Wall clock time and date at job start Sat Apr 11 2020 06:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47064 * 269.99616 * 3 2 1 5 5 H 1.48496 * 109.47372 * 29.99725 * 3 2 1 6 6 H 1.48500 * 109.46994 * 150.00058 * 3 2 1 7 7 C 1.38815 * 119.99887 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99654 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.85432 * 336.20111 * 10 9 7 12 12 C 1.53791 * 113.69085 * 107.46507 * 10 9 7 13 13 C 1.53789 * 87.07967 * 89.12613 * 12 10 9 14 14 H 1.08992 * 113.68848 * 270.87733 * 13 12 10 15 15 C 1.52998 * 113.61362 * 139.98208 * 13 12 10 16 16 N 1.46496 * 109.47269 * 87.50076 * 15 13 12 17 17 C 1.34771 * 120.00330 * 179.97438 * 16 15 13 18 18 O 1.21549 * 119.99734 * 0.02562 * 17 16 15 19 19 C 1.47924 * 120.00089 * 180.02562 * 17 16 15 20 20 C 1.38263 * 119.24193 * 180.02562 * 19 17 16 21 21 C 1.40694 * 118.64838 * 179.97438 * 20 19 17 22 22 C 1.40237 * 122.04926 * 180.02562 * 21 20 19 23 23 C 1.36312 * 119.48334 * 179.97438 * 22 21 20 24 24 C 1.39254 * 120.94178 * 0.02562 * 23 22 21 25 25 C 1.36366 * 121.05541 * 359.95299 * 24 23 22 26 26 C 1.40041 * 119.59334 * 0.04871 * 25 24 23 27 27 C 1.41347 * 121.85463 * 179.97438 * 26 25 24 28 28 O 1.35489 * 119.95621 * 359.95556 * 27 26 25 29 29 N 1.31394 * 120.09050 * 180.22922 * 27 26 25 30 30 C 1.53782 * 113.61731 * 205.00058 * 10 9 7 31 31 H 0.97004 * 120.00111 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00229 * 0.02562 * 9 7 2 33 33 H 1.08997 * 113.61079 * 334.58001 * 12 10 9 34 34 H 1.08994 * 113.61268 * 203.67481 * 12 10 9 35 35 H 1.09008 * 109.46934 * 327.50326 * 15 13 12 36 36 H 1.08992 * 109.47301 * 207.50451 * 15 13 12 37 37 H 0.97004 * 119.99956 * 0.02562 * 16 15 13 38 38 H 1.08004 * 120.67547 * 0.02562 * 20 19 17 39 39 H 1.07999 * 120.25790 * 359.96170 * 22 21 20 40 40 H 1.07996 * 119.53118 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.47005 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.19967 * 180.02562 * 25 24 23 43 43 H 0.96700 * 114.00200 * 90.00060 * 28 27 26 44 44 H 1.08998 * 113.61871 * 156.25542 * 30 10 9 45 45 H 1.08998 * 113.68675 * 25.35825 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 3.0656 -3.5639 -0.4048 12 6 2.0009 -4.4032 1.3439 13 6 0.7219 -5.0805 0.8235 14 1 -0.1895 -4.5271 1.0493 15 6 0.6223 -6.5633 1.1871 16 7 -0.0080 -6.7024 2.5022 17 6 -0.2015 -7.9270 3.0306 18 8 0.1474 -8.9160 2.4162 19 6 -0.8385 -8.0674 4.3583 20 6 -1.0289 -9.3312 4.8858 21 6 -1.6354 -9.4502 6.1497 22 6 -1.8623 -10.6963 6.7518 23 6 -2.4537 -10.7507 7.9788 24 6 -2.8358 -9.5872 8.6417 25 6 -2.6291 -8.3599 8.0845 26 6 -2.0242 -8.2652 6.8250 27 6 -1.7877 -7.0182 6.2029 28 8 -2.1504 -5.8714 6.8266 29 7 -1.2216 -6.9699 5.0182 30 6 1.2601 -4.8288 -0.5950 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3880 -0.0002 33 1 1.8316 -3.7497 2.1997 34 1 2.8302 -5.0941 1.4951 35 1 1.6213 -6.9984 1.2152 36 1 0.0214 -7.0811 0.4396 37 1 -0.2868 -5.9131 2.9924 38 1 -0.7176 -10.2091 4.3391 39 1 -1.5710 -11.6056 6.2473 40 1 -2.6285 -11.7098 8.4434 41 1 -3.3029 -9.6581 9.6129 42 1 -2.9305 -7.4664 8.6111 43 1 -1.4617 -5.4968 7.3928 44 1 1.8869 -5.6361 -0.9737 45 1 0.4925 -4.5202 -1.3047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086387286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:51 Heat of formation + Delta-G solvation = 11.641164 kcal Electronic energy + Delta-G solvation = -27841.267437 eV Core-core repulsion = 23824.859891 eV Total energy + Delta-G solvation = -4016.407546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49788 -39.73102 -38.51196 -38.31347 -36.87917 -34.69739 -33.20561 -32.70095 -31.71736 -30.28690 -29.84501 -27.50356 -25.03858 -24.82199 -24.45178 -23.58178 -22.58400 -21.77419 -21.07622 -19.29638 -18.53068 -18.26953 -17.90693 -17.32280 -16.90380 -16.26449 -15.89347 -15.71441 -15.33833 -14.92119 -14.77765 -14.49931 -14.22742 -14.12065 -13.89413 -13.69398 -13.40146 -13.25910 -12.85671 -12.44428 -12.37494 -12.18395 -12.12947 -11.88401 -11.70682 -11.36523 -11.01854 -10.84061 -10.62680 -10.50687 -10.45104 -10.15165 -9.96016 -9.70847 -9.66825 -9.63788 -9.43091 -8.99037 -8.86107 -8.44859 -6.97746 -5.78531 -3.07551 -0.25258 0.22694 1.33864 2.08681 2.94895 3.01246 3.17921 3.43188 3.48349 3.50098 3.63066 4.05282 4.11105 4.28360 4.38313 4.56232 4.57462 4.68469 4.80526 4.96619 5.08859 5.10640 5.21521 5.27302 5.27733 5.44189 5.46780 5.47650 5.66488 5.72641 5.84466 5.88345 5.89749 5.96600 5.99072 6.13658 6.24160 6.26791 6.40494 6.43317 6.62222 6.78815 6.93007 7.03235 7.07973 7.29755 7.61117 7.70807 8.14411 8.40545 9.51098 10.09142 10.43318 11.43850 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.002067 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.894413 B =13540.122590 C =14989.112139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.120 4.120 14 H 0.094 0.906 15 C 0.129 3.871 16 N -0.701 5.701 17 C 0.568 3.432 18 O -0.540 6.540 19 C 0.082 3.918 20 C -0.095 4.095 21 C -0.023 4.023 22 C -0.104 4.104 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.082 4.082 26 C -0.108 4.108 27 C 0.357 3.643 28 O -0.471 6.471 29 N -0.483 5.483 30 C -0.147 4.147 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.139 0.861 43 H 0.406 0.594 44 H 0.077 0.923 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 -23.105 18.517 30.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.139 4.139 14 H 0.112 0.888 15 C 0.006 3.994 16 N -0.350 5.350 17 C 0.352 3.648 18 O -0.418 6.418 19 C -0.043 4.043 20 C -0.116 4.116 21 C -0.027 4.027 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.112 4.112 27 C 0.162 3.838 28 O -0.279 6.279 29 N -0.204 5.204 30 C -0.187 4.187 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.250 0.750 38 H 0.174 0.826 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.266 0.734 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.933 -22.896 17.260 29.094 hybrid contribution 0.102 0.712 0.998 1.230 sum -4.831 -22.184 18.258 29.134 Atomic orbital electron populations 1.69666 1.05117 1.25755 1.57461 1.24772 0.95548 0.97788 1.02850 0.86166 0.78639 0.83716 0.77518 1.21695 1.21777 1.20730 1.19289 0.91107 0.83981 1.42909 0.91002 1.42170 1.05702 0.99422 1.87110 1.21053 0.95071 0.85599 0.92765 0.91975 1.23890 0.95599 0.99634 1.01796 1.22718 0.99727 0.92812 0.98598 0.88776 1.21573 0.97668 0.97326 0.82860 1.45945 1.60121 1.08295 1.20686 1.17782 0.78955 0.83958 0.84099 1.90785 1.51926 1.37783 1.61347 1.20614 0.99849 0.88435 0.95432 1.22206 0.96458 0.98751 0.94187 1.18063 0.97425 0.93332 0.93924 1.21053 0.99088 0.96323 0.95736 1.21067 0.96787 0.98997 0.94731 1.21041 0.99558 0.92226 1.00441 1.20987 0.96765 0.98870 0.93521 1.19066 1.02410 0.93105 0.96625 1.19115 0.91603 0.85062 0.88055 1.84738 1.41971 1.37771 1.63414 1.66857 1.11334 1.33206 1.09050 1.23446 1.00489 0.99691 0.95073 0.93452 0.78083 0.91468 0.91424 0.91299 0.91553 0.74979 0.82568 0.84423 0.85115 0.85161 0.84315 0.73449 0.90452 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.59 5.31 -52.63 -0.28 -17.87 16 10 C 0.17 3.31 4.56 -67.12 -0.31 3.01 16 11 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 12 C -0.17 -2.88 7.43 -25.91 -0.19 -3.08 16 13 C -0.12 -1.87 3.64 -89.80 -0.33 -2.20 16 14 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 15 C 0.13 1.83 5.51 -4.05 -0.02 1.80 16 16 N -0.70 -9.93 5.54 -61.23 -0.34 -10.27 16 17 C 0.57 8.34 7.80 -12.30 -0.10 8.24 16 18 O -0.54 -9.03 16.27 5.32 0.09 -8.94 16 19 C 0.08 1.07 6.73 -83.09 -0.56 0.51 16 20 C -0.09 -1.02 9.41 -38.65 -0.36 -1.39 16 21 C -0.02 -0.21 5.74 -106.85 -0.61 -0.82 16 22 C -0.10 -0.70 9.81 -39.52 -0.39 -1.08 16 23 C -0.10 -0.51 9.95 -39.90 -0.40 -0.91 16 24 C -0.11 -0.62 9.95 -39.88 -0.40 -1.01 16 25 C -0.08 -0.56 9.58 -39.58 -0.38 -0.93 16 26 C -0.11 -1.01 5.76 -106.67 -0.61 -1.62 16 27 C 0.36 3.82 7.80 -16.56 -0.13 3.69 16 28 O -0.47 -4.15 12.83 -18.16 -0.23 -4.38 16 29 N -0.48 -6.18 9.47 -9.60 -0.09 -6.27 16 30 C -0.15 -2.41 7.39 -25.91 -0.19 -2.60 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.39 10.18 7.90 -40.82 -0.32 9.86 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 35 H 0.07 0.98 7.84 -51.92 -0.41 0.57 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.41 5.78 7.77 -40.82 -0.32 5.46 16 38 H 0.16 1.51 7.59 -52.48 -0.40 1.11 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 41 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 42 H 0.14 0.70 7.65 -52.49 -0.40 0.30 16 43 H 0.41 1.57 9.06 45.56 0.41 1.99 16 44 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -34.33 384.66 -9.77 -44.10 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -5.19 Total: 13.60 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -5.22 Total: -5.73 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: 0.01 Total: -61.78 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.15 Total: -13.32 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.33 -9.77 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086387286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.746 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds