Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99707 * 2 1 4 4 H 1.48504 * 109.47268 * 270.00042 * 3 2 1 5 5 H 1.48502 * 109.47416 * 30.00370 * 3 2 1 6 6 H 1.48507 * 109.47127 * 150.00096 * 3 2 1 7 7 C 1.38805 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 163.12335 * 7 2 1 9 9 N 1.36942 * 120.00309 * 343.11515 * 7 2 1 10 10 C 1.46921 * 120.62733 * 331.88271 * 9 7 2 11 11 C 1.53191 * 108.77663 * 233.32958 * 10 9 7 12 12 C 1.53037 * 109.31329 * 305.36980 * 11 10 9 13 13 H 1.08994 * 109.46334 * 301.35557 * 12 11 10 14 14 N 1.46505 * 109.45562 * 181.38121 * 12 11 10 15 15 C 1.34775 * 119.99601 * 85.00601 * 14 12 11 16 16 O 1.21604 * 120.00580 * 359.97438 * 15 14 12 17 17 C 1.47434 * 120.00058 * 179.97438 * 15 14 12 18 18 C 1.38747 * 120.32847 * 359.71908 * 17 15 14 19 19 C 1.38871 * 120.72358 * 179.69766 * 18 17 15 20 20 C 1.36351 * 121.05867 * 0.60658 * 19 18 17 21 21 C 1.40441 * 120.08164 * 359.67735 * 20 19 18 22 22 C 1.40816 * 121.26409 * 179.97438 * 21 20 19 23 23 C 1.36633 * 118.15260 * 180.02562 * 22 21 20 24 24 C 1.39226 * 119.90984 * 0.02562 * 23 22 21 25 25 N 1.31233 * 121.69909 * 359.97438 * 24 23 22 26 26 C 1.33348 * 121.34931 * 0.02562 * 25 24 23 27 27 C 1.53042 * 109.53830 * 61.36726 * 12 11 10 28 28 H 1.08999 * 109.49699 * 58.61298 * 27 12 11 29 29 O 1.42900 * 109.49692 * 178.68507 * 27 12 11 30 30 C 1.46922 * 120.62727 * 151.60725 * 9 7 2 31 31 H 0.96995 * 120.00418 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.58788 * 353.12197 * 10 9 7 33 33 H 1.09011 * 109.58401 * 113.54526 * 10 9 7 34 34 H 1.09001 * 109.49176 * 65.32438 * 11 10 9 35 35 H 1.09004 * 109.49815 * 185.37965 * 11 10 9 36 36 H 0.97001 * 120.00368 * 264.99528 * 14 12 11 37 37 H 1.07994 * 119.63768 * 0.02562 * 18 17 15 38 38 H 1.08000 * 119.47260 * 180.28619 * 19 18 17 39 39 H 1.07995 * 119.96290 * 179.70151 * 20 19 18 40 40 H 1.08003 * 120.92101 * 0.05215 * 22 21 20 41 41 H 1.07996 * 120.04268 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.14944 * 180.02562 * 24 23 22 43 43 H 0.96699 * 113.99954 * 179.97438 * 29 27 12 44 44 H 1.09003 * 109.58165 * 246.45378 * 30 9 7 45 45 H 1.08999 * 109.59419 * 6.87345 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0554 -1.2221 -0.2721 9 7 1.3699 -2.3627 0.3434 10 6 0.2248 -2.3413 1.2637 11 6 0.4922 -3.3261 2.4063 12 6 0.8038 -4.7060 1.8226 13 1 -0.0363 -5.0414 1.2146 14 7 1.0276 -5.6581 2.9135 15 6 -0.0195 -6.2809 3.4896 16 8 -1.1501 -6.0524 3.1045 17 6 0.2056 -7.2394 4.5870 18 6 1.4931 -7.5097 5.0281 19 6 1.7141 -8.4064 6.0652 20 6 0.6767 -9.0533 6.6690 21 6 -0.6420 -8.8135 6.2497 22 6 -1.7318 -9.4682 6.8552 23 6 -2.9880 -9.1876 6.3969 24 6 -3.1607 -8.2765 5.3584 25 7 -2.1416 -7.6690 4.7974 26 6 -0.8907 -7.8986 5.1983 27 6 2.0606 -4.6221 0.9534 28 1 2.8958 -4.2636 1.5550 29 8 2.3684 -5.9172 0.4336 30 6 1.8111 -3.6520 -0.2057 31 1 -0.4850 0.8400 0.0004 32 1 0.1001 -1.3370 1.6686 33 1 -0.6785 -2.6373 0.7301 34 1 1.3420 -2.9792 2.9941 35 1 -0.3892 -3.3910 3.0444 36 1 1.9294 -5.8402 3.2209 37 1 2.3321 -7.0134 4.5633 38 1 2.7243 -8.5982 6.3956 39 1 0.8693 -9.7507 7.4708 40 1 -1.5790 -10.1721 7.6599 41 1 -3.8458 -9.6719 6.8395 42 1 -4.1591 -8.0635 5.0060 43 1 3.1551 -5.9387 -0.1283 44 1 1.0372 -4.0548 -0.8592 45 1 2.7328 -3.5126 -0.7705 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090402739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -21.978491 kcal Electronic energy + Delta-G solvation = -29299.733892 eV Core-core repulsion = 25281.868489 eV Total energy + Delta-G solvation = -4017.865403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -41.98217 -40.80366 -39.30421 -37.89423 -36.99397 -35.73421 -34.44695 -33.77902 -32.07686 -31.46945 -30.95284 -30.03467 -27.13620 -25.59901 -24.64245 -24.38723 -23.90536 -23.22074 -21.50004 -21.04065 -19.23440 -19.11251 -18.60084 -18.04182 -17.84007 -17.10932 -17.05722 -16.66257 -16.06842 -15.75043 -15.66554 -15.62024 -15.17779 -15.09207 -14.95223 -14.78854 -14.44118 -14.10433 -13.86290 -13.84296 -13.60783 -13.29703 -13.06277 -12.96947 -12.72582 -12.70336 -12.39309 -12.29143 -12.11380 -12.09200 -11.89361 -11.48173 -11.40684 -11.13111 -10.98146 -10.57556 -10.11385 -10.03261 -9.79578 -9.26642 -8.78010 -7.90966 -5.39602 -0.81542 -0.15728 0.77617 1.47593 1.49416 1.59299 1.80422 2.10210 2.25713 2.48661 3.10775 3.18092 3.26247 3.35510 3.56885 3.60605 3.77306 3.84258 3.88771 3.98834 4.04076 4.06233 4.18483 4.22253 4.36625 4.44175 4.49896 4.52903 4.64995 4.70518 4.82816 4.92801 4.93046 4.99315 5.02130 5.10155 5.11763 5.22528 5.34064 5.37107 5.48547 5.57378 5.59102 5.63600 5.85795 6.32635 6.60201 6.88957 7.07916 7.09874 7.34185 7.76132 8.29948 9.16633 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019458 B = 0.002556 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.670846 B =10950.346810 C =11487.881564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.053 4.053 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.263 1.263 7 C -0.266 4.266 8 H 0.080 0.920 9 N -0.603 5.603 10 C 0.183 3.817 11 C -0.127 4.127 12 C 0.173 3.827 13 H 0.048 0.952 14 N -0.703 5.703 15 C 0.544 3.456 16 O -0.556 6.556 17 C -0.151 4.151 18 C -0.045 4.045 19 C -0.129 4.129 20 C -0.054 4.054 21 C -0.131 4.131 22 C -0.048 4.048 23 C -0.176 4.176 24 C 0.115 3.885 25 N -0.503 5.503 26 C 0.129 3.871 27 C 0.105 3.895 28 H 0.078 0.922 29 O -0.571 6.571 30 C 0.117 3.883 31 H 0.251 0.749 32 H 0.063 0.937 33 H -0.013 1.013 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.410 0.590 37 H 0.155 0.845 38 H 0.176 0.824 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.396 0.604 44 H 0.008 0.992 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -23.392 18.233 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.801 3.199 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.395 4.395 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.056 3.944 11 C -0.168 4.168 12 C 0.068 3.932 13 H 0.067 0.933 14 N -0.355 5.355 15 C 0.332 3.668 16 O -0.434 6.434 17 C -0.155 4.155 18 C -0.065 4.065 19 C -0.146 4.146 20 C -0.073 4.073 21 C -0.133 4.133 22 C -0.074 4.074 23 C -0.196 4.196 24 C -0.056 4.056 25 N -0.211 5.211 26 C 0.006 3.994 27 C 0.043 3.957 28 H 0.096 0.904 29 O -0.378 6.378 30 C -0.009 4.009 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.005 0.995 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.247 0.753 37 H 0.172 0.828 38 H 0.194 0.806 39 H 0.196 0.804 40 H 0.203 0.797 41 H 0.192 0.808 42 H 0.184 0.816 43 H 0.247 0.753 44 H 0.026 0.974 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.278 -22.633 17.548 28.957 hybrid contribution 0.381 1.011 -0.347 1.135 sum 4.659 -21.622 17.202 28.020 Atomic orbital electron populations 1.70219 1.07074 1.26098 1.55026 1.25950 0.95999 1.02039 1.00854 0.85197 0.78139 0.78982 0.77617 1.21048 1.22262 1.18792 1.19584 0.93136 0.85337 1.41473 0.90286 1.44261 1.35581 1.02406 1.50479 1.20505 0.87791 0.97440 0.88638 1.22306 1.00993 0.94591 0.98889 1.20591 0.97270 0.88224 0.87116 0.93322 1.45749 1.09663 1.43687 1.36402 1.18558 0.84666 0.80849 0.82716 1.90816 1.24064 1.64584 1.63898 1.19918 0.94524 1.01465 0.99621 1.21826 0.94433 0.95263 0.95019 1.21303 1.01895 0.96032 0.95407 1.21706 0.89593 0.97473 0.98509 1.19207 0.97382 0.99040 0.97656 1.22007 0.90848 0.96551 0.97996 1.22287 1.00033 0.99333 0.97917 1.23613 0.98296 0.91391 0.92313 1.68263 0.99746 1.24541 1.28593 1.19000 0.90986 0.95172 0.94231 1.22293 0.95591 0.83275 0.94501 0.90401 1.86472 1.52225 1.28760 1.70365 1.21704 0.98748 0.86292 0.94191 0.94043 0.91879 0.99463 0.90929 0.93187 0.75281 0.82785 0.80634 0.80422 0.79736 0.80760 0.81584 0.75338 0.97368 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 11.20 21.65 0.24 -56.87 16 2 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 3 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.27 -14.40 9.58 84.03 0.81 -13.59 16 8 H 0.08 4.01 7.89 -2.91 -0.02 3.99 16 9 N -0.60 -30.71 2.99 -699.09 -2.09 -32.81 16 10 C 0.18 9.56 5.29 86.36 0.46 10.02 16 11 C -0.13 -5.49 5.65 30.67 0.17 -5.32 16 12 C 0.17 6.78 2.12 45.02 0.10 6.88 16 13 H 0.05 2.31 7.57 -2.39 -0.02 2.29 16 14 N -0.70 -23.00 4.87 -445.67 -2.17 -25.17 16 15 C 0.54 20.51 7.73 86.67 0.67 21.18 16 16 O -0.56 -26.62 14.85 -4.04 -0.06 -26.68 16 17 C -0.15 -4.49 5.91 -19.86 -0.12 -4.61 16 18 C -0.05 -0.84 9.52 22.54 0.21 -0.62 16 19 C -0.13 -1.50 9.93 21.98 0.22 -1.28 16 20 C -0.05 -0.63 9.75 22.37 0.22 -0.41 16 21 C -0.13 -2.53 5.74 -21.29 -0.12 -2.65 16 22 C -0.05 -0.64 9.90 22.52 0.22 -0.41 16 23 C -0.18 -2.63 10.03 22.13 0.22 -2.40 16 24 C 0.12 2.79 11.15 85.02 0.95 3.74 16 25 N -0.50 -17.27 8.44 -187.97 -1.59 -18.86 16 26 C 0.13 3.86 6.61 40.61 0.27 4.13 16 27 C 0.10 3.54 3.14 30.67 0.10 3.63 16 28 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 29 O -0.57 -16.37 13.16 -148.98 -1.96 -18.33 16 30 C 0.12 4.86 6.14 86.36 0.53 5.39 16 31 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.06 3.65 6.07 -2.39 -0.01 3.63 16 33 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 34 H 0.07 2.89 8.14 -2.39 -0.02 2.88 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.41 10.08 6.63 -92.71 -0.61 9.47 16 37 H 0.15 2.06 6.37 -2.91 -0.02 2.04 16 38 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.19 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.40 7.39 9.08 -74.06 -0.67 6.72 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.08 2.96 7.93 -2.39 -0.02 2.94 16 Total: -1.00 -88.01 370.36 -0.52 -88.53 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.24 Total: 22.44 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 5.32 Total: 21.11 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -5.61 Total: -133.70 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -2.02 Total: -45.00 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -88.01 -0.52 -88.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090402739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.554 kcal (2) G-P(sol) polarization free energy of solvation -88.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds