -0.223 1.223 7 C -0.358 4.358 8 H 0.082 0.918 9 N -0.387 5.387 10 C 0.037 3.963 11 H 0.102 0.898 12 C -0.180 4.180 13 C -0.112 4.112 14 H 0.147 0.853 15 C 0.015 3.985 16 N -0.365 5.365 17 C 0.359 3.641 18 O -0.470 6.470 19 C -0.398 4.398 20 C 0.130 3.870 21 N -0.172 5.172 22 H 0.293 0.707 23 C 0.067 3.933 24 C -0.166 4.166 25 C -0.075 4.075 26 C -0.163 4.163 27 C -0.083 4.083 28 C -0.212 4.212 29 C 0.296 3.704 30 O -0.411 6.411 31 C -0.194 4.194 32 H 0.065 0.935 33 H 0.196 0.804 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.252 0.748 39 H 0.238 0.762 40 H 0.199 0.801 41 H 0.190 0.810 42 H 0.170 0.830 43 H 0.135 0.865 44 H 0.078 0.922 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.218 -27.465 15.552 39.182 hybrid contribution -0.217 1.555 -0.118 1.574 sum 23.000 -25.910 15.434 37.928 Atomic orbital electron populations 1.69867 1.06919 1.26459 1.60122 1.25441 0.96062 1.00936 1.03176 0.85505 0.78657 0.80343 0.77857 1.20934 1.18008 1.22332 1.19155 0.82791 0.93516 1.40382 0.91782 1.42851 1.02509 1.04143 1.89185 1.21968 0.90678 0.87971 0.95675 0.89825 1.23384 0.96088 0.99651 0.98888 1.22480 0.91156 1.01185 0.96343 0.85272 1.21207 0.95661 0.90792 0.90851 1.45629 1.20704 1.27514 1.42650 1.17867 0.80973 0.84942 0.80273 1.90820 1.54498 1.34675 1.67027 1.21531 1.02520 1.03023 1.12743 1.22498 0.96668 0.83482 0.84309 1.40973 1.18565 1.23554 1.34073 0.70666 1.18035 0.86271 0.94996 0.93951 1.21267 1.00195 0.98541 0.96647 1.21656 0.91725 0.97380 0.96705 1.21504 1.01867 0.94125 0.98799 1.21199 0.94453 0.98778 0.93914 1.20281 0.98908 0.98008 1.04017 1.20159 0.85337 0.84354 0.80587 1.90702 1.52310 1.34223 1.63832 1.23734 0.96806 1.00558 0.98278 0.93481 0.80412 0.89929 0.91212 0.92214 0.93870 0.74788 0.76231 0.80124 0.81040 0.83008 0.86545 0.92214 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.95 13.97 21.65 0.30 -62.64 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.95 46.49 27.74 68.60 1.90 48.40 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.26 -11.46 6.52 99.48 0.65 -10.82 16 6 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 7 C -0.23 -12.75 10.45 84.03 0.88 -11.87 16 8 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 9 N -0.75 -34.18 5.21 -320.45 -1.67 -35.85 16 10 C 0.15 5.00 4.48 45.52 0.20 5.21 16 11 H 0.08 2.86 8.10 -2.38 -0.02 2.84 16 12 C -0.14 -3.80 7.39 31.12 0.23 -3.57 16 13 C -0.09 -1.94 3.75 -10.27 -0.04 -1.98 16 14 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 15 C 0.14 3.37 5.51 86.38 0.48 3.84 16 16 N -0.71 -14.18 5.51 -466.65 -2.57 -16.75 16 17 C 0.57 16.67 7.76 86.58 0.67 17.34 16 18 O -0.59 -25.21 15.55 15.10 0.23 -24.98 16 19 C -0.39 -8.65 6.04 -18.67 -0.11 -8.76 16 20 C 0.27 1.82 10.65 84.30 0.90 2.72 16 21 N -0.56 -1.14 5.21 -186.89 -0.97 -2.11 16 22 H 0.45 -3.74 8.73 -92.71 -0.81 -4.55 16 23 C 0.17 1.50 6.66 39.01 0.26 1.76 16 24 C -0.15 -0.32 9.86 22.40 0.22 -0.10 16 25 C -0.06 -0.18 10.01 22.28 0.22 0.04 16 26 C -0.14 -1.31 10.03 22.28 0.22 -1.09 16 27 C -0.06 -1.17 9.65 22.45 0.22 -0.95 16 28 C -0.21 -4.14 5.89 -19.99 -0.12 -4.25 16 29 C 0.41 12.17 7.15 27.05 0.19 12.37 16 30 O -0.53 -21.83 15.85 14.38 0.23 -21.60 16 31 C -0.15 -4.25 7.43 31.12 0.23 -4.02 16 32 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 33 H 0.36 16.45 5.78 -92.71 -0.54 15.92 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.05 8.08 -2.38 -0.02 2.03 16 36 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.04 1.29 7.84 -2.38 -0.02 1.27 16 38 H 0.41 3.94 6.48 -92.71 -0.60 3.34 16 39 H 0.22 -0.87 6.31 -2.91 -0.02 -0.89 16 40 H 0.18 -1.20 8.06 -2.91 -0.02 -1.22 16 41 H 0.17 -0.66 8.06 -2.91 -0.02 -0.68 16 42 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.12 2.52 7.79 -2.91 -0.02 2.50 16 44 H 0.06 1.91 7.90 -2.39 -0.02 1.90 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -102.66 378.10 1.64 -101.02 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.94 Total: 11.20 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.12 Total: 3.33 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -4.91 Total: -117.36 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: 0.46 Total: -46.58 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.40 kcal Total: -102.66 1.64 -101.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086136255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.731 kcal (2) G-P(sol) polarization free energy of solvation -102.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds