Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99976 * 2 1 4 4 H 1.48506 * 109.47029 * 240.00047 * 3 2 1 5 5 H 1.48494 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47356 * 120.00509 * 3 2 1 7 7 C 1.38811 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00061 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00051 * 179.97438 * 9 7 2 11 11 H 1.08993 * 112.90929 * 336.25155 * 10 9 7 12 12 C 1.53962 * 113.66387 * 107.55366 * 10 9 7 13 13 C 1.53782 * 87.11063 * 139.88885 * 12 10 9 14 14 H 1.08997 * 113.61225 * 89.18406 * 13 12 10 15 15 C 1.52998 * 113.68747 * 220.07804 * 13 12 10 16 16 N 1.46499 * 109.46882 * 272.53320 * 15 13 12 17 17 C 1.34783 * 119.99918 * 180.02562 * 16 15 13 18 18 O 1.21647 * 119.99643 * 0.02562 * 17 16 15 19 19 C 1.47139 * 119.99917 * 180.02562 * 17 16 15 20 20 C 1.39027 * 121.10236 * 359.71842 * 19 17 16 21 21 N 1.32077 * 121.40570 * 179.74798 * 20 19 17 22 22 C 1.31828 * 123.60340 * 0.55482 * 21 20 19 23 23 O 1.35255 * 119.61728 * 179.73901 * 22 21 20 24 24 C 1.41184 * 120.77387 * 359.72665 * 22 21 20 25 25 C 1.40121 * 122.10986 * 180.02562 * 24 22 21 26 26 C 1.36354 * 119.51010 * 179.97438 * 25 24 22 27 27 C 1.39183 * 121.05084 * 359.97438 * 26 25 24 28 28 C 1.36510 * 120.89721 * 0.02562 * 27 26 25 29 29 C 1.39617 * 119.43487 * 359.97438 * 28 27 26 30 30 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 31 31 H 0.97004 * 119.99679 * 359.97438 * 1 2 3 32 32 H 0.97002 * 120.00151 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.53543 * 25.33559 * 12 10 9 34 34 H 1.08998 * 113.73879 * 254.47157 * 12 10 9 35 35 H 1.08995 * 109.47742 * 32.53801 * 15 13 12 36 36 H 1.09003 * 109.47049 * 152.53819 * 15 13 12 37 37 H 0.96999 * 120.00576 * 0.02562 * 16 15 13 38 38 H 1.07996 * 119.30061 * 0.02562 * 20 19 17 39 39 H 0.96701 * 114.00044 * 269.98997 * 23 22 21 40 40 H 1.08009 * 120.24731 * 359.94532 * 25 24 22 41 41 H 1.08001 * 119.47414 * 180.02562 * 26 25 24 42 42 H 1.08008 * 119.55148 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.28394 * 180.02562 * 28 27 26 44 44 H 1.09002 * 113.61445 * 139.98212 * 30 13 12 45 45 H 1.09002 * 113.61408 * 270.79943 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 3.0658 -3.5645 -0.4067 12 6 1.9999 -4.4052 1.3425 13 6 1.8463 -5.6995 0.5264 14 1 2.7960 -6.1667 0.2660 15 6 0.8421 -6.6873 1.1238 16 7 1.5222 -7.5473 2.0955 17 6 0.8310 -8.5003 2.7517 18 8 -0.3573 -8.6466 2.5368 19 6 1.5139 -9.3637 3.7281 20 6 2.8723 -9.2203 3.9871 21 7 3.4903 -9.9887 4.8658 22 6 2.8906 -10.9428 5.5498 23 8 3.6037 -11.6860 6.4265 24 6 1.5127 -11.1980 5.3781 25 6 0.8471 -12.2043 6.0905 26 6 -0.4856 -12.4047 5.8834 27 6 -1.1963 -11.6250 4.9755 28 6 -0.5777 -10.6366 4.2656 29 6 0.7863 -10.4065 4.4550 30 6 1.2597 -4.8285 -0.5971 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 1.1221 -4.1590 1.9401 34 1 2.9275 -4.3559 1.9127 35 1 0.0435 -6.1373 1.6216 36 1 0.4194 -7.3013 0.3285 37 1 2.4698 -7.4309 2.2666 38 1 3.4333 -8.4614 3.4619 39 1 3.9980 -12.4797 6.0398 40 1 1.3858 -12.8171 6.7983 41 1 -0.9982 -13.1803 6.4332 42 1 -2.2513 -11.8049 4.8301 43 1 -1.1388 -10.0373 3.5639 44 1 1.5905 -5.1205 -1.5938 45 1 0.1794 -4.6993 -0.5306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086217370.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = 16.498269 kcal Electronic energy + Delta-G solvation = -27841.427429 eV Core-core repulsion = 23825.230503 eV Total energy + Delta-G solvation = -4016.196926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46184 -39.78114 -38.56549 -38.25956 -37.13424 -34.85528 -33.35206 -32.47429 -31.61134 -30.58915 -29.82587 -27.31561 -25.13050 -24.99175 -24.06846 -23.87079 -22.89570 -21.17621 -21.06823 -19.52196 -19.08267 -18.20790 -17.93567 -17.57832 -17.04083 -16.28921 -15.91665 -15.50642 -15.43515 -15.22246 -14.75481 -14.61934 -14.55365 -13.96055 -13.81478 -13.51465 -13.42427 -13.25153 -12.92153 -12.51846 -12.39401 -12.37731 -11.94084 -11.84424 -11.83864 -11.43137 -11.24880 -10.83339 -10.55511 -10.34539 -10.33329 -10.19696 -10.09465 -9.85289 -9.69170 -9.57121 -9.50276 -9.18093 -8.87571 -8.44060 -6.97613 -5.79070 -3.08050 -0.43498 0.42845 1.24195 2.28676 2.89076 2.92011 2.98334 3.42821 3.47344 3.48406 3.60662 3.97844 4.12614 4.24591 4.41070 4.57369 4.60805 4.62078 4.82242 4.92204 4.94754 4.96983 5.16479 5.19839 5.24245 5.44973 5.47160 5.49551 5.66756 5.77453 5.79479 5.86142 5.89908 6.03726 6.05640 6.07251 6.20963 6.28029 6.32943 6.38559 6.46662 6.57290 6.79923 6.89029 7.09045 7.28577 7.37385 7.67790 7.99481 8.39463 9.50459 10.08564 10.42638 11.43165 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.001860 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.645296 B =15046.707134 C =15636.944490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.076 0.924 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.089 0.911 15 C 0.132 3.868 16 N -0.716 5.716 17 C 0.566 3.434 18 O -0.535 6.535 19 C -0.184 4.184 20 C 0.148 3.852 21 N -0.517 5.517 22 C 0.384 3.616 23 O -0.475 6.475 24 C -0.130 4.130 25 C -0.083 4.083 26 C -0.120 4.120 27 C -0.092 4.092 28 C -0.112 4.112 29 C 0.024 3.976 30 C -0.142 4.142 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.164 0.836 39 H 0.408 0.592 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.169 0.831 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -30.007 10.206 31.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.094 0.906 12 C -0.203 4.203 13 C -0.148 4.148 14 H 0.107 0.893 15 C 0.009 3.991 16 N -0.367 5.367 17 C 0.353 3.647 18 O -0.414 6.414 19 C -0.189 4.189 20 C 0.003 3.997 21 N -0.235 5.235 22 C 0.192 3.808 23 O -0.283 6.283 24 C -0.134 4.134 25 C -0.103 4.103 26 C -0.138 4.138 27 C -0.111 4.111 28 C -0.129 4.129 29 C 0.019 3.981 30 C -0.181 4.181 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.181 0.819 39 H 0.268 0.732 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.186 0.814 44 H 0.080 0.920 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.372 -29.264 10.487 31.269 hybrid contribution 0.042 0.472 -0.141 0.494 sum 3.415 -28.792 10.346 30.784 Atomic orbital electron populations 1.69649 1.05136 1.25879 1.57329 1.24775 0.95535 0.97812 1.02803 0.86261 0.78533 0.83488 0.77851 1.21230 1.21687 1.21239 1.19255 0.91040 0.84249 1.43102 0.91140 1.42400 1.05760 0.99872 1.86968 1.21540 0.95318 0.85040 0.92718 0.90646 1.23999 1.01439 0.94879 1.00010 1.22654 0.98377 0.94398 0.99356 0.89289 1.21517 0.95413 0.91445 0.90681 1.45983 1.13243 1.34806 1.42635 1.17665 0.86521 0.80124 0.80349 1.90653 1.14903 1.70241 1.65556 1.21896 0.95105 0.99995 1.01922 1.22486 0.90362 0.95040 0.91807 1.66579 1.41972 1.07135 1.07861 1.19419 0.86584 0.88976 0.85851 1.84624 1.70037 1.39904 1.33743 1.18906 0.94223 0.99923 1.00349 1.20901 0.94887 0.96339 0.98129 1.21034 0.94354 0.99913 0.98482 1.21253 1.00649 0.94454 0.94774 1.21845 0.93268 0.97909 0.99905 1.18792 0.94055 0.92251 0.93028 1.23447 1.01079 0.96948 0.96663 0.93388 0.78056 0.90322 0.92709 0.90830 0.91366 0.76517 0.81900 0.73234 0.84473 0.85263 0.85071 0.81387 0.91962 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.57 5.40 -52.54 -0.28 -17.85 16 10 C 0.17 3.13 4.49 -67.02 -0.30 2.83 16 11 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 12 C -0.16 -2.59 7.44 -25.82 -0.19 -2.78 16 13 C -0.13 -1.62 3.75 -89.81 -0.34 -1.96 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.62 5.51 -4.04 -0.02 1.60 16 16 N -0.72 -7.68 5.51 -61.47 -0.34 -8.02 16 17 C 0.57 7.03 7.76 -12.65 -0.10 6.93 16 18 O -0.53 -8.08 13.72 5.24 0.07 -8.01 16 19 C -0.18 -2.04 6.06 -102.68 -0.62 -2.66 16 20 C 0.15 1.44 10.70 -17.15 -0.18 1.26 16 21 N -0.52 -5.47 10.25 -12.66 -0.13 -5.60 16 22 C 0.38 3.62 7.79 -16.44 -0.13 3.49 16 23 O -0.47 -3.28 12.80 -17.46 -0.22 -3.50 16 24 C -0.13 -1.24 5.75 -106.78 -0.61 -1.85 16 25 C -0.08 -0.60 9.58 -39.55 -0.38 -0.98 16 26 C -0.12 -0.80 9.95 -39.91 -0.40 -1.20 16 27 C -0.09 -0.73 9.96 -39.85 -0.40 -1.13 16 28 C -0.11 -1.19 9.32 -39.69 -0.37 -1.56 16 29 C 0.02 0.26 5.90 -104.77 -0.62 -0.35 16 30 C -0.14 -2.17 7.39 -25.92 -0.19 -2.36 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.39 10.14 7.92 -40.82 -0.32 9.81 16 33 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 3.29 6.56 -40.82 -0.27 3.02 16 38 H 0.16 1.13 6.42 -52.49 -0.34 0.79 16 39 H 0.41 0.65 9.06 45.56 0.41 1.06 16 40 H 0.14 0.66 7.66 -52.48 -0.40 0.25 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.17 2.03 5.23 -52.49 -0.27 1.76 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -34.68 378.04 -9.54 -44.22 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.93 Total: 11.25 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -5.10 Total: -8.08 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.03 Total: -58.83 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.15 Total: -11.51 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.68 -9.54 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086217370.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.717 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds