Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47268 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47416 * 30.00370 * 3 2 1 6 6 H 1.48507 * 109.47127 * 150.00096 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36942 * 120.00309 * 343.11515 * 7 2 1 10 10 C 1.46921 * 120.62733 * 331.88271 * 9 7 2 11 11 C 1.53191 * 108.77663 * 233.32958 * 10 9 7 12 12 C 1.53037 * 109.31329 * 305.36980 * 11 10 9 13 13 H 1.08994 * 109.46334 * 301.35557 * 12 11 10 14 14 N 1.46505 * 109.45562 * 181.38121 * 12 11 10 15 15 C 1.34775 * 119.99601 * 85.00601 * 14 12 11 16 16 O 1.21604 * 120.00580 * 359.97438 * 15 14 12 17 17 C 1.47434 * 120.00058 * 179.97438 * 15 14 12 18 18 C 1.38747 * 120.32847 * 359.71908 * 17 15 14 19 19 C 1.38871 * 120.72358 * 179.69766 * 18 17 15 20 20 C 1.36351 * 121.05867 * 0.60658 * 19 18 17 21 21 C 1.40441 * 120.08164 * 359.67735 * 20 19 18 22 22 C 1.40816 * 121.26409 * 179.97438 * 21 20 19 23 23 C 1.36633 * 118.15260 * 180.02562 * 22 21 20 24 24 C 1.39226 * 119.90984 * 0.02562 * 23 22 21 25 25 N 1.31233 * 121.69909 * 359.97438 * 24 23 22 26 26 C 1.33348 * 121.34931 * 0.02562 * 25 24 23 27 27 C 1.53042 * 109.53830 * 61.36726 * 12 11 10 28 28 H 1.08999 * 109.49699 * 58.61298 * 27 12 11 29 29 O 1.42900 * 109.49692 * 178.68507 * 27 12 11 30 30 C 1.46922 * 120.62727 * 151.60725 * 9 7 2 31 31 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.58788 * 353.12197 * 10 9 7 33 33 H 1.09011 * 109.58401 * 113.54526 * 10 9 7 34 34 H 1.09001 * 109.49176 * 65.32438 * 11 10 9 35 35 H 1.09004 * 109.49815 * 185.37965 * 11 10 9 36 36 H 0.97001 * 120.00368 * 264.99528 * 14 12 11 37 37 H 1.07994 * 119.63768 * 0.02562 * 18 17 15 38 38 H 1.08000 * 119.47260 * 180.28619 * 19 18 17 39 39 H 1.07995 * 119.96290 * 179.70151 * 20 19 18 40 40 H 1.08003 * 120.92101 * 0.05215 * 22 21 20 41 41 H 1.07996 * 120.04268 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.14944 * 180.02562 * 24 23 22 43 43 H 0.96699 * 113.99954 * 179.97438 * 29 27 12 44 44 H 1.09003 * 109.58165 * 246.45378 * 30 9 7 45 45 H 1.08999 * 109.59419 * 6.87345 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3627 0.3434 10 6 0.2248 -2.3413 1.2637 11 6 0.4922 -3.3261 2.4063 12 6 0.8038 -4.7060 1.8226 13 1 -0.0363 -5.0414 1.2146 14 7 1.0276 -5.6581 2.9135 15 6 -0.0195 -6.2809 3.4896 16 8 -1.1501 -6.0524 3.1045 17 6 0.2056 -7.2394 4.5870 18 6 1.4931 -7.5097 5.0281 19 6 1.7141 -8.4064 6.0652 20 6 0.6767 -9.0533 6.6690 21 6 -0.6420 -8.8135 6.2497 22 6 -1.7318 -9.4682 6.8552 23 6 -2.9880 -9.1876 6.3969 24 6 -3.1607 -8.2765 5.3584 25 7 -2.1416 -7.6690 4.7974 26 6 -0.8907 -7.8986 5.1983 27 6 2.0606 -4.6221 0.9534 28 1 2.8958 -4.2636 1.5550 29 8 2.3684 -5.9172 0.4336 30 6 1.8111 -3.6520 -0.2057 31 1 -0.4850 0.8400 0.0004 32 1 0.1001 -1.3370 1.6686 33 1 -0.6785 -2.6373 0.7301 34 1 1.3420 -2.9792 2.9941 35 1 -0.3892 -3.3910 3.0444 36 1 1.9294 -5.8402 3.2209 37 1 2.3321 -7.0134 4.5633 38 1 2.7243 -8.5982 6.3956 39 1 0.8693 -9.7507 7.4708 40 1 -1.5790 -10.1721 7.6599 41 1 -3.8458 -9.6719 6.8395 42 1 -4.1591 -8.0635 5.0060 43 1 3.1551 -5.9387 -0.1283 44 1 1.0372 -4.0548 -0.8592 45 1 2.7328 -3.5126 -0.7705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090402739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = 5.530360 kcal Electronic energy + Delta-G solvation = -29298.541019 eV Core-core repulsion = 25281.868489 eV Total energy + Delta-G solvation = -4016.672530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.13124 -39.45633 -37.85615 -37.06224 -35.37047 -34.21001 -33.61062 -31.99016 -30.80147 -30.60814 -29.59615 -28.42318 -25.39145 -24.67253 -23.68277 -23.36403 -22.28914 -21.64050 -20.17694 -19.47531 -18.44785 -17.89134 -17.10915 -16.97264 -16.48307 -16.07625 -15.68391 -14.97378 -14.91744 -14.79726 -14.32619 -14.16450 -13.97241 -13.87490 -13.75551 -13.27046 -13.17194 -13.06581 -12.70828 -12.34806 -12.23121 -12.07386 -11.88830 -11.63248 -11.50954 -11.08725 -10.85226 -10.70298 -10.61923 -10.28654 -10.23288 -9.94808 -9.87344 -9.69439 -9.51510 -9.10133 -9.05342 -8.68558 -8.50753 -8.36046 -6.73733 -5.82482 -3.27098 -0.05145 0.57948 1.56884 2.56493 3.34469 3.36371 3.38630 3.42685 3.44462 4.04336 4.09443 4.30450 4.40262 4.46450 4.53956 4.58371 4.63403 4.78186 4.86299 5.02728 5.21402 5.33046 5.35036 5.44167 5.52328 5.60338 5.62246 5.66999 5.77923 5.81710 5.92172 6.02227 6.05233 6.17427 6.22323 6.38846 6.52054 6.53699 6.59741 6.72723 6.81724 6.96432 7.33492 7.64623 7.75060 7.80494 7.91756 7.95517 8.40437 8.61350 9.15616 9.78047 10.34430 11.26007 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002556 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.670846 B =10950.346810 C =11487.881564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.146 4.146 12 C 0.166 3.834 13 H 0.088 0.912 14 N -0.716 5.716 15 C 0.549 3.451 16 O -0.498 6.498 17 C -0.099 4.099 18 C -0.066 4.066 19 C -0.124 4.124 20 C -0.077 4.077 21 C -0.111 4.111 22 C -0.061 4.061 23 C -0.175 4.175 24 C 0.130 3.870 25 N -0.433 5.433 26 C 0.160 3.840 27 C 0.080 3.920 28 H 0.055 0.945 29 O -0.571 6.571 30 C 0.121 3.879 31 H 0.256 0.744 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.391 0.609 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.160 0.840 43 H 0.373 0.627 44 H 0.029 0.971 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 -20.560 15.216 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.187 4.187 12 C 0.062 3.938 13 H 0.106 0.894 14 N -0.368 5.368 15 C 0.334 3.666 16 O -0.372 6.372 17 C -0.102 4.102 18 C -0.087 4.087 19 C -0.142 4.142 20 C -0.096 4.096 21 C -0.114 4.114 22 C -0.087 4.087 23 C -0.195 4.195 24 C -0.043 4.043 25 N -0.140 5.140 26 C 0.037 3.963 27 C 0.019 3.981 28 H 0.073 0.927 29 O -0.375 6.375 30 C -0.007 4.007 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.226 0.774 37 H 0.153 0.847 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.219 0.781 44 H 0.047 0.953 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.644 -19.751 14.529 24.528 hybrid contribution 1.511 0.293 0.569 1.640 sum 2.155 -19.458 15.098 24.723 Atomic orbital electron populations 1.70034 1.05293 1.25738 1.53140 1.25085 0.95295 0.98526 1.00515 0.86291 0.79121 0.83547 0.77736 1.21326 1.21479 1.20462 1.19135 0.92482 0.84586 1.42671 0.91609 1.44054 1.35916 1.01220 1.50032 1.20823 0.88680 0.98150 0.87751 1.22601 1.01047 0.94346 1.00669 1.20975 0.97518 0.88916 0.86395 0.89370 1.46027 1.08806 1.44566 1.37355 1.17872 0.85425 0.80907 0.82422 1.90861 1.21883 1.62568 1.61937 1.20081 0.92303 0.99409 0.98449 1.21480 0.95824 0.96024 0.95346 1.20837 0.99756 0.97088 0.96499 1.21130 0.91133 0.98455 0.98873 1.18842 0.94994 0.99306 0.98222 1.21443 0.91920 0.97286 0.98090 1.21970 0.98210 1.00254 0.99061 1.23221 0.98622 0.90976 0.91458 1.68366 0.98108 1.21693 1.25807 1.18653 0.91401 0.93658 0.92570 1.22780 0.96029 0.83182 0.96088 0.92663 1.86496 1.50552 1.30629 1.69803 1.21525 0.98786 0.87433 0.92931 0.93433 0.88966 0.95776 0.92435 0.91853 0.77432 0.84728 0.84825 0.84958 0.84351 0.84484 0.82256 0.78097 0.95319 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 11.20 55.49 0.62 -25.50 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.99 9.58 -15.06 -0.14 -7.13 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.61 2.99 -172.32 -0.52 -15.12 16 10 C 0.17 4.21 5.29 -3.71 -0.02 4.19 16 11 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 12 C 0.17 3.12 2.12 -67.89 -0.14 2.98 16 13 H 0.09 1.93 7.57 -51.93 -0.39 1.53 16 14 N -0.72 -11.52 4.87 -54.84 -0.27 -11.79 16 15 C 0.55 9.73 7.73 -12.52 -0.10 9.63 16 16 O -0.50 -10.83 14.85 5.27 0.08 -10.75 16 17 C -0.10 -1.43 5.91 -104.61 -0.62 -2.05 16 18 C -0.07 -0.69 9.52 -39.16 -0.37 -1.06 16 19 C -0.12 -1.00 9.93 -40.03 -0.40 -1.40 16 20 C -0.08 -0.63 9.75 -39.43 -0.38 -1.01 16 21 C -0.11 -1.21 5.74 -106.82 -0.61 -1.82 16 22 C -0.06 -0.51 9.90 -39.19 -0.39 -0.90 16 23 C -0.18 -1.46 10.03 -39.79 -0.40 -1.86 16 24 C 0.13 1.49 11.15 -17.44 -0.19 1.29 16 25 N -0.43 -6.87 8.44 -10.76 -0.09 -6.97 16 26 C 0.16 2.34 6.61 -84.58 -0.56 1.78 16 27 C 0.08 1.39 3.14 -26.61 -0.08 1.31 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 29 O -0.57 -8.72 13.16 -35.23 -0.46 -9.19 16 30 C 0.12 2.50 6.14 -3.71 -0.02 2.48 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 33 H 0.02 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.39 5.09 6.63 -40.82 -0.27 4.82 16 37 H 0.13 1.11 6.37 -52.49 -0.33 0.77 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.37 4.06 9.08 45.56 0.41 4.48 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -35.93 370.36 -9.85 -45.78 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.09 Total: 8.23 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: -4.67 Total: 3.33 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.25 Total: -59.37 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.39 Total: -19.94 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.93 -9.85 -45.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090402739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.308 kcal (2) G-P(sol) polarization free energy of solvation -35.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds